MD05G1219800.v1.1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0015978
Physical Location & Seq
Forward (+)
35019487 .. 35019882
396 bp
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UTR
Exon/CDS
Intron
MD05G1219800.v1.1.491

Sequence Viewer

Length: 396 bp
ATGAAGAAGATGAATTTTCTGCTACGGAAGTGCAAGAGCTTGTCAAGACAGCTAGGGCGATCTTCATCATGCGGTAGCCTAAGGTCGAAATCTACGAGGGAGAATATATGTGTGCATGAAAGTCATGAACTTCATCATCGCCAAACTGTAATATTCGTGGGAAGCACGAGGAAGCGTTATGTGATTAGCTCAAAGTACCTCAACCATCCGTTGTTAGATGCCTTGATCGACAAGTCACCGAACCAAAATCGAGGACAGGAAGATGGCATCTTGGTAAACTGTGAGGTGGTTTTGTTTGATCACTTGTTGTGGATGCTAGAGAATAATGCAGAAGATCCCAGCTTTGGTAGCACTTCAGAGTCATTGGAAGAATTGGCTGCCCTCTATGTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

132

Amino Acids

14.98

Weight (kDa)

8.39

Isoelectric Point (pI)

55.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 19 - 106 9.4e-16 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12955
fragaria_vesca FvH4_3g15820
malus_domestica MD05G1219800.v1.1 MD10G1202100.v1.1
prunus_persica Prupe.4G140200_v2.0.a1
pyrus_communis pycom05g20110 pycom10g17290
rosa_chinensis RchiOBHm_Chr5g0026611
rosa_multiflora Rmu_sc0018952.1_g000005
rosa_rugosa Rorug05G0094200
rosa_samantha Rh5AG187600 Rh5BG184100 Rh5CG204100 Rh5DG186400
rosa_wichuraiana Rw5G016990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 72
AclWI GGATC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 344
AluBI AGCT 4 cut(s) 39, 52, 189, 342
AluI AGCT 4 cut(s) 39, 52, 189, 342
AlwI GGATC 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 228
AxyI CCTNAGG 1 cut(s) 80
BauI CACGAG 1 cut(s) 166
BbvI GCAGC 1 cut(s) 364
BccI CCATC 2 cut(s) 213, 257
BclI TGATCA 1 cut(s) 298
BfaI CTAG 2 cut(s) 53, 317
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
BmsI GCATC 3 cut(s) 208, 276, 303
BsaBI GATNNNNATC 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse21I CCTNAGG 1 cut(s) 80
Bse8I GATNNNNATC 1 cut(s) 64
BseGI GGATG 2 cut(s) 205, 318
BseJI GATNNNNATC 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 344
BseXI GCAGC 1 cut(s) 364
BseYI CCCAGC 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 344
Bsp143I GATC 4 cut(s) 59, 225, 298, 334
BspACI CCGC 1 cut(s) 72
BspHI TCATGA 1 cut(s) 124
BspPI GGATC 1 cut(s) 329
BssMI GATC 4 cut(s) 59, 225, 298, 334
BssSI CACGAG 1 cut(s) 166
Bst2BI CACGAG 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 148, 281
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 2 cut(s) 205, 318
BstKTI GATC 4 cut(s) 62, 228, 301, 337
BstMBI GATC 4 cut(s) 59, 225, 298, 334
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 364
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
Bsu36I CCTNAGG 1 cut(s) 80
BtgZI GCGATG 1 cut(s) 122
BtsCI GGATG 2 cut(s) 205, 318
CciI TCATGA 1 cut(s) 124
Csp6I GTAC 1 cut(s) 196
CviAII CATG 3 cut(s) 69, 116, 125
CviJI RGCY 6 cut(s) 39, 52, 78, 189, 342, 377
CviKI_1 RGCY 6 cut(s) 39, 52, 78, 189, 342, 377
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 1 cut(s) 80
DpnI GATC 4 cut(s) 61, 227, 300, 336
DpnII GATC 4 cut(s) 59, 225, 298, 334
Eco57I CTGAAG 1 cut(s) 339
Eco81I CCTNAGG 1 cut(s) 80
FaeI CATG 3 cut(s) 72, 119, 128
FaiI YATR 7 cut(s) 70, 107, 109, 117, 126, 180, 387
FatI CATG 3 cut(s) 68, 115, 124
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 2 cut(s) 192, 325
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 2 cut(s) 53, 317
GluI GCNGC 1 cut(s) 378
GsaI CCCAGC 1 cut(s) 342
Hin1II CATG 3 cut(s) 72, 119, 128
HinfI GANTC 1 cut(s) 359
HphI GGTGA 1 cut(s) 228
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 358, 395
Hpy188III TCNNGA 2 cut(s) 45, 125
Hpy8I GTNNAC 1 cut(s) 277
HpyCH4III ACNGT 2 cut(s) 148, 281
HpyCH4V TGCA 3 cut(s) 33, 115, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 3 cut(s) 72, 119, 128
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 4 cut(s) 59, 225, 298, 334
LpnPI CCDG 2 cut(s) 242, 352
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 3 cut(s) 208, 276, 303
MaeI CTAG 2 cut(s) 53, 317
MaeIII GTNAC 1 cut(s) 234
MalI GATC 4 cut(s) 61, 227, 300, 336
MboI GATC 4 cut(s) 59, 225, 298, 334
MboII GAAGA 6 cut(s) 16, 19, 54, 272, 344, 380
MflI RGATCY 1 cut(s) 334
MluCI AATT 2 cut(s) 13, 371
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 6 cut(s) 90, 162, 209, 245, 277, 392
MwoI GCNNNNNNNGC 1 cut(s) 348
NdeII GATC 4 cut(s) 59, 225, 298, 334
NlaIII CATG 3 cut(s) 72, 119, 128
NmuCI GTSAC 1 cut(s) 234
PagI TCATGA 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
PspFI CCCAGC 1 cut(s) 338
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 4 cut(s) 59, 225, 298, 334
SchI GAGTC 1 cut(s) 368
SetI ASST 7 cut(s) 41, 54, 86, 191, 201, 288, 344
SfaNI GCATC 3 cut(s) 208, 276, 303
Sse9I AATT 2 cut(s) 13, 371
SsiI CCGC 1 cut(s) 72
SspI AATATT 1 cut(s) 153
SspMI CTAG 2 cut(s) 53, 317
TaaI ACNGT 2 cut(s) 148, 281
TaqI TCGA 3 cut(s) 86, 228, 250
TasI AATT 2 cut(s) 13, 371
TseFI GTSAC 1 cut(s) 234
TseI GCWGC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 234
TspDTI ATGAA 6 cut(s) 17, 26, 54, 122, 132, 141
TspGWI ACGGA 2 cut(s) 40, 198
XapI RAATTY 1 cut(s) 13
XspI CTAG 2 cut(s) 53, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.