Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013563

Physical Location & Seq

Genomic Coordinates Forward (+)

30024603 .. 30026886

Gene Structure 2284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1202500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTCGGTTCTCATTACTCTGTCTCTTGCCGGAGCTGGCGCCGGATACCGGTTCTCCGACGACCTCCAGAAGCTAGGTCGTCTTCAACCTAAGCTCTGTCAAAGTCCCACCGCGCTTTTTCCTCATAAGTGCTTTCACTGCCAGTGCTTTTGGCAAGTGCCCAGAAGCAAGAACCTAACTTTGAAGTCAAGGGAATTGCCAAGATTACGTTTGGCTCGCGCCAAGGAAGCTGAAGATAGTTTCACTCCGAATGTAAGCGAAGATACGGACGATATGTTTGATGACTTGTTTGATAAATATGGAAAGGTGGTATATAGTAGCAATGACAGGAAGTCTCCTAGCACAGAGCTTGATGATGATGCTGAAACCTTGTCATTTGCTGTTGCAATGGCCAATGTAGCAAATGACGTAAAAGCAGGAGATATAAAGGTCCTATTTGTGAAGCCTCTTGTATATTGGACTCGGTTTTTTATCATTGCCACGGCATTTTCTCGTCCGCAAAGTGATGCAATTGCGTCCAGGATAAGAGATATGGCTGAGGAAAAGTATGGAAGAGTTCCATCTGGGGACTCAAAACCCAACTCATGGACCCTGTTGGACTTCGGTGATGTTGTTATTCATATATTTCTTCCACCACAGCGAGCTTTCTACAACTTGGAAGAATTCTACGCTAATGCAACGCCCGTTGAATTGCCTTTTGAGAACCAGTCACCTTTTCGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006417 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

242

Amino Acids

27.22

Weight (kDa)

5.7

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	130 - 223	6.1e-23	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12930
fragaria_vesca	FvH4_3g15760 FvH4_3g15760
malus_domestica	MD10G1202500.v1.1
prunus_persica	Prupe.4G139700_v2.0.a1 Prupe.4G139700_v2.0.a1
pyrus_communis	pycom05g20150 pycom10g17330
rosa_chinensis	RchiOBHm_Chr5g0026561
rosa_laevigata	RLG00000032935
rosa_multiflora	Rmu_sc0004371.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052920
rosa_rugosa	Rorug05G0093800
rosa_samantha	Rh5AG186700 Rh5BG183700 Rh5CG203600 Rh5DG186000
rosa_wichuraiana	Rw5G016940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	585
AccII	CGCG	2 cut(s)	113, 219
AciI	CCGC	2 cut(s)	111, 497
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	662
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	39
AfiI	CCNNNNNNNGG	3 cut(s)	48, 585, 719
AgeI	ACCGGT	1 cut(s)	48
AgsI	TTSAA	3 cut(s)	86, 184, 689
AhdI	GACNNNNNGTC	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	518
AluBI	AGCT	6 cut(s)	35, 73, 94, 230, 349, 644
AluI	AGCT	6 cut(s)	35, 73, 94, 230, 349, 644
Alw26I	GTCTC	2 cut(s)	27, 339
AoxI	GGCC	1 cut(s)	390
ApoI	RAATTY	1 cut(s)	662
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AsiGI	ACCGGT	1 cut(s)	48
AspLEI	GCGC	3 cut(s)	41, 115, 221
AspS9I	GGNCC	2 cut(s)	430, 588
AsuHPI	GGTGA	2 cut(s)	617, 702
AvaII	GGWCC	2 cut(s)	430, 588
BaeGI	GKGCMC	1 cut(s)	162
BalI	TGGCCA	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	74
BbvCI	CCTCAGC	1 cut(s)	537
BccI	CCATC	1 cut(s)	568
BceAI	ACGGC	1 cut(s)	498
BciT130I	CCWGG	1 cut(s)	520
BciVI	GTATCC	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	27, 339
BfaI	CTAG	2 cut(s)	74, 339
BfoI	RGCGCY	1 cut(s)	42
BfuI	GTATCC	1 cut(s)	38
Bme1390I	CCNGG	1 cut(s)	520
Bme18I	GGWCC	2 cut(s)	430, 588
BmeRI	GACNNNNNGTC	1 cut(s)	331
BmgT120I	GGNCC	2 cut(s)	430, 588
BmiI	GGNNCC	2 cut(s)	40, 590
BmrFI	CCNGG	1 cut(s)	520
BmsI	GCATC	2 cut(s)	349, 496
BpiI	GAAGAC	1 cut(s)	74
BpmI	CTGGAG	1 cut(s)	50
Bpu10I	CCTNAGC	2 cut(s)	90, 537
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	222, 480
BsaWI	WCCGGW	1 cut(s)	48
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 585, 719
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	142, 706
Bse3DI	GCAATG	3 cut(s)	328, 393, 474
BseBI	CCWGG	1 cut(s)	520
BseDI	CCNNGG	2 cut(s)	222, 480
BseLI	CCNNNNNNNGG	3 cut(s)	48, 585, 719
BseMI	GCAATG	3 cut(s)	328, 393, 474
BseMII	CTCAG	1 cut(s)	528
BseNI	ACTGG	2 cut(s)	142, 706
BseSI	GKGCMC	1 cut(s)	162
Bsh1236I	CGCG	2 cut(s)	113, 219
BshFI	GGCC	1 cut(s)	392
BshNI	GGYRCC	1 cut(s)	38
BshTI	ACCGGT	1 cut(s)	48
BsiSI	CCGG	3 cut(s)	30, 42, 49
BslFI	GGGAC	2 cut(s)	90, 581
BslI	CCNNNNNNNGG	3 cut(s)	48, 585, 719
BsmAI	GTCTC	2 cut(s)	27, 339
BsmFI	GGGAC	2 cut(s)	90, 581
BsnI	GGCC	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	162
BspACI	CCGC	2 cut(s)	111, 497
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	1 cut(s)	529
BspFNI	CGCG	2 cut(s)	113, 219
BspLI	GGNNCC	2 cut(s)	40, 590
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	3 cut(s)	328, 393, 474
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	142, 706
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	222, 480
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	520
Bst6I	CTCTTC	1 cut(s)	547
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	37, 217, 642
BstDEI	CTNAG	2 cut(s)	90, 537
BstDSI	CCRYGG	1 cut(s)	480
BstENI	CCTNNNNNAGG	1 cut(s)	717
BstFNI	CGCG	2 cut(s)	113, 219
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	3 cut(s)	41, 115, 221
BstMAI	GTCTC	2 cut(s)	27, 339
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 227, 398
BstNI	CCWGG	1 cut(s)	520
BstSCI	CCNGG	1 cut(s)	518
BstSLI	GKGCMC	1 cut(s)	162
BstUI	CGCG	2 cut(s)	113, 219
BstV2I	GAAGAC	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	392
BtgI	CCRYGG	1 cut(s)	480
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	136, 149
Cac8I	GCNNGC	3 cut(s)	37, 217, 642
CfoI	GCGC	3 cut(s)	41, 115, 221
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	430, 588
CseI	GACGC	1 cut(s)	504
CspAI	ACCGGT	1 cut(s)	48
CviAII	CATG	1 cut(s)	585
DdeI	CTNAG	2 cut(s)	90, 537
DinI	GGCGCC	1 cut(s)	40
DriI	GACNNNNNGTC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	547
Eam1105I	GACNNNNNGTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	547
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	430, 588
Eco57I	CTGAAG	1 cut(s)	252
EcoNI	CCTNNNNNAGG	1 cut(s)	717
EcoO109I	RGGNCCY	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	518
EcoT14I	CCWWGG	1 cut(s)	222
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	588
FaqI	GGGAC	2 cut(s)	90, 581
FatI	CATG	1 cut(s)	584
FspBI	CTAG	2 cut(s)	74, 339
GlaI	GCGC	3 cut(s)	40, 114, 220
GsuI	CTGGAG	1 cut(s)	50
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	3 cut(s)	30, 42, 49
HgaI	GACGC	1 cut(s)	504
HhaI	GCGC	3 cut(s)	41, 115, 221
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	588
Hin6I	GCGC	3 cut(s)	39, 113, 219
HinP1I	GCGC	3 cut(s)	39, 113, 219
HinfI	GANTC	2 cut(s)	460, 569
HpaII	CCGG	3 cut(s)	30, 42, 49
HphI	GGTGA	2 cut(s)	617, 702
Hpy188I	TCNGA	2 cut(s)	58, 249
Hpy188III	TCNNGA	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	62
HpyCH4IV	ACGT	2 cut(s)	208, 408
HpyCH4V	TGCA	3 cut(s)	386, 509, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 227, 398
HpyF3I	CTNAG	2 cut(s)	90, 537
HpySE526I	ACGT	2 cut(s)	208, 408
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	588
HspAI	GCGC	3 cut(s)	39, 113, 219
KasI	GGCGCC	1 cut(s)	38
LmnI	GCTCC	1 cut(s)	32
LweI	GCATC	2 cut(s)	349, 496
MaeI	CTAG	2 cut(s)	74, 339
MaeII	ACGT	2 cut(s)	208, 408
MaeIII	GTNAC	1 cut(s)	708
MboII	GAAGA	6 cut(s)	74, 245, 272, 564, 620, 671
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	162
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	4 cut(s)	194, 510, 662, 689
MluNI	TGGCCA	1 cut(s)	392
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	2 cut(s)	454, 563
MmeI	TCCRAC	2 cut(s)	81, 576
MnlI	CCTC	5 cut(s)	74, 132, 456, 532, 713
Mox20I	TGGCCA	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	392
Msp20I	TGGCCA	1 cut(s)	392
MspI	CCGG	3 cut(s)	30, 42, 49
MspR9I	CCNGG	1 cut(s)	520
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	520
MvnI	CGCG	2 cut(s)	113, 219
MwoI	GCNNNNNNNGC	3 cut(s)	138, 227, 398
NarI	GGCGCC	1 cut(s)	39
NlaIII	CATG	1 cut(s)	588
NlaIV	GGNNCC	2 cut(s)	40, 590
NmuCI	GTSAC	1 cut(s)	708
PflMI	CCANNNNNTGG	1 cut(s)	585
PfoI	TCCNGGA	1 cut(s)	518
PinAI	ACCGGT	1 cut(s)	48
PleI	GAGTC	2 cut(s)	454, 563
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	2 cut(s)	454, 563
PpuMI	RGGWCCY	1 cut(s)	430
Psp5II	RGGWCCY	1 cut(s)	430
Psp6I	CCWGG	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	518
PspN4I	GGNNCC	2 cut(s)	40, 590
PspPI	GGNCC	2 cut(s)	430, 588
PspPPI	RGGWCCY	1 cut(s)	430
Sau96I	GGNCC	2 cut(s)	430, 588
SchI	GAGTC	2 cut(s)	454, 563
ScrFI	CCNGG	1 cut(s)	520
SduI	GDGCHC	1 cut(s)	162
SfaNI	GCATC	2 cut(s)	349, 496
SfoI	GGCGCC	1 cut(s)	40
SinI	GGWCC	2 cut(s)	430, 588
Sse9I	AATT	4 cut(s)	194, 510, 662, 689
SsiI	CCGC	2 cut(s)	111, 497
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	2 cut(s)	74, 339
StyD4I	CCNGG	1 cut(s)	518
StyI	CCWWGG	1 cut(s)	222
TaiI	ACGT	2 cut(s)	211, 411
TaqI	TCGA	1 cut(s)	718
TasI	AATT	4 cut(s)	194, 510, 662, 689
TscAI	CASTG	2 cut(s)	143, 149
TseFI	GTSAC	1 cut(s)	708
Tsp45I	GTSAC	1 cut(s)	708
TspDTI	ATGAA	1 cut(s)	608
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	2 cut(s)	143, 149
Van91I	CCANNNNNTGG	1 cut(s)	585
VpaK11BI	GGWCC	2 cut(s)	430, 588
XagI	CCTNNNNNAGG	1 cut(s)	717
XapI	RAATTY	1 cut(s)	662
XspI	CTAG	2 cut(s)	74, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.