Rh5DG186400

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0015978
Physical Location & Seq
Reverse (-)
20729433 .. 20731030
1598 bp
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UTR
Exon/CDS
Intron
Rh5DG186400.1

Sequence Viewer

Length: 408 bp
ATGAAGAAGATCAGTTTGCTATTAAGGAAGTGCAAGAGCTTGTCAAGCCAGCTAGGGAGATCTTCATCGTATAACAGTCTACGATCCAAATCGACTAGAGAAGATTTGTATGATGGCAACATCATAAATGAGAATCATCAGCAAACTACTATATTTGTTGGAAGCACCAGAAAGCGTTACGTGATCAGCTCCAAGTACCTGAAGCATCCTGTGTTGAATGCTTTGATCGAGAAGTCATCGAATAAGCGAAATAACAATCGAGGAGATGATCATGATCATGAGGATATCTTGGTGAAGTGTGAGGTGGTTCTCTTTGATCACTTGTTATGGATGCTGGAAAATGGAGATCCAAGCTTTGGTGGTACTTCAGAGTCTTTGGAGGAACTGGCTGCACTCTATGAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

135

Amino Acids

15.46

Weight (kDa)

7.8

Isoelectric Point (pI)

56.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 45 - 112 7.5e-14 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12955
fragaria_vesca FvH4_3g15820
malus_domestica MD05G1219800.v1.1 MD10G1202100.v1.1
prunus_persica Prupe.4G140200_v2.0.a1
pyrus_communis pycom05g20110 pycom10g17290
rosa_chinensis RchiOBHm_Chr5g0026611
rosa_multiflora Rmu_sc0018952.1_g000005
rosa_rugosa Rorug05G0094200
rosa_samantha Rh5AG187600 Rh5BG184100 Rh5CG204100 Rh5DG186400
rosa_wichuraiana Rw5G016990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 356
AccI GTMKAC 1 cut(s) 79
AclWI GGATC 2 cut(s) 78, 341
AcuI CTGAAG 2 cut(s) 221, 351
AfaI GTAC 2 cut(s) 197, 364
AfiI CCNNNNNNNGG 1 cut(s) 356
AgsI TTSAA 1 cut(s) 217
AluBI AGCT 4 cut(s) 39, 52, 189, 354
AluI AGCT 4 cut(s) 39, 52, 189, 354
AlwI GGATC 2 cut(s) 78, 341
ApeKI GCWGC 1 cut(s) 389
AsuHPI GGTGA 1 cut(s) 304
BbvI GCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 107
BclI TGATCA 4 cut(s) 183, 268, 274, 316
BfaI CTAG 2 cut(s) 53, 96
BglII AGATCT 1 cut(s) 59
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
BmsI GCATC 2 cut(s) 214, 321
BsaAI YACGTR 1 cut(s) 181
BsaBI GATNNNNATC 3 cut(s) 64, 88, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 390
Bse8I GATNNNNATC 3 cut(s) 64, 88, 273
BseGI GGATG 2 cut(s) 205, 336
BseJI GATNNNNATC 3 cut(s) 64, 88, 273
BseLI CCNNNNNNNGG 1 cut(s) 356
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 376
BsgI GTGCAG 1 cut(s) 375
BslI CCNNNNNNNGG 1 cut(s) 356
BsmI GAATGC 1 cut(s) 223
Bsp143I GATC 9 cut(s) 9, 59, 83, 183, 225, 268, 274, 316, 346
BspHI TCATGA 2 cut(s) 271, 277
BspPI GGATC 2 cut(s) 78, 341
BsrI ACTGG 1 cut(s) 390
BssMI GATC 9 cut(s) 9, 59, 83, 183, 225, 268, 274, 316, 346
Bst4CI ACNGT 1 cut(s) 77
BstBAI YACGTR 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 50
BstF5I GGATG 2 cut(s) 205, 336
BstKTI GATC 9 cut(s) 12, 62, 86, 186, 228, 271, 277, 319, 349
BstMBI GATC 9 cut(s) 9, 59, 83, 183, 225, 268, 274, 316, 346
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 376
BstX2I RGATCY 2 cut(s) 59, 346
BstYI RGATCY 2 cut(s) 59, 346
BtsCI GGATG 2 cut(s) 205, 336
Cac8I GCNNGC 1 cut(s) 50
CciI TCATGA 2 cut(s) 271, 277
Csp6I GTAC 2 cut(s) 196, 363
CviAII CATG 2 cut(s) 272, 278
CviJI RGCY 6 cut(s) 39, 48, 52, 189, 354, 389
CviKI_1 RGCY 6 cut(s) 39, 48, 52, 189, 354, 389
CviQI GTAC 2 cut(s) 196, 363
DpnI GATC 9 cut(s) 11, 61, 85, 185, 227, 270, 276, 318, 348
DpnII GATC 9 cut(s) 9, 59, 83, 183, 225, 268, 274, 316, 346
Eco32I GATATC 1 cut(s) 286
Eco57I CTGAAG 2 cut(s) 221, 351
EcoRV GATATC 1 cut(s) 286
FaeI CATG 2 cut(s) 275, 281
FaiI YATR 8 cut(s) 72, 111, 125, 152, 273, 279, 328, 399
FatI CATG 2 cut(s) 271, 277
FbaI TGATCA 4 cut(s) 183, 268, 274, 316
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 2 cut(s) 192, 343
Fsp4HI GCNGC 1 cut(s) 390
FspBI CTAG 2 cut(s) 53, 96
GluI GCNGC 1 cut(s) 390
Hin1II CATG 2 cut(s) 275, 281
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 2 cut(s) 133, 371
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 370
Hpy188III TCNNGA 3 cut(s) 229, 272, 278
Hpy8I GTNNAC 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 33, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 2 cut(s) 275, 281
Ksp22I TGATCA 4 cut(s) 183, 268, 274, 316
Kzo9I GATC 9 cut(s) 9, 59, 83, 183, 225, 268, 274, 316, 346
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 6 cut(s) 62, 181, 212, 222, 320, 371
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 2 cut(s) 214, 321
MaeI CTAG 2 cut(s) 53, 96
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 176
MalI GATC 9 cut(s) 11, 61, 85, 185, 227, 270, 276, 318, 348
MboI GATC 9 cut(s) 9, 59, 83, 183, 225, 268, 274, 316, 346
MboII GAAGA 4 cut(s) 16, 19, 54, 113
MflI RGATCY 2 cut(s) 59, 346
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 4 cut(s) 254, 274, 295, 373
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 45
NdeII GATC 9 cut(s) 9, 59, 83, 183, 225, 268, 274, 316, 346
NlaIII CATG 2 cut(s) 275, 281
PagI TCATGA 2 cut(s) 271, 277
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 133
PflMI CCANNNNNTGG 1 cut(s) 356
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Ppu21I YACGTR 1 cut(s) 181
PsuI RGATCY 2 cut(s) 59, 346
RsaI GTAC 2 cut(s) 197, 364
RsaNI GTAC 2 cut(s) 196, 363
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 9 cut(s) 9, 59, 83, 183, 225, 268, 274, 316, 346
SchI GAGTC 1 cut(s) 380
SetI ASST 7 cut(s) 41, 54, 183, 191, 201, 306, 356
SfaNI GCATC 2 cut(s) 214, 321
SmiMI CAYNNNNRTG 1 cut(s) 276
SspMI CTAG 2 cut(s) 53, 96
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 1 cut(s) 183
TaqI TCGA 4 cut(s) 92, 228, 239, 259
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TseI GCWGC 1 cut(s) 389
TspDTI ATGAA 2 cut(s) 17, 54
Van91I CCANNNNNTGG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 79
XspI CTAG 2 cut(s) 53, 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.