Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013563

Physical Location & Seq

Genomic Coordinates Forward (+)

23022350 .. 23024882

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20150.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGACCATTGCTTCCGGTGATATCGTATATTTTCTCTCATCTTCAAATATCTTTGCAATCGCACCAAAAACCAAAACACCAAAAATGGCGGTGCTCATTACTCTGTCTGTCGCCGGAGCTGGTGCTGGATTCCGGTTCTCCGACGACCTCCAAAAGCTGGGTTGTCTTCAACCCAGGCTCTGTCAAAGTCCCACCACGATTTTTCCTCATAAGTGCTTGCACTGCAAGTGCTTTTGGCAAGCGCCTAGAAGCAAGAACTTAAATTTGAAGTCCAGGGAATTGCCCAGATTGCGTTTGGCTCGCGCCAAGGAAGCTGAAGATAGTTTCACTCCGAATGTAAGCGAAGATACAGACGATATGTTTGATGACTTGTTTGATAAATATGGAAAGGTGGTATATAGTAGCAATGACAGGAAGTCACCTAGCACAGAGCTTGATGATGATGCTGAAAGCTTATCATTTGCTGTTGCAATGGCCAACGTTGCAAATGACGTAAAAGCAGGAGATATAAAGGTCCTATTTGTGAAGCCTCTTGTGTATTGGACTCGGTTTTTCATAATTGCCACAGCATTTTCTCGTCCGCAAAGTGATGCAATTGCGTCCCGGATAAGAGATCTGGCAGAGGAGAAGTATGGAAGAGTTTCATCTGGGGACTCAAAACCCAACTCATGGACCCTGTTGGATTTTGGTGATGTTGTTATTCATATATTTCTTCCACCACAGCGAGCTTTCTACAACTTGGAAGAATTCTATGCTAATGCTACACCCGTTAAATTGCCTTTTGAAAACCAGTCACCATTTCGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006417 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

270

Amino Acids

30.07

Weight (kDa)

7.59

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12930
fragaria_vesca	FvH4_3g15760 FvH4_3g15760
malus_domestica	MD10G1202500.v1.1
prunus_persica	Prupe.4G139700_v2.0.a1 Prupe.4G139700_v2.0.a1
pyrus_communis	pycom05g20150 pycom10g17330
rosa_chinensis	RchiOBHm_Chr5g0026561
rosa_laevigata	RLG00000032935
rosa_multiflora	Rmu_sc0004371.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052920
rosa_rugosa	Rorug05G0093800
rosa_samantha	Rh5AG186700 Rh5BG183700 Rh5CG203600 Rh5DG186000
rosa_wichuraiana	Rw5G016940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	157, 669
AccII	CGCG	1 cut(s)	303
AciI	CCGC	2 cut(s)	89, 581
AclI	AACGTT	1 cut(s)	480
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	2 cut(s)	262, 746
AcuI	CTGAAG	1 cut(s)	336
AfiI	CCNNNNNNNGG	3 cut(s)	157, 669, 803
AgsI	TTSAA	4 cut(s)	45, 170, 268, 785
AhdI	GACNNNNNGTC	1 cut(s)	415
AjnI	CCWGG	2 cut(s)	173, 272
AluBI	AGCT	6 cut(s)	119, 157, 314, 433, 453, 728
AluI	AGCT	6 cut(s)	119, 157, 314, 433, 453, 728
Alw21I	GWGCWC	1 cut(s)	96
AlwNI	CAGNNNCTG	1 cut(s)	180
AoxI	GGCC	1 cut(s)	474
ApoI	RAATTY	2 cut(s)	262, 746
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
Asp700I	GAANNNNTTC	1 cut(s)	640
AspLEI	GCGC	2 cut(s)	244, 305
AspS9I	GGNCC	2 cut(s)	514, 672
AsuC2I	CCSGG	1 cut(s)	604
AsuHPI	GGTGA	4 cut(s)	29, 411, 701, 786
AvaII	GGWCC	2 cut(s)	514, 672
BalI	TGGCCA	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	96
BccI	CCATC	1 cut(s)	602
BciT130I	CCWGG	2 cut(s)	175, 274
BcnI	CCSGG	1 cut(s)	604
BfaI	CTAG	2 cut(s)	246, 423
BfoI	RGCGCY	1 cut(s)	245
BfuI	GTATCC	1 cut(s)	870
BglII	AGATCT	1 cut(s)	613
Bme1390I	CCNGG	3 cut(s)	175, 274, 604
Bme18I	GGWCC	2 cut(s)	514, 672
BmeRI	GACNNNNNGTC	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	514, 672
BmiI	GGNNCC	1 cut(s)	674
BmrFI	CCNGG	3 cut(s)	175, 274, 604
BmsI	GCATC	2 cut(s)	433, 580
BpiI	GAAGAC	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	604
BsaJI	CCNNGG	3 cut(s)	173, 273, 306
BsaWI	WCCGGW	2 cut(s)	14, 132
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 669, 803
Bse1I	ACTGG	1 cut(s)	790
Bse3DI	GCAATG	3 cut(s)	6, 412, 477
BseBI	CCWGG	2 cut(s)	175, 274
BseDI	CCNNGG	3 cut(s)	173, 273, 306
BseLI	CCNNNNNNNGG	3 cut(s)	157, 669, 803
BseMI	GCAATG	3 cut(s)	6, 412, 477
BseNI	ACTGG	1 cut(s)	790
BseRI	GAGGAG	1 cut(s)	638
BseYI	CCCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	476
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	4 cut(s)	15, 114, 133, 604
BslFI	GGGAC	3 cut(s)	174, 586, 665
BslI	CCNNNNNNNGG	3 cut(s)	157, 669, 803
BsmFI	GGGAC	3 cut(s)	174, 586, 665
BsnI	GGCC	1 cut(s)	476
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	613
BspACI	CCGC	2 cut(s)	89, 581
BspANI	GGCC	1 cut(s)	476
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	674
BsrDI	GCAATG	3 cut(s)	6, 412, 477
BsrI	ACTGG	1 cut(s)	790
BssECI	CCNNGG	3 cut(s)	173, 273, 306
BssMI	GATC	1 cut(s)	613
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	2 cut(s)	175, 274
Bst6I	CTCTTC	1 cut(s)	631
BstC8I	GCNNGC	4 cut(s)	218, 240, 301, 726
BstFNI	CGCG	1 cut(s)	303
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	2 cut(s)	244, 305
BstKTI	GATC	1 cut(s)	616
BstMBI	GATC	1 cut(s)	613
BstMWI	GCNNNNNNNGC	4 cut(s)	222, 289, 311, 482
BstNI	CCWGG	2 cut(s)	175, 274
BstSCI	CCNGG	3 cut(s)	173, 272, 602
BstUI	CGCG	1 cut(s)	303
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	476
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	4 cut(s)	218, 240, 301, 726
CaiI	CAGNNNCTG	1 cut(s)	180
CfoI	GCGC	2 cut(s)	244, 305
Cfr13I	GGNCC	2 cut(s)	514, 672
CseI	GACGC	1 cut(s)	588
CviAII	CATG	1 cut(s)	669
DpnI	GATC	1 cut(s)	615
DpnII	GATC	1 cut(s)	613
DriI	GACNNNNNGTC	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	631
Eam1105I	GACNNNNNGTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	631
Eco130I	CCWWGG	1 cut(s)	306
Eco32I	GATATC	1 cut(s)	22
Eco47I	GGWCC	2 cut(s)	514, 672
Eco57I	CTGAAG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	514
EcoRI	GAATTC	1 cut(s)	746
EcoRII	CCWGG	2 cut(s)	173, 272
EcoRV	GATATC	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	1 cut(s)	672
FaqI	GGGAC	3 cut(s)	174, 586, 665
FatI	CATG	1 cut(s)	668
FspBI	CTAG	2 cut(s)	246, 423
GlaI	GCGC	2 cut(s)	243, 304
GsaI	CCCAGC	1 cut(s)	161
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	4 cut(s)	15, 114, 133, 604
HgaI	GACGC	1 cut(s)	588
HhaI	GCGC	2 cut(s)	244, 305
Hin1II	CATG	1 cut(s)	672
Hin6I	GCGC	2 cut(s)	242, 303
HinP1I	GCGC	2 cut(s)	242, 303
HindIII	AAGCTT	1 cut(s)	451
HinfI	GANTC	3 cut(s)	129, 544, 653
HpaII	CCGG	4 cut(s)	15, 114, 133, 604
HphI	GGTGA	4 cut(s)	29, 411, 701, 786
Hpy188I	TCNGA	2 cut(s)	142, 333
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	7 cut(s)	148, 335, 541, 681, 867, 950, 1125
HpyCH4IV	ACGT	2 cut(s)	480, 492
HpyCH4V	TGCA	6 cut(s)	56, 220, 225, 470, 485, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	222, 289, 311, 482
HpySE526I	ACGT	2 cut(s)	480, 492
Hsp92II	CATG	1 cut(s)	672
HspAI	GCGC	2 cut(s)	242, 303
Kzo9I	GATC	1 cut(s)	613
LmnI	GCTCC	1 cut(s)	116
LweI	GCATC	2 cut(s)	433, 580
MaeI	CTAG	2 cut(s)	246, 423
MaeII	ACGT	2 cut(s)	480, 492
MaeIII	GTNAC	2 cut(s)	417, 792
MalI	GATC	1 cut(s)	615
MboI	GATC	1 cut(s)	613
MboII	GAAGA	7 cut(s)	33, 158, 329, 356, 648, 704, 755
MfeI	CAATTG	1 cut(s)	594
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	96
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	6 cut(s)	262, 278, 558, 594, 746, 773
MluNI	TGGCCA	1 cut(s)	476
MlyI	GAGTC	2 cut(s)	538, 647
MmeI	TCCRAC	2 cut(s)	165, 660
MnlI	CCTC	5 cut(s)	158, 216, 540, 616, 797
Mox20I	TGGCCA	1 cut(s)	476
MroXI	GAANNNNTTC	1 cut(s)	640
MscI	TGGCCA	1 cut(s)	476
MseI	TTAA	2 cut(s)	260, 771
Msp20I	TGGCCA	1 cut(s)	476
MspI	CCGG	4 cut(s)	15, 114, 133, 604
MspR9I	CCNGG	3 cut(s)	175, 274, 604
MunI	CAATTG	1 cut(s)	594
MvaI	CCWGG	2 cut(s)	175, 274
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	4 cut(s)	222, 289, 311, 482
NciI	CCSGG	1 cut(s)	604
NdeII	GATC	1 cut(s)	613
NlaIII	CATG	1 cut(s)	672
NlaIV	GGNNCC	1 cut(s)	674
NmuCI	GTSAC	2 cut(s)	417, 792
PdmI	GAANNNNTTC	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	129
PflMI	CCANNNNNTGG	2 cut(s)	157, 669
PfoI	TCCNGGA	1 cut(s)	602
PleI	GAGTC	2 cut(s)	538, 647
PpsI	GAGTC	2 cut(s)	538, 647
PpuMI	RGGWCCY	1 cut(s)	514
Psp1406I	AACGTT	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	514
Psp6I	CCWGG	2 cut(s)	173, 272
PspFI	CCCAGC	1 cut(s)	157
PspGI	CCWGG	2 cut(s)	173, 272
PspN4I	GGNNCC	1 cut(s)	674
PspPI	GGNCC	2 cut(s)	514, 672
PspPPI	RGGWCCY	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	613
SaqAI	TTAA	2 cut(s)	260, 771
Sau3AI	GATC	1 cut(s)	613
Sau96I	GGNCC	2 cut(s)	514, 672
SchI	GAGTC	2 cut(s)	538, 647
ScrFI	CCNGG	3 cut(s)	175, 274, 604
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	2 cut(s)	433, 580
SinI	GGWCC	2 cut(s)	514, 672
Sse9I	AATT	6 cut(s)	262, 278, 558, 594, 746, 773
SsiI	CCGC	2 cut(s)	89, 581
SspMI	CTAG	2 cut(s)	246, 423
StyD4I	CCNGG	3 cut(s)	173, 272, 602
StyI	CCWWGG	1 cut(s)	306
TaiI	ACGT	2 cut(s)	483, 495
TaqI	TCGA	1 cut(s)	802
TasI	AATT	6 cut(s)	262, 278, 558, 594, 746, 773
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	2 cut(s)	260, 771
Tru9I	TTAA	2 cut(s)	260, 771
TscAI	CASTG	1 cut(s)	227
TseFI	GTSAC	2 cut(s)	417, 792
Tsp45I	GTSAC	2 cut(s)	417, 792
TspDTI	ATGAA	3 cut(s)	544, 633, 692
TspRI	CASTG	1 cut(s)	227
Van91I	CCANNNNNTGG	2 cut(s)	157, 669
VpaK11BI	GGWCC	2 cut(s)	514, 672
XapI	RAATTY	2 cut(s)	262, 746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	640
XspI	CTAG	2 cut(s)	246, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.