Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009341

Physical Location & Seq

Genomic Coordinates Forward (+)

2448936 .. 2451247

Gene Structure 2312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G031600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCAGTCCAATGAAGCTCCCGTTTCCATGGAAGTCGAAGCAGTTCCATCTGAACCAAGTTCAGCATCTGCGGCTTTGCCACCAAAACCAATTTTTGAGCCTTTGAAGGCTCATGAGATGTCAGATGGTCGAGTCCAGTTTCGGAAAGTCTCTGTTCCGCCACATCGATATTCACCTCTCAAGAAAGTATGGTTGGACATTTACACCCCAGTTTATGAGCAGATGAAGATAGACATTCGTATGAATCTCAAGGGTCGCAAAGTTGAGTTAAAGACTAGAGCTGACACACCCGACGTGAGTAATTTACAAAAGTGTTCTGATTTTGTTCAGGCTTTCATGCTGGGGTTTGATGTGATAGATGCCATTGCCCTTTTGCGTATGGATGAGCTGTATGTGGAGTCTTTTGAGATCAAGGATGTTAAAACACTTCGTGGGGAGCACTTGTCTCGTGCTATAGGAAGACTGTCCGGTAAAGGTGGTAAAACAAAGTTTGCCATCGAGAATGCTACAAAGACGAGGATTGTGATTGCTGATACCAAGATTCACATACTGGGCTCTTTTGCAAATATTAAAGTTGCAAGGGATTCTCTTTGCAGCCTTATCTTAGGGTCCCCTGCTGGAAAAGTATATTCAAAATTAAGAGCAGTTACTGCCAGATTGGCAGAAAGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

225

Amino Acids

24.94

Weight (kDa)

9.54

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13230 AT3G13230
fragaria_vesca	FvH4_5g31610 FvH4_5g31610
malus_domestica	MD03G1039400.v1.1 MD11G1039900.v1.1
prunus_persica	Prupe.6G031600_v2.0.a1 Prupe.6G032300_v2.0.a1 Prupe.6G032300_v2.0.a1
pyrus_communis	pycom11g03420
rosa_chinensis	RchiOBHm_Chr7g0227141
rosa_laevigata	RLG00000001665
rosa_multiflora	Rmu_sc0003153.1_g000020 Rmu_sc0029286.1_g000002
rosa_roxburghii	Rroxscaffold_3G00232280
rosa_rugosa	Rorug07G0241000
rosa_samantha	Rh7AG390800 Rh7BG375800 Rh7CG409800 Rh7DG388100
rosa_wichuraiana	Rw0G014510 Rw7G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	71, 158
AdeI	CACNNNGTG	1 cut(s)	431
AgsI	TTSAA	2 cut(s)	106, 633
AjiI	CACGTC	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	3 cut(s)	17, 281, 388
AluI	AGCT	3 cut(s)	17, 281, 388
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	2 cut(s)	154, 450
AlwNI	CAGNNNCTG	2 cut(s)	68, 650
ApeKI	GCWGC	1 cut(s)	594
Asp700I	GAANNNNTTC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	609
AsuHPI	GGTGA	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	609
BanII	GRGCYC	1 cut(s)	557
BauI	CACGAG	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	606
BccI	CCATC	3 cut(s)	55, 119, 503
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BcoDI	GTCTC	2 cut(s)	154, 450
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	453
BglI	GCCNNNNNGGC	1 cut(s)	659
BisI	GCNGC	2 cut(s)	72, 595
BlsI	GCNGC	2 cut(s)	73, 596
Bme18I	GGWCC	1 cut(s)	609
BmgBI	CACGTC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	609
BmiI	GGNNCC	2 cut(s)	610, 611
BmrI	ACTGGG	2 cut(s)	203, 560
BmsI	GCATC	2 cut(s)	74, 349
BmuI	ACTGGG	2 cut(s)	203, 560
BpiI	GAAGAC	1 cut(s)	466
BpuEI	CTTGAG	2 cut(s)	164, 233
Bsa29I	ATCGAT	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	467
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bse1I	ACTGG	3 cut(s)	136, 209, 555
Bse3DI	GCAATG	1 cut(s)	363
BseCI	ATCGAT	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	388, 421
BseMI	GCAATG	1 cut(s)	363
BseNI	ACTGG	3 cut(s)	136, 209, 555
BseXI	GCAGC	1 cut(s)	606
BseYI	CCCAGC	1 cut(s)	340
BshVI	ATCGAT	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	1 cut(s)	595
BsmAI	GTCTC	2 cut(s)	154, 450
BsmFI	GGGAC	1 cut(s)	595
BsmI	GAATGC	1 cut(s)	508
Bsp1286I	GDGCHC	2 cut(s)	441, 557
Bsp143I	GATC	1 cut(s)	408
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	2 cut(s)	71, 158
BspDI	ATCGAT	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	610, 611
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	3 cut(s)	136, 209, 555
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	408
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	465
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstDEI	CTNAG	1 cut(s)	604
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	388, 421
BstKTI	GATC	1 cut(s)	411
BstMAI	GTCTC	2 cut(s)	154, 450
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 650, 659
BstSFI	CTRYAG	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	606
BstV2I	GAAGAC	1 cut(s)	466
Bsu15I	ATCGAT	1 cut(s)	166
BsuTUI	ATCGAT	1 cut(s)	166
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	388, 421
CaiI	CAGNNNCTG	2 cut(s)	68, 650
CciI	TCATGA	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	609
ClaI	ATCGAT	1 cut(s)	166
CviAII	CATG	3 cut(s)	28, 113, 337
CviJI	RGCY	9 cut(s)	17, 74, 100, 110, 281, 332, 388, 555, 597
CviKI_1	RGCY	9 cut(s)	17, 74, 100, 110, 281, 332, 388, 555, 597
DdeI	CTNAG	1 cut(s)	604
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
DraIII	CACNNNGTG	1 cut(s)	431
EciI	GGCGGA	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	609
EcoO109I	RGGNCCY	1 cut(s)	609
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	557
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	3 cut(s)	31, 116, 340
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	3 cut(s)	27, 112, 336
Fnu4HI	GCNGC	2 cut(s)	72, 595
FokI	GGATG	2 cut(s)	395, 428
FriOI	GRGCYC	1 cut(s)	557
Fsp4HI	GCNGC	2 cut(s)	72, 595
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	2 cut(s)	72, 595
GsaI	CCCAGC	1 cut(s)	344
HapII	CCGG	1 cut(s)	468
Hin1II	CATG	3 cut(s)	31, 116, 340
HinfI	GANTC	5 cut(s)	132, 244, 398, 541, 584
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	1 cut(s)	165
Hpy188I	TCNGA	4 cut(s)	52, 124, 144, 319
Hpy188III	TCNNGA	3 cut(s)	113, 181, 499
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	4 cut(s)	4, 563, 578, 594
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 650, 659
HpyF3I	CTNAG	1 cut(s)	604
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	31, 116, 340
KflI	GGGWCCC	1 cut(s)	609
Kzo9I	GATC	1 cut(s)	408
LmnI	GCTCC	2 cut(s)	22, 436
LpnPI	CCDG	9 cut(s)	149, 222, 314, 326, 481, 536, 603, 627, 667
Lsp1109I	GCAGC	1 cut(s)	606
LweI	GCATC	2 cut(s)	74, 349
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	646
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	2 cut(s)	238, 471
MhlI	GDGCHC	2 cut(s)	441, 557
MluCI	AATT	3 cut(s)	90, 301, 635
MlyI	GAGTC	2 cut(s)	141, 407
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	2 cut(s)	186, 510
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	4 cut(s)	269, 420, 570, 638
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	1 cut(s)	468
Mva1269I	GAATGC	1 cut(s)	508
MwoI	GCNNNNNNNGC	3 cut(s)	71, 650, 659
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	1 cut(s)	408
NlaIII	CATG	3 cut(s)	31, 116, 340
NlaIV	GGNNCC	2 cut(s)	610, 611
PagI	TCATGA	1 cut(s)	112
PctI	GAATGC	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	244, 541, 584
PkrI	GCNGC	2 cut(s)	73, 596
PleI	GAGTC	2 cut(s)	140, 406
PpsI	GAGTC	2 cut(s)	140, 406
PpuMI	RGGWCCY	1 cut(s)	609
Psp5II	RGGWCCY	1 cut(s)	609
PspFI	CCCAGC	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	610, 611
PspPI	GGNCC	1 cut(s)	609
PspPPI	RGGWCCY	1 cut(s)	609
PstNI	CAGNNNCTG	2 cut(s)	68, 650
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	4 cut(s)	269, 420, 570, 638
SatI	GCNGC	2 cut(s)	72, 595
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	1 cut(s)	609
SchI	GAGTC	2 cut(s)	141, 407
SduI	GDGCHC	2 cut(s)	441, 557
SetI	ASST	7 cut(s)	19, 178, 283, 297, 390, 478, 671
SfaNI	GCATC	2 cut(s)	74, 349
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	2 cut(s)	179, 248
SmoI	CTYRAG	2 cut(s)	179, 248
Sse9I	AATT	3 cut(s)	90, 301, 635
SsiI	CCGC	2 cut(s)	71, 158
SspI	AATATT	1 cut(s)	568
SspMI	CTAG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	465
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	4 cut(s)	36, 130, 166, 498
TasI	AATT	3 cut(s)	90, 301, 635
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	3 cut(s)	244, 541, 584
Tru1I	TTAA	4 cut(s)	269, 420, 570, 638
Tru9I	TTAA	4 cut(s)	269, 420, 570, 638
TseI	GCWGC	1 cut(s)	594
TspDTI	ATGAA	4 cut(s)	27, 239, 257, 325
VpaK11BI	GGWCC	1 cut(s)	609
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.