FvH4_3g15820

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015978
Physical Location & Seq
Reverse (-)
9952583 .. 9952996
414 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15820.t1

Sequence Viewer

Length: 414 bp
ATGAAGAAGATCAGTTTGCTATTAAGGAAGTGCAAGAGCTTGTCAAGCCAGCTAGGGAGATCTTCATCGTACAGCAGTCTGCGGTCCAAATCGACTAGAGAAGATTTCTATGATGGCAACATCGTGCATGAGAATCATCAGCAAATTACTATATTTGTTGGAAGCACCAGAAAGCGTTACGTGATCAGCTCCAAGTACCTGAACCATCCTTTGTTGAATGCTTTAATCGACAAGTCATCGAATTCGAAAAAGAAAAATAACTATCGAGGAGATGATCAAGATCATGAGGATATCTTGGTGAAATGCGAGGTGGTTCTCTTTGATCACTTGTTATGGATGCTGGAGAATGGAGATCCAAGCTTTGGTGGTACTTCAGAGTCTTTGGAGGAACTGGCTGCACTCTATGTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

138

Amino Acids

15.67

Weight (kDa)

8.51

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 28 - 114 4.6e-14 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12955
fragaria_vesca FvH4_3g15820
malus_domestica MD05G1219800.v1.1 MD10G1202100.v1.1
prunus_persica Prupe.4G140200_v2.0.a1
pyrus_communis pycom05g20110 pycom10g17290
rosa_chinensis RchiOBHm_Chr5g0026611
rosa_multiflora Rmu_sc0018952.1_g000005
rosa_rugosa Rorug05G0094200
rosa_samantha Rh5AG187600 Rh5BG184100 Rh5CG204100 Rh5DG186400
rosa_wichuraiana Rw5G016990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 362
AciI CCGC 1 cut(s) 82
AclWI GGATC 1 cut(s) 347
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 3 cut(s) 71, 197, 370
AfiI CCNNNNNNNGG 1 cut(s) 362
AgsI TTSAA 1 cut(s) 217
AluBI AGCT 4 cut(s) 39, 52, 189, 360
AluI AGCT 4 cut(s) 39, 52, 189, 360
AlwI GGATC 1 cut(s) 347
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 310
AsuII TTCGAA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 382
BccI CCATC 2 cut(s) 107, 213
BclI TGATCA 3 cut(s) 183, 274, 322
BfaI CTAG 2 cut(s) 53, 96
BglII AGATCT 1 cut(s) 59
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmsI GCATC 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 362
Bpu14I TTCGAA 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 181
BsaBI GATNNNNATC 2 cut(s) 64, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 396
Bse8I GATNNNNATC 2 cut(s) 64, 279
BseGI GGATG 2 cut(s) 205, 342
BseJI GATNNNNATC 2 cut(s) 64, 279
BseLI CCNNNNNNNGG 1 cut(s) 362
BseNI ACTGG 1 cut(s) 396
BseRI GAGGAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 382
BsgI GTGCAG 1 cut(s) 381
BslI CCNNNNNNNGG 1 cut(s) 362
BsmI GAATGC 1 cut(s) 223
Bsp119I TTCGAA 1 cut(s) 245
Bsp143I GATC 7 cut(s) 9, 59, 183, 274, 280, 322, 352
BspACI CCGC 1 cut(s) 82
BspHI TCATGA 1 cut(s) 283
BspPI GGATC 1 cut(s) 347
BspT104I TTCGAA 1 cut(s) 245
BsrI ACTGG 1 cut(s) 396
BssMI GATC 7 cut(s) 9, 59, 183, 274, 280, 322, 352
BstBAI YACGTR 1 cut(s) 181
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 50
BstF5I GGATG 2 cut(s) 205, 342
BstKTI GATC 7 cut(s) 12, 62, 186, 277, 283, 325, 355
BstMBI GATC 7 cut(s) 9, 59, 183, 274, 280, 322, 352
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 382
BstX2I RGATCY 2 cut(s) 59, 352
BstYI RGATCY 2 cut(s) 59, 352
BtsCI GGATG 2 cut(s) 205, 342
Cac8I GCNNGC 1 cut(s) 50
CciI TCATGA 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 84
Csp6I GTAC 3 cut(s) 70, 196, 369
CviAII CATG 2 cut(s) 128, 284
CviJI RGCY 6 cut(s) 39, 48, 52, 189, 360, 395
CviKI_1 RGCY 6 cut(s) 39, 48, 52, 189, 360, 395
CviQI GTAC 3 cut(s) 70, 196, 369
DpnI GATC 7 cut(s) 11, 61, 185, 276, 282, 324, 354
DpnII GATC 7 cut(s) 9, 59, 183, 274, 280, 322, 352
Eco32I GATATC 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 357
EcoRI GAATTC 1 cut(s) 241
EcoRV GATATC 1 cut(s) 292
FaeI CATG 2 cut(s) 131, 287
FaiI YATR 6 cut(s) 111, 129, 152, 285, 334, 405
FatI CATG 2 cut(s) 127, 283
FbaI TGATCA 3 cut(s) 183, 274, 322
Fnu4HI GCNGC 1 cut(s) 396
FokI GGATG 2 cut(s) 192, 349
Fsp4HI GCNGC 1 cut(s) 396
FspBI CTAG 2 cut(s) 53, 96
GluI GCNGC 1 cut(s) 396
GsuI CTGGAG 1 cut(s) 362
Hin1II CATG 2 cut(s) 131, 287
HindIII AAGCTT 1 cut(s) 358
HinfI GANTC 2 cut(s) 133, 377
HphI GGTGA 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 2 cut(s) 278, 284
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 3 cut(s) 33, 127, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 2 cut(s) 131, 287
Ksp22I TGATCA 3 cut(s) 183, 274, 322
Kzo9I GATC 7 cut(s) 9, 59, 183, 274, 280, 322, 352
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 5 cut(s) 62, 181, 212, 326, 377
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 1 cut(s) 327
MaeI CTAG 2 cut(s) 53, 96
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 176
MalI GATC 7 cut(s) 11, 61, 185, 276, 282, 324, 354
MboI GATC 7 cut(s) 9, 59, 183, 274, 280, 322, 352
MboII GAAGA 4 cut(s) 16, 19, 54, 113
MflI RGATCY 2 cut(s) 59, 352
MluCI AATT 2 cut(s) 144, 241
MlyI GAGTC 1 cut(s) 386
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 4 cut(s) 260, 280, 301, 379
MseI TTAA 2 cut(s) 23, 224
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 45
NdeII GATC 7 cut(s) 9, 59, 183, 274, 280, 322, 352
NlaIII CATG 2 cut(s) 131, 287
NspV TTCGAA 1 cut(s) 245
PagI TCATGA 1 cut(s) 283
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 133
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 1 cut(s) 397
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Ppu21I YACGTR 1 cut(s) 181
PspPI GGNCC 1 cut(s) 84
PsuI RGATCY 2 cut(s) 59, 352
RsaI GTAC 3 cut(s) 71, 197, 370
RsaNI GTAC 3 cut(s) 70, 196, 369
SaqAI TTAA 2 cut(s) 23, 224
SatI GCNGC 1 cut(s) 396
Sau3AI GATC 7 cut(s) 9, 59, 183, 274, 280, 322, 352
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 1 cut(s) 386
SetI ASST 7 cut(s) 41, 54, 183, 191, 201, 312, 362
SfaNI GCATC 1 cut(s) 327
SfuI TTCGAA 1 cut(s) 245
SinI GGWCC 1 cut(s) 84
Sse9I AATT 2 cut(s) 144, 241
SsiI CCGC 1 cut(s) 82
SspMI CTAG 2 cut(s) 53, 96
TaiI ACGT 1 cut(s) 183
TaqI TCGA 5 cut(s) 92, 228, 239, 245, 265
TasI AATT 2 cut(s) 144, 241
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 2 cut(s) 23, 224
Tru9I TTAA 2 cut(s) 23, 224
TseI GCWGC 1 cut(s) 395
TspDTI ATGAA 2 cut(s) 17, 54
Van91I CCANNNNNTGG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 1 cut(s) 241
XspI CTAG 2 cut(s) 53, 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.