Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013563

Physical Location & Seq

Genomic Coordinates Reverse (-)

9921149 .. 9924809

Gene Structure 3661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g15760.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCGGTACCCGTCACTCTGTCTTTCCCGGCCGCTGTCTTCGGGAATCGATTCTCCGAAGACTTACGGAAGCTGGGTCGTCTTCAACCTCAAAGTAGACACCCAAAGCTTTTGCCTTGCAACTGTTTCTGGCGACTACCCAGAAGTAAAAGCACGTCGAGGGAGTTGCTCAAGTTGAGTTTGGCTCAGGGGAAAGAAGCTGAAGATAGTTTCATTCCGAATGTGAGTGAAGATACAGACGATATGTTTGATGACTTGTTTGATAGATATGGAAAGGTGGTATACAGTAGAAAGGACAAGAAGCCTCCTAGTGAAGAGCTTGATGACGATGCTGAGAGCTTATCATTTGCTGTAGAATTGGCTAAAGTTGCAAATGAGGTAAAGGCCGGAGATATAAAGGTTCTTTTTGTGAAGCCTCTTGTATACTGGACTCGGTTTTTTATTATCGTCACAGCATTTTCTCGTCCACAAATTAATGCAATTGGGACCAAGATGAGAGATCTGGCAGAGAAAAAGTATGGAAAAGTTCCAACTGGAGACGCTAAACCCAACTCATGGACCCTGTTGGACTTTGGTGATGTCGTAATCCATATATTTCTTCCGCCACAGCGAGATTTCTACAACTTGGAAGAATTCTATGGTAACGCTACACCCGTTGAACTACCTTTCGAAAACCAGCCACCAATGCGAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006417 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

232

Amino Acids

26.31

Weight (kDa)

6.2

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12930
fragaria_vesca	FvH4_3g15760 FvH4_3g15760
malus_domestica	MD10G1202500.v1.1
prunus_persica	Prupe.4G139700_v2.0.a1 Prupe.4G139700_v2.0.a1
pyrus_communis	pycom05g20150 pycom10g17330
rosa_chinensis	RchiOBHm_Chr5g0026561
rosa_laevigata	RLG00000032935
rosa_multiflora	Rmu_sc0004371.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052920
rosa_rugosa	Rorug05G0093800
rosa_samantha	Rh5AG186700 Rh5BG183700 Rh5CG203600 Rh5DG186000
rosa_wichuraiana	Rw5G016940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	7
AccB1I	GGYRCC	1 cut(s)	7
AccB7I	CCANNNNNTGG	1 cut(s)	555
AccI	GTMKAC	3 cut(s)	97, 282, 423
AciI	CCGC	3 cut(s)	5, 33, 602
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	632
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	555, 689
AgsI	TTSAA	2 cut(s)	86, 659
AjiI	CACGTC	1 cut(s)	156
AluBI	AGCT	5 cut(s)	73, 109, 200, 319, 339
AluI	AGCT	5 cut(s)	73, 109, 200, 319, 339
Alw26I	GTCTC	1 cut(s)	531
AoxI	GGCC	2 cut(s)	30, 384
ApoI	RAATTY	1 cut(s)	632
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AseI	ATTAAT	1 cut(s)	474
Asp700I	GAANNNNTTC	1 cut(s)	50
Asp718I	GGTACC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	486, 558
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	587
AsuII	TTCGAA	1 cut(s)	669
AvaII	GGWCC	2 cut(s)	486, 558
BanI	GGYRCC	1 cut(s)	7
BbsI	GAAGAC	3 cut(s)	31, 66, 74
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	531
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	351
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	2 cut(s)	486, 558
BmgBI	CACGTC	1 cut(s)	156
BmgT120I	GGNCC	2 cut(s)	486, 558
BmiI	GGNNCC	3 cut(s)	9, 487, 560
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	319
BpiI	GAAGAC	3 cut(s)	31, 66, 74
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
BpmI	CTGGAG	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	2 cut(s)	555, 689
Bse1I	ACTGG	2 cut(s)	431, 538
BseCI	ATCGAT	1 cut(s)	49
BseLI	CCNNNNNNNGG	2 cut(s)	555, 689
BseMII	CTCAG	2 cut(s)	200, 324
BseNI	ACTGG	2 cut(s)	431, 538
BseX3I	CGGCCG	1 cut(s)	30
BseYI	CCCAGC	1 cut(s)	73
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	32, 386
BshNI	GGYRCC	1 cut(s)	7
BshVI	ATCGAT	1 cut(s)	49
BsiEI	CGRYCG	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	29, 387
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	2 cut(s)	555, 689
BsmAI	GTCTC	1 cut(s)	531
BsmBI	CGTCTC	1 cut(s)	531
BsmFI	GGGAC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	32, 386
Bsp119I	TTCGAA	1 cut(s)	669
Bsp143I	GATC	1 cut(s)	499
BspACI	CCGC	3 cut(s)	5, 33, 602
BspANI	GGCC	2 cut(s)	32, 386
BspCNI	CTCAG	2 cut(s)	199, 325
BspDI	ATCGAT	1 cut(s)	49
BspLI	GGNNCC	3 cut(s)	9, 487, 560
BspQI	GCTCTTC	1 cut(s)	309
BspT104I	TTCGAA	1 cut(s)	669
BspT107I	GGYRCC	1 cut(s)	7
BsrI	ACTGG	2 cut(s)	431, 538
BssMI	GATC	1 cut(s)	499
BssNAI	GTATAC	2 cut(s)	283, 424
Bst1107I	GTATAC	2 cut(s)	283, 424
Bst4CI	ACNGT	2 cut(s)	125, 287
Bst6I	CTCTTC	1 cut(s)	309
BstBI	TTCGAA	1 cut(s)	669
BstDEI	CTNAG	2 cut(s)	186, 333
BstKTI	GATC	1 cut(s)	502
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	1 cut(s)	499
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 685
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	351
BstV2I	GAAGAC	3 cut(s)	31, 66, 74
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BstZ17I	GTATAC	2 cut(s)	283, 424
BstZI	CGGCCG	1 cut(s)	30
Bsu15I	ATCGAT	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	32, 386
BsuTUI	ATCGAT	1 cut(s)	49
BtrI	CACGTC	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	486, 558
ClaI	ATCGAT	1 cut(s)	49
CseI	GACGC	1 cut(s)	548
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	1 cut(s)	555
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	2 cut(s)	186, 333
DpnI	GATC	1 cut(s)	501
DpnII	GATC	1 cut(s)	499
EaeI	YGGCCR	1 cut(s)	30
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
EciI	GGCGGA	1 cut(s)	591
EclXI	CGGCCG	1 cut(s)	30
Eco47I	GGWCC	2 cut(s)	486, 558
Eco52I	CGGCCG	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	222
EcoRI	GAATTC	1 cut(s)	632
Esp3I	CGTCTC	1 cut(s)	531
FaeI	CATG	1 cut(s)	558
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	1 cut(s)	554
FblI	GTMKAC	3 cut(s)	97, 282, 423
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	1 cut(s)	33
GsaI	CCCAGC	1 cut(s)	77
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	2 cut(s)	32, 386
HapII	CCGG	2 cut(s)	29, 387
HgaI	GACGC	1 cut(s)	548
Hin1II	CATG	1 cut(s)	558
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	3 cut(s)	46, 51, 430
HpaII	CCGG	2 cut(s)	29, 387
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	4 cut(s)	98, 283, 424, 467
Hpy188I	TCNGA	2 cut(s)	58, 219
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	4 cut(s)	98, 283, 424, 467
Hpy99I	CGWCG	1 cut(s)	160
HpyCH4III	ACNGT	2 cut(s)	125, 287
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	3 cut(s)	120, 371, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 685
HpyF3I	CTNAG	2 cut(s)	186, 333
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	558
KpnI	GGTACC	1 cut(s)	11
Kzo9I	GATC	1 cut(s)	499
LguI	GCTCTTC	1 cut(s)	309
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	3 cut(s)	13, 448, 641
MalI	GATC	1 cut(s)	501
MboI	GATC	1 cut(s)	499
MboII	GAAGA	8 cut(s)	31, 71, 74, 215, 242, 326, 590, 641
MfeI	CAATTG	1 cut(s)	480
MflI	RGATCY	1 cut(s)	499
MluCI	AATT	4 cut(s)	356, 471, 480, 632
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	2 cut(s)	546, 554
MnlI	CCTC	6 cut(s)	99, 153, 315, 370, 426, 683
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	2 cut(s)	29, 387
MspR9I	CCNGG	1 cut(s)	29
MunI	CAATTG	1 cut(s)	480
MwoI	GCNNNNNNNGC	2 cut(s)	368, 685
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	1 cut(s)	499
NlaIII	CATG	1 cut(s)	558
NlaIV	GGNNCC	3 cut(s)	9, 487, 560
NmuCI	GTSAC	2 cut(s)	13, 448
NspV	TTCGAA	1 cut(s)	669
PciSI	GCTCTTC	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	651
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	46, 51
PflMI	CCANNNNNTGG	1 cut(s)	555
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PshBI	ATTAAT	1 cut(s)	474
PspFI	CCCAGC	1 cut(s)	73
PspN4I	GGNNCC	3 cut(s)	9, 487, 560
PspPI	GGNCC	2 cut(s)	486, 558
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	499
Sau96I	GGNCC	2 cut(s)	486, 558
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	1 cut(s)	29
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	669
SinI	GGWCC	2 cut(s)	486, 558
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	4 cut(s)	356, 471, 480, 632
SsiI	CCGC	3 cut(s)	5, 33, 602
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	125, 287
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	3 cut(s)	49, 158, 669
TasI	AATT	4 cut(s)	356, 471, 480, 632
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	46, 51
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseFI	GTSAC	2 cut(s)	13, 448
Tsp45I	GTSAC	2 cut(s)	13, 448
TspDTI	ATGAA	1 cut(s)	202
TspGWI	ACGGA	1 cut(s)	82
Van91I	CCANNNNNTGG	1 cut(s)	555
VpaK11BI	GGWCC	2 cut(s)	486, 558
VspI	ATTAAT	1 cut(s)	474
XapI	RAATTY	1 cut(s)	632
XmiI	GTMKAC	3 cut(s)	97, 282, 423
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.