Prupe.4G140200_v2.0.a1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015978
Physical Location & Seq
Reverse (-)
7830216 .. 7831392
1177 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G140200.1

Sequence Viewer

Length: 408 bp
ATGAAGAAAATCAATTTTTTGCTTAGGAAGTGCAAGAGCTTGTCAAGGCAGCTAGGGAGATCTTCATCATACAGTAGCCTAAGGTCCAAATCCACAAGAGAAGATTTATGGGTTGGCCATGGAGACAAAATGCATGAAATTGATCATCACCACCACCAAACTATAATCTTTGTGGGAAGCACAAGAAAGCGCTATGTCATTAGTTCCAAGTACCTCAACCATCCTTTGTTGAATGCTTTAATTGACAAGTCCTCAAAGCAAAAGCAAGGAGGAGAAGCAGAAGATATCTTGGTCAACTGTGAGGTGGTTCTCTTTGACCACTTGATATGGATGCTAGAGAATGCTGCTGATCCAAGCTTTGGTGCTTCAGAGTCCTTGGAGGAACTGGCTGCTCTCTATGTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

136

Amino Acids

15.43

Weight (kDa)

8.55

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12955
fragaria_vesca FvH4_3g15820
malus_domestica MD05G1219800.v1.1 MD10G1202100.v1.1
prunus_persica Prupe.4G140200_v2.0.a1
pyrus_communis pycom05g20110 pycom10g17290
rosa_chinensis RchiOBHm_Chr5g0026611
rosa_multiflora Rmu_sc0018952.1_g000005
rosa_rugosa Rorug05G0094200
rosa_samantha Rh5AG187600 Rh5BG184100 Rh5CG204100 Rh5DG186400
rosa_wichuraiana Rw5G016990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 359
AclWI GGATC 1 cut(s) 344
AcoI YGGCCR 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 1 cut(s) 212
AfeI AGCGCT 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 1 cut(s) 232
AluBI AGCT 3 cut(s) 39, 52, 357
AluI AGCT 3 cut(s) 39, 52, 357
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 1 cut(s) 344
Aor51HI AGCGCT 1 cut(s) 191
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 3 cut(s) 49, 344, 389
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 84
AxyI CCTNAGG 1 cut(s) 80
BalI TGGCCA 1 cut(s) 117
BbvI GCAGC 3 cut(s) 61, 331, 376
BccI CCATC 1 cut(s) 228
BclI TGATCA 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 2 cut(s) 53, 335
BfoI RGCGCY 1 cut(s) 193
BglII AGATCT 1 cut(s) 59
BisI GCNGC 3 cut(s) 50, 345, 390
BlsI GCNGC 3 cut(s) 51, 346, 391
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmsI GCATC 1 cut(s) 321
Bpu10I CCTNAGC 1 cut(s) 23
BsaBI GATNNNNATC 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 118, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse1I ACTGG 1 cut(s) 390
Bse21I CCTNAGG 1 cut(s) 80
Bse8I GATNNNNATC 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 118, 375
BseGI GGATG 2 cut(s) 220, 336
BseJI GATNNNNATC 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 285
BseXI GCAGC 3 cut(s) 61, 331, 376
BshFI GGCC 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 117
BsmI GAATGC 2 cut(s) 238, 346
BsnI GGCC 1 cut(s) 117
Bsp143I GATC 3 cut(s) 59, 142, 349
Bsp19I CCATGG 1 cut(s) 118
BspANI GGCC 1 cut(s) 117
BspPI GGATC 1 cut(s) 344
BsrI ACTGG 1 cut(s) 390
BssECI CCNNGG 2 cut(s) 118, 375
BssMI GATC 3 cut(s) 59, 142, 349
BssT1I CCWWGG 2 cut(s) 118, 375
Bst4CI ACNGT 2 cut(s) 74, 299
BstDEI CTNAG 2 cut(s) 23, 80
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 2 cut(s) 220, 336
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 3 cut(s) 62, 145, 352
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 3 cut(s) 59, 142, 349
BstV1I GCAGC 3 cut(s) 61, 331, 376
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
Bsu36I CCTNAGG 1 cut(s) 80
BsuRI GGCC 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 2 cut(s) 220, 336
CfoI GCGC 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 211
CviAII CATG 2 cut(s) 119, 134
CviJI RGCY 6 cut(s) 39, 52, 78, 117, 357, 389
CviKI_1 RGCY 6 cut(s) 39, 52, 78, 117, 357, 389
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 2 cut(s) 23, 80
DpnI GATC 3 cut(s) 61, 144, 351
DpnII GATC 3 cut(s) 59, 142, 349
EaeI YGGCCR 1 cut(s) 115
Eco130I CCWWGG 2 cut(s) 118, 375
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 84
Eco47III AGCGCT 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 351
Eco81I CCTNAGG 1 cut(s) 80
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 2 cut(s) 118, 375
EcoT22I ATGCAT 1 cut(s) 135
ErhI CCWWGG 2 cut(s) 118, 375
FaeI CATG 2 cut(s) 122, 137
FaiI YATR 8 cut(s) 70, 109, 120, 135, 164, 195, 328, 399
FatI CATG 2 cut(s) 118, 133
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 3 cut(s) 50, 345, 390
FokI GGATG 2 cut(s) 207, 343
Fsp4HI GCNGC 3 cut(s) 50, 345, 390
FspBI CTAG 2 cut(s) 53, 335
GlaI GCGC 1 cut(s) 191
GluI GCNGC 3 cut(s) 50, 345, 390
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 1 cut(s) 117
HhaI GCGC 1 cut(s) 192
Hin1II CATG 2 cut(s) 122, 137
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 355
HinfI GANTC 1 cut(s) 371
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 2 cut(s) 370, 407
Hpy8I GTNNAC 1 cut(s) 295
HpyCH4III ACNGT 2 cut(s) 74, 299
HpyCH4V TGCA 2 cut(s) 33, 133
HpyF3I CTNAG 2 cut(s) 23, 80
Hsp92II CATG 2 cut(s) 122, 137
HspAI GCGC 1 cut(s) 190
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 3 cut(s) 59, 142, 349
LpnPI CCDG 1 cut(s) 371
Lsp1109I GCAGC 3 cut(s) 61, 331, 376
LweI GCATC 1 cut(s) 321
MaeI CTAG 2 cut(s) 53, 335
MalI GATC 3 cut(s) 61, 144, 351
MboI GATC 3 cut(s) 59, 142, 349
MboII GAAGA 4 cut(s) 16, 54, 113, 293
MflI RGATCY 1 cut(s) 59
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 3 cut(s) 13, 138, 240
MluNI TGGCCA 1 cut(s) 117
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 5 cut(s) 224, 262, 263, 295, 373
Mox20I TGGCCA 1 cut(s) 117
Mph1103I ATGCAT 1 cut(s) 135
MscI TGGCCA 1 cut(s) 117
MseI TTAA 1 cut(s) 239
Msp20I TGGCCA 1 cut(s) 117
Mva1269I GAATGC 2 cut(s) 238, 346
NcoI CCATGG 1 cut(s) 118
NdeII GATC 3 cut(s) 59, 142, 349
NlaIII CATG 2 cut(s) 122, 137
NsiI ATGCAT 1 cut(s) 135
PctI GAATGC 2 cut(s) 238, 346
PflMI CCANNNNNTGG 1 cut(s) 359
PkrI GCNGC 3 cut(s) 51, 346, 391
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PspPI GGNCC 1 cut(s) 84
PsuI RGATCY 1 cut(s) 59
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 3 cut(s) 50, 345, 390
Sau3AI GATC 3 cut(s) 59, 142, 349
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 1 cut(s) 380
SetI ASST 6 cut(s) 41, 54, 86, 216, 306, 359
SfaNI GCATC 1 cut(s) 321
SinI GGWCC 1 cut(s) 84
Sse9I AATT 3 cut(s) 13, 138, 240
SspMI CTAG 2 cut(s) 53, 335
StyI CCWWGG 2 cut(s) 118, 375
TaaI ACNGT 2 cut(s) 74, 299
TasI AATT 3 cut(s) 13, 138, 240
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TseI GCWGC 3 cut(s) 49, 344, 389
TspDTI ATGAA 3 cut(s) 17, 54, 150
Van91I CCANNNNNTGG 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 84
XspI CTAG 2 cut(s) 53, 335
Zsp2I ATGCAT 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.