Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013563

Physical Location & Seq

Genomic Coordinates Reverse (-)

20509417 .. 20512414

Gene Structure 2998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG203600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCGGTACTCGTTACTCTGTCTCTCCCGGCAGCTGGCGCCGGAAACCGATTCTACGATGACCTCCAGAAACTGGGTCGTCTTCAACCTCAAACTAGCCCCGCCACGATTTCTTCTCATAAATGGTTGCCCTGCAAATGCTTTTGGCAACTACCCAGAAGCAAAAAGACGTCGAGGGAATTGCTCAGATTGCGGCGTTTGGCTCAGGGGAAAGAAGCTGAAGATAGTTTCATTCCGAATGTGAGTGAAGATACAGACGATATGTTTGATGACTTGTTTGATAAATATGGAAAGGTGGTATATAGTAGAAAGGATAAGAAGCCTCCTAATGCAGAGCTTGATGACGATGCTGAGAGCTTATCATTTGCTGTAGAATTGGCCAAAGTTGCAAATGAGGTAAAGGCCGGAGATATAAAGGTGCTTTTTGTTAAGCCTCTTGTATACTGGACTCGGTTTTTTATTATTGCCACAGCTTTTTCTCGTCCACAAATTGATGCAATTAGGTCCAAGATGAGAGATCTGGCAGAGAAAAAGTATGGAAAAATTCCAAACGGAGACGCTAAACCCAATTCATGGACCCTGTTGGACTTTGGTGATGTTGTAATCCATATATTTCTTCCGCCACAGCGGGCTTTCTACAACTTGGAAGAATTCTATGGTAACGCTACACCCGTTGAACTACCTTTCGAAAACCAGCCACCAATGCGAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006417 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

237

Amino Acids

26.95

Weight (kDa)

8.39

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	125 - 219	2.6e-22	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12930
fragaria_vesca	FvH4_3g15760 FvH4_3g15760
malus_domestica	MD10G1202500.v1.1
prunus_persica	Prupe.4G139700_v2.0.a1 Prupe.4G139700_v2.0.a1
pyrus_communis	pycom05g20150 pycom10g17330
rosa_chinensis	RchiOBHm_Chr5g0026561
rosa_laevigata	RLG00000032935
rosa_multiflora	Rmu_sc0004371.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052920
rosa_rugosa	Rorug05G0093800
rosa_samantha	Rh5AG186700 Rh5BG183700 Rh5CG203600 Rh5DG186000
rosa_wichuraiana	Rw5G016940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	2 cut(s)	73, 573
AccI	GTMKAC	1 cut(s)	441
AciI	CCGC	5 cut(s)	5, 102, 193, 620, 628
AcoI	YGGCCR	1 cut(s)	378
AcsI	RAATTY	2 cut(s)	543, 650
AcuI	CTGAAG	1 cut(s)	240
AcyI	GRCGYC	2 cut(s)	39, 170
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	4 cut(s)	35, 73, 573, 707
AgsI	TTSAA	2 cut(s)	86, 677
AluBI	AGCT	5 cut(s)	35, 218, 337, 357, 473
AluI	AGCT	5 cut(s)	35, 218, 337, 357, 473
Alw26I	GTCTC	2 cut(s)	27, 549
AlwNI	CAGNNNCTG	1 cut(s)	73
AoxI	GGCC	2 cut(s)	378, 402
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	2 cut(s)	543, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	504, 576
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	605
AsuII	TTCGAA	1 cut(s)	687
AvaII	GGWCC	2 cut(s)	504, 576
BalI	TGGCCA	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	44
BcgI	CGANNNNNNTGC	2 cut(s)	163, 197
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	27, 549
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	369
BfoI	RGCGCY	1 cut(s)	42
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	2 cut(s)	33, 194
BlsI	GCNGC	2 cut(s)	34, 195
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	2 cut(s)	504, 576
BmgT120I	GGNCC	2 cut(s)	504, 576
BmiI	GGNNCC	2 cut(s)	40, 578
BmrFI	CCNGG	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	337, 484
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	74
BpmI	CTGGAG	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	687
BpuMI	CCSGG	1 cut(s)	29
BsaHI	GRCGYC	2 cut(s)	39, 170
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 73, 573, 707
Bse1I	ACTGG	2 cut(s)	78, 449
BseLI	CCNNNNNNNGG	4 cut(s)	35, 73, 573, 707
BseMII	CTCAG	3 cut(s)	199, 218, 342
BseNI	ACTGG	2 cut(s)	78, 449
BseXI	GCAGC	1 cut(s)	44
BshFI	GGCC	2 cut(s)	380, 404
BshNI	GGYRCC	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	29, 42, 405
BslI	CCNNNNNNNGG	4 cut(s)	35, 73, 573, 707
BsmAI	GTCTC	2 cut(s)	27, 549
BsmBI	CGTCTC	1 cut(s)	549
BsnI	GGCC	2 cut(s)	380, 404
Bsp119I	TTCGAA	1 cut(s)	687
Bsp143I	GATC	1 cut(s)	517
BspACI	CCGC	5 cut(s)	5, 102, 193, 620, 628
BspANI	GGCC	2 cut(s)	380, 404
BspCNI	CTCAG	3 cut(s)	198, 217, 343
BspLI	GGNNCC	2 cut(s)	40, 578
BspT104I	TTCGAA	1 cut(s)	687
BspT107I	GGYRCC	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	78, 449
BssMI	GATC	1 cut(s)	517
BssNAI	GTATAC	1 cut(s)	442
BssNI	GRCGYC	2 cut(s)	39, 170
Bst1107I	GTATAC	1 cut(s)	442
BstACI	GRCGYC	2 cut(s)	39, 170
BstBI	TTCGAA	1 cut(s)	687
BstC8I	GCNNGC	2 cut(s)	37, 630
BstDEI	CTNAG	3 cut(s)	185, 204, 351
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	1 cut(s)	520
BstMAI	GTCTC	2 cut(s)	27, 549
BstMBI	GATC	1 cut(s)	517
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 190, 386, 703
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BstZ17I	GTATAC	1 cut(s)	442
BsuRI	GGCC	2 cut(s)	380, 404
Cac8I	GCNNGC	2 cut(s)	37, 630
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	504, 576
CseI	GACGC	1 cut(s)	566
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	1 cut(s)	573
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	3 cut(s)	185, 204, 351
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	1 cut(s)	519
DpnII	GATC	1 cut(s)	517
EaeI	YGGCCR	1 cut(s)	378
EciI	GGCGGA	1 cut(s)	609
Eco47I	GGWCC	2 cut(s)	504, 576
Eco57I	CTGAAG	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	650
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	549
FaeI	CATG	1 cut(s)	576
FatI	CATG	1 cut(s)	572
FauI	CCCGC	2 cut(s)	109, 621
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	33, 194
Fsp4HI	GCNGC	2 cut(s)	33, 194
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	33, 194
GsuI	CTGGAG	1 cut(s)	50
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	380, 404
HapII	CCGG	3 cut(s)	29, 42, 405
HgaI	GACGC	1 cut(s)	566
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	2 cut(s)	39, 170
Hin1II	CATG	1 cut(s)	576
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	2 cut(s)	51, 448
HpaII	CCGG	3 cut(s)	29, 42, 405
HphI	GGTGA	1 cut(s)	605
Hpy166II	GTNNAC	2 cut(s)	442, 485
Hpy188I	TCNGA	2 cut(s)	188, 237
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	2 cut(s)	442, 485
Hpy99I	CGWCG	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	4 cut(s)	135, 332, 389, 497
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 190, 386, 703
HpyF3I	CTNAG	3 cut(s)	185, 204, 351
HpySE526I	ACGT	1 cut(s)	170
Hsp92I	GRCGYC	2 cut(s)	39, 170
Hsp92II	CATG	1 cut(s)	576
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	517
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	2 cut(s)	337, 484
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	2 cut(s)	13, 659
MalI	GATC	1 cut(s)	519
MboI	GATC	1 cut(s)	517
MboII	GAAGA	6 cut(s)	74, 105, 233, 260, 608, 659
MflI	RGATCY	1 cut(s)	517
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	7 cut(s)	179, 374, 489, 498, 543, 568, 650
MluNI	TGGCCA	1 cut(s)	380
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	442
MmeI	TCCRAC	1 cut(s)	564
MnlI	CCTC	7 cut(s)	74, 99, 168, 333, 388, 444, 701
Mox20I	TGGCCA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	1 cut(s)	429
Msp20I	TGGCCA	1 cut(s)	380
MspA1I	CMGCKG	2 cut(s)	35, 628
MspI	CCGG	3 cut(s)	29, 42, 405
MspR9I	CCNGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	4 cut(s)	38, 190, 386, 703
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	1 cut(s)	517
NlaIII	CATG	1 cut(s)	576
NlaIV	GGNNCC	2 cut(s)	40, 578
NspV	TTCGAA	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	1 cut(s)	669
PfeI	GAWTC	1 cut(s)	51
PflMI	CCANNNNNTGG	2 cut(s)	73, 573
PkrI	GCNGC	2 cut(s)	34, 195
PleI	GAGTC	1 cut(s)	442
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	442
PspN4I	GGNNCC	2 cut(s)	40, 578
PspPI	GGNCC	2 cut(s)	504, 576
PstNI	CAGNNNCTG	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	517
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	2 cut(s)	33, 194
Sau3AI	GATC	1 cut(s)	517
Sau96I	GGNCC	2 cut(s)	504, 576
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	29
SfaNI	GCATC	2 cut(s)	337, 484
SfcI	CTRYAG	1 cut(s)	369
SfoI	GGCGCC	1 cut(s)	40
SfuI	TTCGAA	1 cut(s)	687
SinI	GGWCC	2 cut(s)	504, 576
Sse9I	AATT	7 cut(s)	179, 374, 489, 498, 543, 568, 650
SsiI	CCGC	5 cut(s)	5, 102, 193, 620, 628
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	27
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	2 cut(s)	173, 687
TasI	AATT	7 cut(s)	179, 374, 489, 498, 543, 568, 650
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	51
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	220, 561
TspGWI	ACGGA	1 cut(s)	567
Van91I	CCANNNNNTGG	2 cut(s)	73, 573
VpaK11BI	GGWCC	2 cut(s)	504, 576
XapI	RAATTY	2 cut(s)	543, 650
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	1 cut(s)	96
ZraI	GACGTC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.