AT3G12955

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015978
Physical Location & Seq
Reverse (-)
4135406 .. 4136143
738 bp
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UTR
Exon/CDS
Intron
AT3G12955.1

Sequence Viewer

Length: 420 bp
ATGATAAAGAAGATGAGGTTGATGATGATGCTCAGGAGATGCAAGAGCGTGTCCACACAATTAGGTCGTTCATATTCTTACACAAGTCTCAGATCCAAATCGGCCAGGAGAGATCCACAAGACCATCTCCAAGACGTTGACCAGAGTCCTACACCGTCTATGTACCAGACAGTGTTGGTTGGACGTACGAAGAAACCTTACTTGATCAGTAAGAAACACTTGAAGCACCCTCTGCTTAACGCTCTTGTAGAGAAGCAACAGAGATACGAAGAAGACGATAATGAAGATGGAAGTTGTATAATTACGGTGAAATGTGAGGTTGTTTTGTTTGACCATCTTCTGTGGATGCTCGAATACGGTGACGAAGTTCACATATTAGAGTCTCTAGATGACTTTGCTCATCTCTATCTCTCCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

139

Amino Acids

16.3

Weight (kDa)

7.75

Isoelectric Point (pI)

60.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 31 - 117 8.2e-15 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12955
fragaria_vesca FvH4_3g15820
malus_domestica MD05G1219800.v1.1 MD10G1202100.v1.1
prunus_persica Prupe.4G140200_v2.0.a1
pyrus_communis pycom05g20110 pycom10g17290
rosa_chinensis RchiOBHm_Chr5g0026611
rosa_multiflora Rmu_sc0018952.1_g000005
rosa_rugosa Rorug05G0094200
rosa_samantha Rh5AG187600 Rh5BG184100 Rh5CG204100 Rh5DG186400
rosa_wichuraiana Rw5G016990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 87, 107
AcoI YGGCCR 1 cut(s) 102
AfaI GTAC 2 cut(s) 164, 187
AgsI TTSAA 1 cut(s) 223
AjnI CCWGG 1 cut(s) 104
Alw26I GTCTC 2 cut(s) 92, 387
AlwI GGATC 2 cut(s) 87, 107
AoxI GGCC 1 cut(s) 102
AsuHPI GGTGA 2 cut(s) 319, 371
BarI GAAGNNNNNNTAC 2 cut(s) 182, 214
BbsI GAAGAC 1 cut(s) 279
BccI CCATC 3 cut(s) 132, 281, 342
BciT130I CCWGG 1 cut(s) 106
BclI TGATCA 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 92, 387
BfaI CTAG 1 cut(s) 386
Bme1390I CCNGG 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 3 cut(s) 18, 29, 336
BoxI GACNNNNGTC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 279
Bpu10I CCTNAGC 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 97
Bse8I GATNNNNATC 1 cut(s) 97
BseBI CCWGG 1 cut(s) 106
BseGI GGATG 1 cut(s) 351
BseJI GATNNNNATC 1 cut(s) 97
BseMII CTCAG 2 cut(s) 46, 103
BshFI GGCC 1 cut(s) 104
BsiWI CGTACG 1 cut(s) 185
BsmAI GTCTC 2 cut(s) 92, 387
BsnI GGCC 1 cut(s) 104
Bsp143I GATC 3 cut(s) 92, 112, 204
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 2 cut(s) 45, 102
BspPI GGATC 2 cut(s) 87, 107
BssMI GATC 3 cut(s) 92, 112, 204
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 4 cut(s) 156, 172, 307, 359
BstAPI GCANNNNNTGC 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 32, 89
BstF5I GGATG 1 cut(s) 351
BstKTI GATC 3 cut(s) 95, 115, 207
BstMAI GTCTC 2 cut(s) 92, 387
BstMBI GATC 3 cut(s) 92, 112, 204
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNI CCWGG 1 cut(s) 106
BstPAI GACNNNNGTC 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 2 cut(s) 92, 112
BstYI RGATCY 2 cut(s) 92, 112
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 177
Csp6I GTAC 2 cut(s) 163, 186
CviJI RGCY 1 cut(s) 104
CviKI_1 RGCY 1 cut(s) 104
CviQI GTAC 2 cut(s) 163, 186
DdeI CTNAG 2 cut(s) 32, 89
DpnI GATC 3 cut(s) 94, 114, 206
DpnII GATC 3 cut(s) 92, 112, 204
EaeI YGGCCR 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 104
FaiI YATR 4 cut(s) 73, 161, 299, 374
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FbaI TGATCA 1 cut(s) 204
FokI GGATG 1 cut(s) 358
FspBI CTAG 1 cut(s) 386
HaeIII GGCC 1 cut(s) 104
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 2 cut(s) 145, 380
HphI GGTGA 2 cut(s) 319, 371
Hpy166II GTNNAC 3 cut(s) 54, 139, 370
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 2 cut(s) 34, 386
Hpy8I GTNNAC 3 cut(s) 54, 139, 370
HpyCH4III ACNGT 4 cut(s) 156, 172, 307, 359
HpyCH4IV ACGT 2 cut(s) 135, 184
HpyCH4V TGCA 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpyF3I CTNAG 2 cut(s) 32, 89
HpySE526I ACGT 2 cut(s) 135, 184
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 3 cut(s) 92, 112, 204
LpnPI CCDG 5 cut(s) 19, 91, 118, 155, 179
LweI GCATC 3 cut(s) 18, 29, 336
MaeI CTAG 1 cut(s) 386
MaeII ACGT 2 cut(s) 135, 184
MaeIII GTNAC 1 cut(s) 359
MalI GATC 3 cut(s) 94, 114, 206
MboI GATC 3 cut(s) 92, 112, 204
MboII GAAGA 6 cut(s) 22, 202, 281, 284, 296, 329
MflI RGATCY 2 cut(s) 92, 112
MluCI AATT 2 cut(s) 59, 300
MlyI GAGTC 2 cut(s) 154, 389
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 3 cut(s) 9, 240, 310
MseI TTAA 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 232
NdeII GATC 3 cut(s) 92, 112, 204
NmuCI GTSAC 1 cut(s) 359
PcsI WCGNNNNNNNCGW 1 cut(s) 273
Pfl23II CGTACG 1 cut(s) 185
PleI GAGTC 2 cut(s) 153, 388
PpsI GAGTC 2 cut(s) 153, 388
PshAI GACNNNNGTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspLI CGTACG 1 cut(s) 185
PsuI RGATCY 2 cut(s) 92, 112
RsaI GTAC 2 cut(s) 164, 187
RsaNI GTAC 2 cut(s) 163, 186
SaqAI TTAA 1 cut(s) 237
Sau3AI GATC 3 cut(s) 92, 112, 204
SchI GAGTC 2 cut(s) 154, 389
ScrFI CCNGG 1 cut(s) 106
SetI ASST 6 cut(s) 20, 67, 138, 187, 199, 321
SfaNI GCATC 3 cut(s) 18, 29, 336
Sse9I AATT 2 cut(s) 59, 300
SspMI CTAG 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 104
TaaI ACNGT 4 cut(s) 156, 172, 307, 359
TaiI ACGT 2 cut(s) 138, 187
TaqI TCGA 1 cut(s) 351
TasI AATT 2 cut(s) 59, 300
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 2 cut(s) 60, 297
TspRI CASTG 1 cut(s) 177
XbaI TCTAGA 1 cut(s) 385
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.