AT3G12930

Ribosomal silencing factor during starvation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013563
Physical Location & Seq
Forward (+)
4128334 .. 4129956
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12930.1

Sequence Viewer

Length: 717 bp
ATGGCATCTTCCACCGGTCTCACCGTCGCCGGAGCTCTGCTTGCCGGAGATTTTCGATTACCAGCTGTATCGTCTCTAATACCCAGAAAGACTTCTTCTTCATTGTCATGCCTTAGCAACAGAGATTTATCGTCTCCTTATAATTGCTGTTGGCGACTATCCAGAGGCAAAATTTTGACTTCTCTCAGTAACTCACGGAAATTTGCTGTGGGAAAGGAAGCAGAAGATGGGTTTCTATCGAATGTGAGCGAAGATACTGATGAGATGTTCGACGACTTGTTCAACAAATATGGGAAGGTTGTTTTTAGAAGCACTGATGTTAAGTCTCCAACAGCTGAGGTTGACGATGATGCAGAGAGTTTAGCATTTGCTGTTGAATTGGCTAAAGTTGCGAGTGATGTGAAAGCTGGAGATATTAAGGTCCTCTTTGTCAAGCCTCTTGTTTACTGGACTCGGTTTTTCATCATTGCCACTGCGTTTTCCCGCCCTCAAATTGATGCAATAGGATCCAGGATGAGAGACCTGGCTGAGAAGAAGTACGGAAAAGTTGCTAATGGAGATGTAAAGCCAAATTCGTGGACGTTGTTAGATTTTGGTGATGTGGTGATCCATTTATTCTTACCTCCGCAAAGGACATTCTATAACTTGGAAGACTTTTACGGGAATGCTATGCAAATTGAACTTCCCTTTGAGGATCAGTCACAACCACGGAACTGA

Protein Analysis

238

Amino Acids

26.38

Weight (kDa)

5.35

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RsfS PF02410 126 - 220 3.4e-21 Ribosomal silencing factor during starvation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013563)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12930
fragaria_vesca FvH4_3g15760 FvH4_3g15760
malus_domestica MD10G1202500.v1.1
prunus_persica Prupe.4G139700_v2.0.a1 Prupe.4G139700_v2.0.a1
pyrus_communis pycom05g20150 pycom10g17330
rosa_chinensis RchiOBHm_Chr5g0026561
rosa_laevigata RLG00000032935
rosa_multiflora Rmu_sc0004371.1_g000009
rosa_roxburghii Rroxscaffold_1G00052920
rosa_rugosa Rorug05G0093800
rosa_samantha Rh5AG186700 Rh5BG183700 Rh5CG203600 Rh5DG186000
rosa_wichuraiana Rw5G016940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
AciI CCGC 2 cut(s) 484, 626
AclWI GGATC 4 cut(s) 501, 514, 601, 702
AcsI RAATTY 3 cut(s) 171, 200, 571
AfaI GTAC 1 cut(s) 539
AgeI ACCGGT 1 cut(s) 14
AgsI TTSAA 3 cut(s) 283, 377, 680
AjnI CCWGG 2 cut(s) 509, 522
AluBI AGCT 4 cut(s) 35, 65, 335, 407
AluI AGCT 4 cut(s) 35, 65, 335, 407
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 5 cut(s) 23, 78, 138, 330, 513
AlwI GGATC 4 cut(s) 501, 514, 601, 702
ApoI RAATTY 3 cut(s) 171, 200, 571
AsiGI ACCGGT 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 421
AsuHPI GGTGA 3 cut(s) 13, 608, 616
AvaII GGWCC 1 cut(s) 421
BamHI GGATCC 1 cut(s) 506
BanII GRGCYC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 657
Bbv12I GWGCWC 1 cut(s) 37
BbvCI CCTCAGC 1 cut(s) 336
BccI CCATC 1 cut(s) 221
BciT130I CCWGG 2 cut(s) 511, 524
BcoDI GTCTC 5 cut(s) 23, 78, 138, 330, 513
Bme1390I CCNGG 2 cut(s) 511, 524
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 1 cut(s) 508
BmrFI CCNGG 2 cut(s) 511, 524
BmsI GCATC 3 cut(s) 14, 340, 487
BpiI GAAGAC 1 cut(s) 657
BpmI CTGGAG 1 cut(s) 429
Bpu10I CCTNAGC 2 cut(s) 113, 336
BsaI GGTCTC 2 cut(s) 23, 513
BsaJI CCNNGG 1 cut(s) 707
BsaWI WCCGGW 1 cut(s) 14
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 452
Bse3DI GCAATG 1 cut(s) 465
BseBI CCWGG 2 cut(s) 511, 524
BseDI CCNNGG 1 cut(s) 707
BseGI GGATG 1 cut(s) 519
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 3 cut(s) 199, 327, 519
BseNI ACTGG 1 cut(s) 452
BshTI ACCGGT 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 37
BsiSI CCGG 3 cut(s) 15, 30, 45
BsmAI GTCTC 5 cut(s) 23, 78, 138, 330, 513
BsmBI CGTCTC 2 cut(s) 78, 138
BsmI GAATGC 1 cut(s) 670
Bso31I GGTCTC 2 cut(s) 23, 513
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 3 cut(s) 506, 606, 694
BspACI CCGC 2 cut(s) 484, 626
BspCNI CTCAG 3 cut(s) 198, 328, 520
BspLI GGNNCC 1 cut(s) 508
BspPI GGATC 4 cut(s) 501, 514, 601, 702
BspTNI GGTCTC 2 cut(s) 23, 513
BsrDI GCAATG 1 cut(s) 465
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 1 cut(s) 452
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 707
BssMI GATC 3 cut(s) 506, 606, 694
Bst2UI CCWGG 2 cut(s) 511, 524
Bst4CI ACNGT 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 4 cut(s) 113, 185, 336, 528
BstDSI CCRYGG 1 cut(s) 707
BstF5I GGATG 1 cut(s) 519
BstKTI GATC 3 cut(s) 509, 609, 697
BstMAI GTCTC 5 cut(s) 23, 78, 138, 330, 513
BstMBI GATC 3 cut(s) 506, 606, 694
BstMWI GCNNNNNNNGC 2 cut(s) 41, 389
BstNI CCWGG 2 cut(s) 511, 524
BstSCI CCNGG 2 cut(s) 509, 522
BstV2I GAAGAC 1 cut(s) 657
BstX2I RGATCY 1 cut(s) 506
BstXI CCANNNNNNTGG 1 cut(s) 576
BstYI RGATCY 1 cut(s) 506
BtgI CCRYGG 1 cut(s) 707
BtsCI GGATG 1 cut(s) 519
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 2 cut(s) 312, 471
Cac8I GCNNGC 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 421
Csp6I GTAC 1 cut(s) 538
CspAI ACCGGT 1 cut(s) 14
CviAII CATG 1 cut(s) 108
CviJI RGCY 8 cut(s) 35, 65, 335, 383, 407, 436, 527, 568
CviKI_1 RGCY 8 cut(s) 35, 65, 335, 383, 407, 436, 527, 568
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 4 cut(s) 113, 185, 336, 528
DpnI GATC 3 cut(s) 508, 608, 696
DpnII GATC 3 cut(s) 506, 606, 694
Ecl136II GAGCTC 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 37
Eco31I GGTCTC 2 cut(s) 23, 513
Eco47I GGWCC 1 cut(s) 421
Eco53kI GAGCTC 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 421
EcoRII CCWGG 2 cut(s) 509, 522
EcoT38I GRGCYC 1 cut(s) 37
Esp3I CGTCTC 2 cut(s) 78, 138
FaeI CATG 1 cut(s) 111
FaiI YATR 5 cut(s) 109, 141, 291, 642, 671
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FatI CATG 1 cut(s) 107
FauI CCCGC 1 cut(s) 491
FokI GGATG 1 cut(s) 526
FriOI GRGCYC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 429
HapII CCGG 3 cut(s) 15, 30, 45
Hin1II CATG 1 cut(s) 111
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 1 cut(s) 451
HpaII CCGG 3 cut(s) 15, 30, 45
HphI GGTGA 3 cut(s) 13, 608, 616
Hpy166II GTNNAC 3 cut(s) 343, 445, 579
Hpy188III TCNNGA 1 cut(s) 162
Hpy8I GTNNAC 3 cut(s) 343, 445, 579
Hpy99I CGWCG 2 cut(s) 29, 275
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 581
HpyCH4V TGCA 3 cut(s) 353, 500, 673
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 389
HpyF3I CTNAG 4 cut(s) 113, 185, 336, 528
HpySE526I ACGT 1 cut(s) 581
Hsp92II CATG 1 cut(s) 111
Kzo9I GATC 3 cut(s) 506, 606, 694
LmnI GCTCC 1 cut(s) 32
LweI GCATC 3 cut(s) 14, 340, 487
MaeII ACGT 1 cut(s) 581
MaeIII GTNAC 2 cut(s) 188, 699
MalI GATC 3 cut(s) 508, 608, 696
MboI GATC 3 cut(s) 506, 606, 694
MboII GAAGA 6 cut(s) 87, 90, 236, 263, 544, 662
MflI RGATCY 1 cut(s) 506
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 7 cut(s) 142, 171, 200, 377, 492, 571, 675
MlyI GAGTC 1 cut(s) 445
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 7 cut(s) 158, 331, 434, 447, 498, 633, 685
MroXI GAANNNNTTC 1 cut(s) 91
MseI TTAA 2 cut(s) 321, 417
MslI CAYNNNNRTG 1 cut(s) 106
MspA1I CMGCKG 2 cut(s) 65, 335
MspI CCGG 3 cut(s) 15, 30, 45
MspR9I CCNGG 2 cut(s) 511, 524
Mva1269I GAATGC 1 cut(s) 670
MvaI CCWGG 2 cut(s) 511, 524
MwoI GCNNNNNNNGC 2 cut(s) 41, 389
NdeII GATC 3 cut(s) 506, 606, 694
NlaIII CATG 1 cut(s) 111
NlaIV GGNNCC 1 cut(s) 508
NmuCI GTSAC 1 cut(s) 699
PctI GAATGC 1 cut(s) 670
PdmI GAANNNNTTC 1 cut(s) 91
PfoI TCCNGGA 1 cut(s) 509
PinAI ACCGGT 1 cut(s) 14
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PpuMI RGGWCCY 1 cut(s) 421
PsiI TTATAA 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 37
Psp5II RGGWCCY 1 cut(s) 421
Psp6I CCWGG 2 cut(s) 509, 522
PspGI CCWGG 2 cut(s) 509, 522
PspN4I GGNNCC 1 cut(s) 508
PspPI GGNCC 1 cut(s) 421
PspPPI RGGWCCY 1 cut(s) 421
PsuI RGATCY 1 cut(s) 506
PvuII CAGCTG 2 cut(s) 65, 335
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
RseI CAYNNNNRTG 1 cut(s) 106
SacI GAGCTC 1 cut(s) 37
SaqAI TTAA 2 cut(s) 321, 417
Sau3AI GATC 3 cut(s) 506, 606, 694
Sau96I GGNCC 1 cut(s) 421
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 2 cut(s) 511, 524
SduI GDGCHC 1 cut(s) 37
SfaNI GCATC 3 cut(s) 14, 340, 487
SinI GGWCC 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 106
Sse9I AATT 7 cut(s) 142, 171, 200, 377, 492, 571, 675
SsiI CCGC 2 cut(s) 484, 626
SstI GAGCTC 1 cut(s) 37
StyD4I CCNGG 2 cut(s) 509, 522
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 1 cut(s) 584
TaqI TCGA 3 cut(s) 55, 239, 270
TasI AATT 7 cut(s) 142, 171, 200, 377, 492, 571, 675
Tru1I TTAA 2 cut(s) 321, 417
Tru9I TTAA 2 cut(s) 321, 417
TscAI CASTG 2 cut(s) 319, 478
TseFI GTSAC 1 cut(s) 699
Tsp45I GTSAC 1 cut(s) 699
TspDTI ATGAA 2 cut(s) 90, 451
TspGWI ACGGA 2 cut(s) 211, 555
TspRI CASTG 2 cut(s) 319, 478
VpaK11BI GGWCC 1 cut(s) 421
XapI RAATTY 3 cut(s) 171, 200, 571
XmnI GAANNNNTTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.