Rroxscaffold_1G00052920

Protein Iojap, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013563
Physical Location & Seq
Forward (+)
73654506 .. 73657885
3380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052920.1

Sequence Viewer

Length: 711 bp
ATGGCGGTACTCGTTACTCTGTCTTTCCCGGCAGCTGGAGCCGGAAACCGATTCTACGATGACCTCCAGAAACTGGGTCGTCTTCAAGCTCAAACTAGCCCCGCCACGATTTCTTCTCATAAATGGTTGCCCTGCAAATGCTTTTGGCAACTACCCAGAAGCAAAAAGACGTCGAGGGAATTGCTCAGATTGCGTTTGGCTCAGGGGAAAGAAGCTGAAGATAGTTTCATTCCGAATGTGAGTGAAGATACAGACGATATGTTTGATGACTTGTTTGATAAATATGGAAAGGTGGTATATAGTAGAAAGGACAAGAAGCCTCCTAGTGCAGAGCTTGATGACGATGCTGAGAGCTTAGCATTTGCTGTAGAATTGGCCAAAGTTGCAAATGAGGTAAAGGCCGGAGATATAAAGGTGCTTTTTGTTAAGCCTCTTGTATACTGGACTCGGTTTTTTATTATTGCCACAGCTTTTTCTCGTCCACAAATTGATGCAATTAGGTCCAAGATGAGAGATCTGGCAGAGAAAAAGTATGGAAAAATTCCAAACGGAGATGCTAAACCCAATTCATGGACCCTGTTGGACTTTGGTGATGTTGTAATCCATATATTTCTTCCGCCACAGCGAGCTTTCTACAACTTGGAAGAATTCTATGGTAACGCTACACCCGTTGAACTACCTTTTGAAAACCAGCCACCAATGCGAGGCTAA

Protein Analysis

236

Amino Acids

26.76

Weight (kDa)

7.68

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RsfS PF02410 124 - 218 2.6e-22 Ribosomal silencing factor during starvation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013563)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12930
fragaria_vesca FvH4_3g15760 FvH4_3g15760
malus_domestica MD10G1202500.v1.1
prunus_persica Prupe.4G139700_v2.0.a1 Prupe.4G139700_v2.0.a1
pyrus_communis pycom05g20150 pycom10g17330
rosa_chinensis RchiOBHm_Chr5g0026561
rosa_laevigata RLG00000032935
rosa_multiflora Rmu_sc0004371.1_g000009
rosa_roxburghii Rroxscaffold_1G00052920
rosa_rugosa Rorug05G0093800
rosa_samantha Rh5AG186700 Rh5BG183700 Rh5CG203600 Rh5DG186000
rosa_wichuraiana Rw5G016940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 173
AccB7I CCANNNNNTGG 2 cut(s) 73, 570
AccI GTMKAC 1 cut(s) 438
AciI CCGC 3 cut(s) 5, 102, 617
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 2 cut(s) 540, 647
AcuI CTGAAG 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 4 cut(s) 35, 73, 570, 704
AgsI TTSAA 3 cut(s) 86, 674, 686
AluBI AGCT 7 cut(s) 35, 89, 215, 334, 354, 470, 629
AluI AGCT 7 cut(s) 35, 89, 215, 334, 354, 470, 629
AlwNI CAGNNNCTG 1 cut(s) 73
AoxI GGCC 2 cut(s) 375, 399
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 2 cut(s) 540, 647
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
AspS9I GGNCC 2 cut(s) 501, 573
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 602
AvaII GGWCC 2 cut(s) 501, 573
BalI TGGCCA 1 cut(s) 377
BbsI GAAGAC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 44
BcgI CGANNNNNNTGC 2 cut(s) 163, 197
BcnI CCSGG 1 cut(s) 29
BfaI CTAG 2 cut(s) 96, 324
BfmI CTRYAG 1 cut(s) 366
BglII AGATCT 1 cut(s) 514
BisI GCNGC 1 cut(s) 33
BlpI GCTNAGC 1 cut(s) 355
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 2 cut(s) 501, 573
BmgT120I GGNCC 2 cut(s) 501, 573
BmiI GGNNCC 2 cut(s) 40, 575
BmrFI CCNGG 1 cut(s) 29
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 3 cut(s) 334, 481, 544
BmuI ACTGGG 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 74
BpmI CTGGAG 2 cut(s) 50, 57
Bpu10I CCTNAGC 1 cut(s) 201
Bpu1102I GCTNAGC 1 cut(s) 355
BpuMI CCSGG 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 170
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 73, 570, 704
Bse1I ACTGG 2 cut(s) 78, 446
BseLI CCNNNNNNNGG 4 cut(s) 35, 73, 570, 704
BseMII CTCAG 3 cut(s) 199, 215, 339
BseNI ACTGG 2 cut(s) 78, 446
BseXI GCAGC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 348
BshFI GGCC 2 cut(s) 377, 401
BsiSI CCGG 3 cut(s) 29, 42, 402
BslI CCNNNNNNNGG 4 cut(s) 35, 73, 570, 704
BsnI GGCC 2 cut(s) 377, 401
Bsp143I GATC 1 cut(s) 514
Bsp1720I GCTNAGC 1 cut(s) 355
BspACI CCGC 3 cut(s) 5, 102, 617
BspANI GGCC 2 cut(s) 377, 401
BspCNI CTCAG 3 cut(s) 198, 214, 340
BspLI GGNNCC 2 cut(s) 40, 575
BsrI ACTGG 2 cut(s) 78, 446
BssMI GATC 1 cut(s) 514
BssNAI GTATAC 1 cut(s) 439
BssNI GRCGYC 1 cut(s) 170
Bst1107I GTATAC 1 cut(s) 439
BstACI GRCGYC 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 627
BstDEI CTNAG 4 cut(s) 185, 201, 348, 355
BstKTI GATC 1 cut(s) 517
BstMBI GATC 1 cut(s) 514
BstMWI GCNNNNNNNGC 4 cut(s) 38, 190, 383, 700
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 44
BstV2I GAAGAC 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BstZ17I GTATAC 1 cut(s) 439
BsuRI GGCC 2 cut(s) 377, 401
Cac8I GCNNGC 1 cut(s) 627
CaiI CAGNNNCTG 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 501, 573
Csp6I GTAC 1 cut(s) 8
CviAII CATG 1 cut(s) 570
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 4 cut(s) 185, 201, 348, 355
DpnI GATC 1 cut(s) 516
DpnII GATC 1 cut(s) 514
EaeI YGGCCR 1 cut(s) 375
EciI GGCGGA 1 cut(s) 606
Eco47I GGWCC 2 cut(s) 501, 573
Eco57I CTGAAG 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 647
FaeI CATG 1 cut(s) 573
FatI CATG 1 cut(s) 569
FauI CCCGC 1 cut(s) 109
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 2 cut(s) 96, 324
GluI GCNGC 1 cut(s) 33
GsuI CTGGAG 2 cut(s) 50, 57
HaeIII GGCC 2 cut(s) 377, 401
HapII CCGG 3 cut(s) 29, 42, 402
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 1 cut(s) 573
HinfI GANTC 2 cut(s) 51, 445
HpaII CCGG 3 cut(s) 29, 42, 402
HphI GGTGA 1 cut(s) 602
Hpy166II GTNNAC 2 cut(s) 439, 482
Hpy188I TCNGA 2 cut(s) 188, 234
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 2 cut(s) 439, 482
Hpy99I CGWCG 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 4 cut(s) 135, 329, 386, 494
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 190, 383, 700
HpyF3I CTNAG 4 cut(s) 185, 201, 348, 355
HpySE526I ACGT 1 cut(s) 170
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 1 cut(s) 573
Kzo9I GATC 1 cut(s) 514
LmnI GCTCC 1 cut(s) 38
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 3 cut(s) 334, 481, 544
MaeI CTAG 2 cut(s) 96, 324
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 2 cut(s) 13, 656
MalI GATC 1 cut(s) 516
MboI GATC 1 cut(s) 514
MboII GAAGA 6 cut(s) 74, 105, 230, 257, 605, 656
MflI RGATCY 1 cut(s) 514
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 7 cut(s) 179, 371, 486, 495, 540, 565, 647
MluNI TGGCCA 1 cut(s) 377
MlyI GAGTC 1 cut(s) 439
MmeI TCCRAC 1 cut(s) 561
MnlI CCTC 6 cut(s) 74, 168, 330, 385, 441, 698
Mox20I TGGCCA 1 cut(s) 377
MscI TGGCCA 1 cut(s) 377
MseI TTAA 1 cut(s) 426
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 3 cut(s) 29, 42, 402
MspR9I CCNGG 1 cut(s) 29
MwoI GCNNNNNNNGC 4 cut(s) 38, 190, 383, 700
NciI CCSGG 1 cut(s) 29
NdeII GATC 1 cut(s) 514
NlaIII CATG 1 cut(s) 573
NlaIV GGNNCC 2 cut(s) 40, 575
PcsI WCGNNNNNNNCGW 1 cut(s) 666
PfeI GAWTC 1 cut(s) 51
PflMI CCANNNNNTGG 2 cut(s) 73, 570
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PspN4I GGNNCC 2 cut(s) 40, 575
PspPI GGNCC 2 cut(s) 501, 573
PstNI CAGNNNCTG 1 cut(s) 73
PsuI RGATCY 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 1 cut(s) 514
Sau96I GGNCC 2 cut(s) 501, 573
SchI GAGTC 1 cut(s) 439
ScrFI CCNGG 1 cut(s) 29
SfaNI GCATC 3 cut(s) 334, 481, 544
SfcI CTRYAG 1 cut(s) 366
SinI GGWCC 2 cut(s) 501, 573
Sse9I AATT 7 cut(s) 179, 371, 486, 495, 540, 565, 647
SsiI CCGC 3 cut(s) 5, 102, 617
SspMI CTAG 2 cut(s) 96, 324
StyD4I CCNGG 1 cut(s) 27
TaiI ACGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 173
TasI AATT 7 cut(s) 179, 371, 486, 495, 540, 565, 647
TfiI GAWTC 1 cut(s) 51
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 217, 558
TspGWI ACGGA 1 cut(s) 564
Van91I CCANNNNNTGG 2 cut(s) 73, 570
VpaK11BI GGWCC 2 cut(s) 501, 573
XapI RAATTY 2 cut(s) 540, 647
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 2 cut(s) 96, 324
ZraI GACGTC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.