Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009341

Physical Location & Seq

Genomic Coordinates Forward (+)

4269943 .. 4271375

Gene Structure 1433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCAGAGTCTACTCAGATGGAAGTTGAGACAGCAACAGAAGGAACTGTGCCATTGCCGCCTAAACCAACCTTCAAGCCTTTGAAAGCTCATGAAATGTCTGATGGTAAAGTCCAGTTCAGGAAAATAGCTGTACCACCAAACCGATACTCGCCTCTCAAGAAAGCATGGTTGGATATCTACACACCCATTTACGATCAGATGAAGGTTGACATAAGGATGAATCTCAAAGCCCGCAAAGTCGAGCTTAAAACCCGAGCTGACACTCCCGACATCAGTAATCTTCAGAAGTCTGCGGATTTTGTACACGCTTTCATGCTTGGTTTTGATATCCCTGATGCTATCTCTCTTTTGAGAATGGACGAGCTTTATGTTGAGTCTTTTGAGATCAAGGATGTGAAGACTCTTAAAGGTGAGCATTTGTCTAGAGCCATTGGTAGGTTGTCTGGTAAAGGAGGGAAGACAAAGTTTGCTATTGAGAACTCGACCAAGACGAGGATTGTGATTGCAGACACTAGGATTCATATTTTGGGAGCTTTCTCTAATATTAAAGTCGCAAGGAGTTCACTTTGCAGTCTTATTATGGGATCTCCTGCTGGGAAAGTTTACTCTAAGCTCAGATCTGTCTCTGCTAGATTGAACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

215

Amino Acids

24.01

Weight (kDa)

9.71

Isoelectric Point (pI)

27.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_PNO1_2nd	PF22891	127 - 210	2.1e-35	Eukaryotic type KH-domain (KH-domain type I)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13230 AT3G13230
fragaria_vesca	FvH4_5g31610 FvH4_5g31610
malus_domestica	MD03G1039400.v1.1 MD11G1039900.v1.1
prunus_persica	Prupe.6G031600_v2.0.a1 Prupe.6G032300_v2.0.a1 Prupe.6G032300_v2.0.a1
pyrus_communis	pycom11g03420
rosa_chinensis	RchiOBHm_Chr7g0227141
rosa_laevigata	RLG00000001665
rosa_multiflora	Rmu_sc0003153.1_g000020 Rmu_sc0029286.1_g000002
rosa_roxburghii	Rroxscaffold_3G00232280
rosa_rugosa	Rorug07G0241000
rosa_samantha	Rh7AG390800 Rh7BG375800 Rh7CG409800 Rh7DG388100
rosa_wichuraiana	Rw0G014510 Rw7G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	3 cut(s)	59, 235, 296
AclWI	GGATC	1 cut(s)	595
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	2 cut(s)	135, 306
AfiI	CCNNNNNNNGG	2 cut(s)	438, 495
AgsI	TTSAA	3 cut(s)	76, 85, 640
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	7 cut(s)	89, 131, 247, 260, 367, 536, 616
AluI	AGCT	7 cut(s)	89, 131, 247, 260, 367, 536, 616
Alw26I	GTCTC	2 cut(s)	23, 631
AlwI	GGATC	1 cut(s)	595
Ama87I	CYCGRG	1 cut(s)	255
AsuHPI	GGTGA	1 cut(s)	425
AvaI	CYCGRG	1 cut(s)	255
BbsI	GAAGAC	2 cut(s)	407, 467
BccI	CCATC	2 cut(s)	13, 98
BcoDI	GTCTC	2 cut(s)	23, 631
BfaI	CTAG	3 cut(s)	426, 516, 633
BglII	AGATCT	1 cut(s)	620
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	328
BpiI	GAAGAC	2 cut(s)	407, 467
BpuEI	CTTGAG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	2 cut(s)	438, 495
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	53
BseGI	GGATG	2 cut(s)	225, 400
BseLI	CCNNNNNNNGG	2 cut(s)	438, 495
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	29, 631
BseNI	ACTGG	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	596
BsiHKCI	CYCGRG	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	438, 495
BsmAI	GTCTC	2 cut(s)	23, 631
BsoBI	CYCGRG	1 cut(s)	255
Bsp1407I	TGTACA	1 cut(s)	304
Bsp143I	GATC	4 cut(s)	196, 387, 587, 620
BspACI	CCGC	3 cut(s)	59, 235, 296
BspCNI	CTCAG	2 cut(s)	28, 630
BspHI	TCATGA	1 cut(s)	91
BspPI	GGATC	1 cut(s)	595
BsrDI	GCAATG	1 cut(s)	53
BsrGI	TGTACA	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	115
BssMI	GATC	4 cut(s)	196, 387, 587, 620
Bst4CI	ACNGT	1 cut(s)	49
BstAUI	TGTACA	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	3 cut(s)	15, 612, 617
BstF5I	GGATG	2 cut(s)	225, 400
BstKTI	GATC	4 cut(s)	199, 390, 590, 623
BstMAI	GTCTC	2 cut(s)	23, 631
BstMBI	GATC	4 cut(s)	196, 387, 587, 620
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstV2I	GAAGAC	2 cut(s)	407, 467
BstX2I	RGATCY	2 cut(s)	587, 620
BstYI	RGATCY	2 cut(s)	587, 620
BtsCI	GGATG	2 cut(s)	225, 400
Cac8I	GCNNGC	1 cut(s)	235
CciI	TCATGA	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	134, 305
CviAII	CATG	3 cut(s)	92, 168, 316
CviQI	GTAC	2 cut(s)	134, 305
DdeI	CTNAG	3 cut(s)	15, 612, 617
DpnI	GATC	4 cut(s)	198, 389, 589, 622
DpnII	GATC	4 cut(s)	196, 387, 587, 620
Eco32I	GATATC	2 cut(s)	178, 331
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	255
EcoRV	GATATC	2 cut(s)	178, 331
FaeI	CATG	3 cut(s)	95, 171, 319
FaiI	YATR	7 cut(s)	93, 169, 215, 317, 372, 525, 584
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FatI	CATG	3 cut(s)	91, 167, 315
FauI	CCCGC	1 cut(s)	242
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	2 cut(s)	232, 407
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	3 cut(s)	426, 516, 633
GluI	GCNGC	1 cut(s)	59
GsaI	CCCAGC	1 cut(s)	600
Hin1II	CATG	3 cut(s)	95, 171, 319
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	5 cut(s)	8, 223, 377, 403, 520
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	5 cut(s)	12, 211, 307, 566, 607
Hpy188I	TCNGA	5 cut(s)	18, 103, 201, 288, 620
Hpy188III	TCNNGA	5 cut(s)	92, 121, 160, 269, 426
Hpy8I	GTNNAC	5 cut(s)	12, 211, 307, 566, 607
HpyAV	CCTTC	3 cut(s)	35, 82, 199
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	509, 573
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	3 cut(s)	15, 612, 617
Hsp92II	CATG	3 cut(s)	95, 171, 319
Kzo9I	GATC	4 cut(s)	196, 387, 587, 620
LmnI	GCTCC	1 cut(s)	533
LpnPI	CCDG	6 cut(s)	106, 128, 348, 432, 582, 606
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	3 cut(s)	426, 516, 633
MalI	GATC	4 cut(s)	198, 389, 589, 622
MboI	GATC	4 cut(s)	196, 387, 587, 620
MboII	GAAGA	3 cut(s)	275, 412, 472
MflI	RGATCY	2 cut(s)	587, 620
MlyI	GAGTC	3 cut(s)	17, 386, 397
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	3 cut(s)	165, 449, 489
MseI	TTAA	3 cut(s)	249, 408, 549
MslI	CAYNNNNRTG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	4 cut(s)	196, 387, 587, 620
NlaIII	CATG	3 cut(s)	95, 171, 319
PagI	TCATGA	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	223, 520
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	3 cut(s)	16, 385, 397
PpsI	GAGTC	3 cut(s)	16, 385, 397
PspFI	CCCAGC	1 cut(s)	596
PsuI	RGATCY	2 cut(s)	587, 620
RsaI	GTAC	2 cut(s)	135, 306
RsaNI	GTAC	2 cut(s)	134, 305
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	249, 408, 549
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	4 cut(s)	196, 387, 587, 620
SchI	GAGTC	3 cut(s)	17, 386, 397
SfaNI	GCATC	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SsiI	CCGC	3 cut(s)	59, 235, 296
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	3 cut(s)	426, 516, 633
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	243, 485
TatI	WGTACW	1 cut(s)	304
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	2 cut(s)	223, 520
Tru1I	TTAA	3 cut(s)	249, 408, 549
Tru9I	TTAA	3 cut(s)	249, 408, 549
TspDTI	ATGAA	5 cut(s)	108, 218, 236, 304, 512
XbaI	TCTAGA	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	3 cut(s)	426, 516, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.