Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017539

Physical Location & Seq

Genomic Coordinates Forward (+)

8759032 .. 8759714

Gene Structure 683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027122

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGATGAAAATATGTCAGGGTTTTGTATTAAAAGTATTCGCGGTGGCGGTGGCGGTGGTGGTAATGGTGGTAATAACAAGTGTGGGCGTTGGAATCCTACTACTGAGCAGGTCAAAGTTTTGACGGACCTGTTCAGGTCTGGACTCCGAACCCCCAGCACTGATCAGATTCAGAAAATCTCTACTCAGTTAAGCTTTTATGGAAAGATCGAGAGCAAGAATGTATTCTACTGGTTCCAGAATCACAAAGCCAGAGAGAGGCAGAAGCGCCGCAAAGTTTCCATTGATATCGACAAGGAGTTCATACGTCGAGATTATGACAAGATTTCTTCTCCAAAAGAAGTGCTTAATCAAGTTAGTTCAGAGCCTGCAAGAGTGATTGAGACGCTTCAACTCTTCCCAATAAACTCATTCGATGAATCAGAAGCAGAGAAGCTGAGATTTTATGCAAATGAGTTTTGTTGCAAGGAGAATACTAGAGGTTTTACTTACGCTGTTGGGGCAGAAATGGATCATCATCCACCTTTGGATCTACGCTTAAGCTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043565 GO:0048364 GO:0048507 GO:0048518 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1902459 GO:1903506 GO:1905392 GO:2000036 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

184

Amino Acids

20.98

Weight (kDa)

8.87

Isoelectric Point (pI)

58.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	28 - 88	2.5e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11260
fragaria_vesca	FvH4_7g24100 FvH4_7g24100
malus_domestica	MD01G1148000.v1.1 MD07G1215100.v1.1
prunus_persica	Prupe.2G247100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369521
rosa_laevigata	RLG00000027122
rosa_multiflora	Rmu_ssc0000484.1_g000027
rosa_roxburghii	Rroxscaffold_4G00287560
rosa_rugosa	Rorug01G0351000
rosa_wichuraiana	Rw1G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	100
AccII	CGCG	1 cut(s)	42
AciI	CCGC	4 cut(s)	42, 48, 54, 271
AclWI	GGATC	2 cut(s)	519, 537
AfiI	CCNNNNNNNGG	1 cut(s)	258
AflII	CTTAAG	1 cut(s)	538
AgsI	TTSAA	1 cut(s)	392
AluBI	AGCT	3 cut(s)	195, 436, 543
AluI	AGCT	3 cut(s)	195, 436, 543
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	2 cut(s)	519, 537
AlwNI	CAGNNNCTG	1 cut(s)	368
Asp700I	GAANNNNTTC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	127
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	1 cut(s)	477
BfoI	RGCGCY	1 cut(s)	271
BfrI	CTTAAG	1 cut(s)	538
BfuAI	ACCTGC	1 cut(s)	100
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	516
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	236
Bse8I	GATNNNNATC	1 cut(s)	516
BseGI	GGATG	2 cut(s)	10, 517
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	3 cut(s)	96, 200, 428
BseNI	ACTGG	1 cut(s)	236
BseYI	CCCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	377
BsmBI	CGTCTC	1 cut(s)	377
Bsp143I	GATC	4 cut(s)	163, 207, 511, 529
BspACI	CCGC	4 cut(s)	42, 48, 54, 271
BspCNI	CTCAG	3 cut(s)	97, 199, 429
BspFNI	CGCG	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	236
BspMI	ACCTGC	1 cut(s)	100
BspPI	GGATC	2 cut(s)	519, 537
BspTI	CTTAAG	1 cut(s)	538
BsrI	ACTGG	1 cut(s)	236
BssMI	GATC	4 cut(s)	163, 207, 511, 529
Bst6I	CTCTTC	1 cut(s)	401
BstAFI	CTTAAG	1 cut(s)	538
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	3 cut(s)	105, 186, 437
BstF5I	GGATG	2 cut(s)	10, 517
BstFNI	CGCG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	4 cut(s)	166, 210, 514, 532
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	4 cut(s)	163, 207, 511, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstUI	CGCG	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BtsCI	GGATG	2 cut(s)	10, 517
BtsIMutI	CAGTG	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	369
CaiI	CAGNNNCTG	1 cut(s)	368
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	127
CseI	GACGC	1 cut(s)	394
CviJI	RGCY	5 cut(s)	195, 251, 367, 436, 543
CviKI_1	RGCY	5 cut(s)	195, 251, 367, 436, 543
DdeI	CTNAG	3 cut(s)	105, 186, 437
DpnI	GATC	4 cut(s)	165, 209, 513, 531
DpnII	GATC	4 cut(s)	163, 207, 511, 529
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	127
EcoRV	GATATC	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	377
FaiI	YATR	5 cut(s)	14, 201, 305, 318, 447
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	2 cut(s)	17, 504
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	1 cut(s)	271
GsaI	CCCAGC	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	271
HgaI	GACGC	1 cut(s)	394
HhaI	GCGC	1 cut(s)	270
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HindIII	AAGCTT	2 cut(s)	193, 541
HinfI	GANTC	5 cut(s)	94, 144, 169, 241, 419
Hpy188I	TCNGA	5 cut(s)	149, 168, 174, 364, 424
Hpy188III	TCNNGA	4 cut(s)	141, 211, 238, 311
Hpy99I	CGWCG	1 cut(s)	312
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	3 cut(s)	371, 449, 465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	3 cut(s)	105, 186, 437
HpySE526I	ACGT	1 cut(s)	307
HspAI	GCGC	1 cut(s)	268
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	163, 207, 511, 529
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	1 cut(s)	307
MalI	GATC	4 cut(s)	165, 209, 513, 531
MboI	GATC	4 cut(s)	163, 207, 511, 529
MboII	GAAGA	2 cut(s)	321, 388
MflI	RGATCY	1 cut(s)	529
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	2 cut(s)	252, 473
MroXI	GAANNNNTTC	1 cut(s)	224
MseI	TTAA	4 cut(s)	30, 191, 348, 539
MspCI	CTTAAG	1 cut(s)	538
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	500
NdeII	GATC	4 cut(s)	163, 207, 511, 529
NlaIV	GGNNCC	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	4 cut(s)	94, 169, 241, 419
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	529
SaqAI	TTAA	4 cut(s)	30, 191, 348, 539
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	4 cut(s)	163, 207, 511, 529
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	138
SetI	ASST	9 cut(s)	114, 132, 140, 197, 310, 438, 484, 526, 545
SinI	GGWCC	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	538
SmoI	CTYRAG	1 cut(s)	538
SsiI	CCGC	4 cut(s)	42, 48, 54, 271
SspMI	CTAG	1 cut(s)	477
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	4 cut(s)	210, 291, 310, 414
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	4 cut(s)	94, 169, 241, 419
Tru1I	TTAA	4 cut(s)	30, 191, 348, 539
Tru9I	TTAA	4 cut(s)	30, 191, 348, 539
TscAI	CASTG	1 cut(s)	166
TspDTI	ATGAA	3 cut(s)	21, 292, 432
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	166
Vha464I	CTTAAG	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.