Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013563

Physical Location & Seq

Genomic Coordinates Reverse (-)

7798811 .. 7802168

Gene Structure 3358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G139700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGGTGCTCATTACGCTGTCTTTCGCCGGAGGTGGCCCCGGCTTCCGATTCGATGCCCTCCAGAAACTGGGTCGACTTGAACCGAAGCTCTGTCAAAGTTCCACCAAGCCTTTTTCTCATAAATGGTTCCACTGCAAGTGTTTTTGGCAAGAACCCAGAAGCAAGAACCTAACTTTGAAGTCAAGGGAATTGCGAACATTGCGTTTGGCTCGTGGGAAAGAAGCTGAAGATAGTTTCGCTTCGAATGTAAGTGAAGATACCGACGATATGTTTGACGACTTATTGGATAGATATGGAAAAGTGGTATATCAAAGCAACGACAGGATGTCTCCTAGCACAGAGCTTGATGACGATGCTGAAAGCTTATCATTTGCTGTAGAAGTGGCCAGTGTTGCAAATGATGTAAAAGCAGGAGATATAAAGGTCCTATTTGTGAAGCCTCTTGTGTATTGGACTCGATTTTTTATTATTGCCACAGCATTTTCCCGTCCGCAAATTGACGCAATTGGACTTTTTATGCCGCAATTTAGGTCCAGGATAAGAGATCTGGCAGAGACAAAGTATGGAAGAGTTCCATCTGGGGACTCAAAAGCCAACTCATGGACCCTGTTGGACTTCGGTGATGTTGTTATTCATATATTTCTTCCGCCACAACGAGCTTTCTACAACTTGGAAGAATTCTATGCTAATGCTACGCCCGTTGAATTGCCTTTTGAAAACCAGCCACCATTTCGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006417 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

248

Amino Acids

28.08

Weight (kDa)

5.99

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12930
fragaria_vesca	FvH4_3g15760 FvH4_3g15760
malus_domestica	MD10G1202500.v1.1
prunus_persica	Prupe.4G139700_v2.0.a1 Prupe.4G139700_v2.0.a1
pyrus_communis	pycom05g20150 pycom10g17330
rosa_chinensis	RchiOBHm_Chr5g0026561
rosa_laevigata	RLG00000032935
rosa_multiflora	Rmu_sc0004371.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052920
rosa_rugosa	Rorug05G0093800
rosa_samantha	Rh5AG186700 Rh5BG183700 Rh5CG203600 Rh5DG186000
rosa_wichuraiana	Rw5G016940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	70, 603
AccI	GTMKAC	1 cut(s)	76
AciI	CCGC	4 cut(s)	5, 494, 524, 650
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	680
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	3 cut(s)	70, 603, 737
AgsI	TTSAA	4 cut(s)	83, 181, 707, 719
AhdI	GACNNNNNGTC	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	536
AluBI	AGCT	5 cut(s)	91, 227, 346, 366, 662
AluI	AGCT	5 cut(s)	91, 227, 346, 366, 662
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	2 cut(s)	336, 551
AlwNI	CAGNNNCTG	1 cut(s)	70
AoxI	GGCC	2 cut(s)	37, 387
ApoI	RAATTY	1 cut(s)	680
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AspS9I	GGNCC	4 cut(s)	38, 427, 534, 606
AsuC2I	CCSGG	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	635
AsuII	TTCGAA	1 cut(s)	245
AvaII	GGWCC	3 cut(s)	427, 534, 606
BalI	TGGCCA	1 cut(s)	389
BauI	CACGAG	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	12
BccI	CCATC	1 cut(s)	586
BciT130I	CCWGG	1 cut(s)	538
BcnI	CCSGG	1 cut(s)	42
BcoDI	GTCTC	2 cut(s)	336, 551
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	378
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	525
Bme1390I	CCNGG	2 cut(s)	42, 538
Bme18I	GGWCC	3 cut(s)	427, 534, 606
BmeRI	GACNNNNNGTC	1 cut(s)	328
BmgT120I	GGNCC	4 cut(s)	38, 427, 534, 606
BmiI	GGNNCC	3 cut(s)	40, 131, 608
BmrFI	CCNGG	2 cut(s)	42, 538
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	2 cut(s)	46, 346
BmuI	ACTGGG	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	47
Bpu14I	TTCGAA	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 603, 737
Bse1I	ACTGG	2 cut(s)	75, 390
Bse3DI	GCAATG	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	538
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	333
BseLI	CCNNNNNNNGG	3 cut(s)	70, 603, 737
BseMI	GCAATG	1 cut(s)	200
BseNI	ACTGG	2 cut(s)	75, 390
BshFI	GGCC	2 cut(s)	39, 389
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	30, 42
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	3 cut(s)	70, 603, 737
BsmAI	GTCTC	2 cut(s)	336, 551
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	2 cut(s)	39, 389
Bsp119I	TTCGAA	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	547
BspACI	CCGC	4 cut(s)	5, 494, 524, 650
BspANI	GGCC	2 cut(s)	39, 389
BspLI	GGNNCC	3 cut(s)	40, 131, 608
BspT104I	TTCGAA	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	75, 390
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	547
BssSI	CACGAG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	538
Bst6I	CTCTTC	1 cut(s)	565
BstBI	TTCGAA	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	333
BstKTI	GATC	1 cut(s)	550
BstMAI	GTCTC	2 cut(s)	336, 551
BstMBI	GATC	1 cut(s)	547
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 202, 395
BstNI	CCWGG	1 cut(s)	538
BstSCI	CCNGG	2 cut(s)	40, 536
BstSFI	CTRYAG	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
BsuRI	GGCC	2 cut(s)	39, 389
BtsCI	GGATG	1 cut(s)	333
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	2 cut(s)	133, 397
CaiI	CAGNNNCTG	1 cut(s)	70
Cfr13I	GGNCC	4 cut(s)	38, 427, 534, 606
CseI	GACGC	1 cut(s)	512
CviAII	CATG	1 cut(s)	603
DpnI	GATC	1 cut(s)	549
DpnII	GATC	1 cut(s)	547
DriI	GACNNNNNGTC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	565
Eam1105I	GACNNNNNGTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	565
EciI	GGCGGA	1 cut(s)	639
Eco47I	GGWCC	3 cut(s)	427, 534, 606
Eco57I	CTGAAG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	536
FaeI	CATG	1 cut(s)	606
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	1 cut(s)	602
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	524
FokI	GGATG	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	524
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	1 cut(s)	524
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	39, 389
HapII	CCGG	2 cut(s)	30, 42
HgaI	GACGC	1 cut(s)	512
Hin1II	CATG	1 cut(s)	606
HincII	GTYRAC	1 cut(s)	77
HindII	GTYRAC	1 cut(s)	77
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	3 cut(s)	51, 457, 587
HpaII	CCGG	2 cut(s)	30, 42
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	77
Hpy99I	CGWCG	1 cut(s)	269
HpyCH4V	TGCA	2 cut(s)	138, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 202, 395
Hsp92II	CATG	1 cut(s)	606
Kzo9I	GATC	1 cut(s)	547
LweI	GCATC	2 cut(s)	46, 346
MaeI	CTAG	1 cut(s)	336
MalI	GATC	1 cut(s)	549
MboI	GATC	1 cut(s)	547
MboII	GAAGA	5 cut(s)	242, 269, 582, 638, 689
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	547
MhlI	GDGCHC	1 cut(s)	12
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	6 cut(s)	191, 498, 507, 527, 680, 707
MluNI	TGGCCA	1 cut(s)	389
MlyI	GAGTC	2 cut(s)	451, 581
MmeI	TCCRAC	1 cut(s)	594
MnlI	CCTC	4 cut(s)	26, 71, 453, 731
Mox20I	TGGCCA	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	389
Msp20I	TGGCCA	1 cut(s)	389
MspI	CCGG	2 cut(s)	30, 42
MspR9I	CCNGG	2 cut(s)	42, 538
MunI	CAATTG	1 cut(s)	507
MvaI	CCWGG	1 cut(s)	538
MwoI	GCNNNNNNNGC	3 cut(s)	16, 202, 395
NciI	CCSGG	1 cut(s)	42
NdeII	GATC	1 cut(s)	547
NlaIII	CATG	1 cut(s)	606
NlaIV	GGNNCC	3 cut(s)	40, 131, 608
NspV	TTCGAA	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	51
PflMI	CCANNNNNTGG	2 cut(s)	70, 603
PfoI	TCCNGGA	1 cut(s)	536
PkrI	GCNGC	1 cut(s)	525
PleI	GAGTC	2 cut(s)	451, 581
PpsI	GAGTC	2 cut(s)	451, 581
PpuMI	RGGWCCY	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	536
PspGI	CCWGG	1 cut(s)	536
PspN4I	GGNNCC	3 cut(s)	40, 131, 608
PspPI	GGNCC	4 cut(s)	38, 427, 534, 606
PspPPI	RGGWCCY	1 cut(s)	427
PstNI	CAGNNNCTG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	547
SalI	GTCGAC	1 cut(s)	75
SatI	GCNGC	1 cut(s)	524
Sau3AI	GATC	1 cut(s)	547
Sau96I	GGNCC	4 cut(s)	38, 427, 534, 606
SchI	GAGTC	2 cut(s)	451, 581
ScrFI	CCNGG	2 cut(s)	42, 538
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	9 cut(s)	37, 93, 174, 229, 348, 368, 429, 536, 664
SfaNI	GCATC	2 cut(s)	46, 346
SfcI	CTRYAG	1 cut(s)	378
SfuI	TTCGAA	1 cut(s)	245
SinI	GGWCC	3 cut(s)	427, 534, 606
Sse9I	AATT	6 cut(s)	191, 498, 507, 527, 680, 707
SsiI	CCGC	4 cut(s)	5, 494, 524, 650
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	40, 536
TaqI	TCGA	5 cut(s)	54, 76, 245, 460, 736
TasI	AATT	6 cut(s)	191, 498, 507, 527, 680, 707
TauI	GCSGC	1 cut(s)	526
TfiI	GAWTC	1 cut(s)	51
TscAI	CASTG	2 cut(s)	140, 397
TspDTI	ATGAA	1 cut(s)	626
TspRI	CASTG	2 cut(s)	140, 397
Van91I	CCANNNNNTGG	2 cut(s)	70, 603
VpaK11BI	GGWCC	3 cut(s)	427, 534, 606
XapI	RAATTY	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.