Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009341

Physical Location & Seq

Genomic Coordinates Forward (+)

22771129 .. 22772975

Gene Structure 1847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31610.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCAGTCCAATGAAGCTCCTAGTTCCATGGAAGTCAAAGCAGTTGCAAATGGAGCCGGTTCAGCTTCGGGGACATTGCCGCCAAAGCCAAGTTTTGAGCCTTTAAAGGCTCATGAGATGTCAGATGGGCAAGTTCAGTTCAGGAAGGTCTCTGTTCCACCGCATCGCTATACGCCACTCAAGAAAGCATGGATGCAAATATATACCCCAATTTACGAGCAGATGAAGATAGACATCCGTATGAATCTGAAAGGCCGCAAAGTGGAGTTGAAGACCAGACGTGACACACCTGACATTAGTCACTTGCAGAAGTGTGCTGACTTTGTTCAGGCTTTCATGCTGGGTTTTGATATCATAGACGCCATTGCCCTTCTGCGTTTGGACGAGCTTTATGTGGAATCCTTTGAGATCAAGGACGTCAAAACACTCCGAGGTGAGCACTTGTCTCGTGCTATAGGAAGGCTGTCTGGGAAAGGAGGTAGAACAAAATTCGCGATTGAGAATGCTACAAAGACTAGGATTGTGATTGCAGACACCAAGATCCACATATTGGGATCTTTTGCAAACATAAAGGTTGCTAGGGATTCGCTTTGCAACCTCATCTTAGGATCCCCTGCTGCGAAAGTTTATTCAAAACTAAGAGCAGTTACTGCTAGATTGGCAGAACGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

225

Amino Acids

24.97

Weight (kDa)

9.83

Isoelectric Point (pI)

29.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_PNO1_2nd	PF22891	144 - 227	1.4e-35	Eukaryotic type KH-domain (KH-domain type I)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13230 AT3G13230
fragaria_vesca	FvH4_5g31610 FvH4_5g31610
malus_domestica	MD03G1039400.v1.1 MD11G1039900.v1.1
prunus_persica	Prupe.6G031600_v2.0.a1 Prupe.6G032300_v2.0.a1 Prupe.6G032300_v2.0.a1
pyrus_communis	pycom11g03420
rosa_chinensis	RchiOBHm_Chr7g0227141
rosa_laevigata	RLG00000001665
rosa_multiflora	Rmu_sc0003153.1_g000020 Rmu_sc0029286.1_g000002
rosa_roxburghii	Rroxscaffold_3G00232280
rosa_rugosa	Rorug07G0241000
rosa_samantha	Rh7AG390800 Rh7BG375800 Rh7CG409800 Rh7DG388100
rosa_wichuraiana	Rw0G014510 Rw7G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	420
AccB7I	CCANNNNNTGG	1 cut(s)	550
AccII	CGCG	1 cut(s)	494
AciI	CCGC	3 cut(s)	80, 161, 256
AclWI	GGATC	4 cut(s)	535, 562, 603, 616
AcsI	RAATTY	1 cut(s)	488
AcyI	GRCGYC	2 cut(s)	360, 417
AfiI	CCNNNNNNNGG	2 cut(s)	262, 550
AgsI	TTSAA	2 cut(s)	271, 633
AjiI	CACGTC	1 cut(s)	281
AluBI	AGCT	3 cut(s)	17, 65, 388
AluI	AGCT	3 cut(s)	17, 65, 388
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	2 cut(s)	154, 450
AlwI	GGATC	4 cut(s)	535, 562, 603, 616
AlwNI	CAGNNNCTG	1 cut(s)	650
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	617
ApoI	RAATTY	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	446
BamHI	GGATCC	1 cut(s)	608
BauI	CACGAG	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	604
BccI	CCATC	1 cut(s)	119
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BcoDI	GTCTC	2 cut(s)	154, 450
BfaI	CTAG	4 cut(s)	21, 516, 579, 654
BfmI	CTRYAG	1 cut(s)	453
BisI	GCNGC	3 cut(s)	80, 256, 618
BlsI	GCNGC	3 cut(s)	81, 257, 619
BmgBI	CACGTC	1 cut(s)	281
BmiI	GGNNCC	2 cut(s)	55, 610
BmsI	GCATC	2 cut(s)	172, 183
BoxI	GACNNNNGTC	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	233
BsaHI	GRCGYC	2 cut(s)	360, 417
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	27, 430
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 550
Bse118I	RCCGGY	1 cut(s)	56
Bse3DI	GCAATG	2 cut(s)	74, 363
Bse8I	GATNNNNATC	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	27, 430
BseGI	GGATG	2 cut(s)	198, 234
BseJI	GATNNNNATC	1 cut(s)	233
BseLI	CCNNNNNNNGG	2 cut(s)	262, 550
BseMI	GCAATG	2 cut(s)	74, 363
BseXI	GCAGC	1 cut(s)	604
BseYI	CCCAGC	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	262, 550
BsmAI	GTCTC	2 cut(s)	154, 450
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp143I	GATC	4 cut(s)	408, 540, 554, 608
Bsp19I	CCATGG	1 cut(s)	27
Bsp68I	TCGCGA	1 cut(s)	494
BspACI	CCGC	3 cut(s)	80, 161, 256
BspANI	GGCC	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	494
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	55, 610
BspPI	GGATC	4 cut(s)	535, 562, 603, 616
BspTNI	GGTCTC	1 cut(s)	154
BsrDI	GCAATG	2 cut(s)	74, 363
BsrFI	RCCGGY	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	27, 430
BssMI	GATC	4 cut(s)	408, 540, 554, 608
BssNI	GRCGYC	2 cut(s)	360, 417
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	669
BstACI	GRCGYC	2 cut(s)	360, 417
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstDEI	CTNAG	2 cut(s)	604, 638
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	198, 234
BstFNI	CGCG	1 cut(s)	494
BstKTI	GATC	4 cut(s)	411, 543, 557, 611
BstMAI	GTCTC	2 cut(s)	154, 450
BstMBI	GATC	4 cut(s)	408, 540, 554, 608
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 62, 85, 650, 659
BstPAI	GACNNNNGTC	1 cut(s)	297
BstSFI	CTRYAG	1 cut(s)	453
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	604
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	3 cut(s)	540, 554, 608
BstYI	RGATCY	3 cut(s)	540, 554, 608
BsuRI	GGCC	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	149
BtrI	CACGTC	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	198, 234
BtuMI	TCGCGA	1 cut(s)	494
CaiI	CAGNNNCTG	1 cut(s)	650
CciI	TCATGA	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	56
CseI	GACGC	1 cut(s)	368
CviAII	CATG	4 cut(s)	28, 113, 189, 337
DdeI	CTNAG	2 cut(s)	604, 638
DpnI	GATC	4 cut(s)	410, 542, 556, 610
DpnII	GATC	4 cut(s)	408, 540, 554, 608
DraI	TTTAAA	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	154
Eco32I	GATATC	1 cut(s)	352
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	4 cut(s)	31, 116, 192, 340
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	4 cut(s)	27, 112, 188, 336
Fnu4HI	GCNGC	3 cut(s)	80, 256, 618
FokI	GGATG	2 cut(s)	205, 221
Fsp4HI	GCNGC	3 cut(s)	80, 256, 618
FspBI	CTAG	4 cut(s)	21, 516, 579, 654
GluI	GCNGC	3 cut(s)	80, 256, 618
GsaI	CCCAGC	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	57
HgaI	GACGC	1 cut(s)	368
Hin1I	GRCGYC	2 cut(s)	360, 417
Hin1II	CATG	4 cut(s)	31, 116, 192, 340
HinfI	GANTC	3 cut(s)	244, 398, 584
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	446
Hpy188I	TCNGA	3 cut(s)	124, 249, 431
Hpy188III	TCNNGA	4 cut(s)	113, 142, 181, 493
HpyAV	CCTTC	3 cut(s)	139, 380, 453
HpyCH4III	ACNGT	1 cut(s)	669
HpyCH4IV	ACGT	2 cut(s)	280, 417
HpyCH4V	TGCA	7 cut(s)	4, 47, 196, 307, 530, 563, 594
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 62, 85, 650, 659
HpyF3I	CTNAG	2 cut(s)	604, 638
HpySE526I	ACGT	2 cut(s)	280, 417
Hsp92I	GRCGYC	2 cut(s)	360, 417
Hsp92II	CATG	4 cut(s)	31, 116, 192, 340
Kzo9I	GATC	4 cut(s)	408, 540, 554, 608
LmnI	GCTCC	2 cut(s)	22, 53
LpnPI	CCDG	8 cut(s)	70, 127, 289, 303, 314, 326, 453, 627
Lsp1109I	GCAGC	1 cut(s)	604
LweI	GCATC	2 cut(s)	172, 183
MaeI	CTAG	4 cut(s)	21, 516, 579, 654
MaeII	ACGT	2 cut(s)	280, 417
MaeIII	GTNAC	3 cut(s)	281, 299, 646
MalI	GATC	4 cut(s)	410, 542, 556, 610
MboI	GATC	4 cut(s)	408, 540, 554, 608
MboII	GAAGA	2 cut(s)	238, 283
MflI	RGATCY	3 cut(s)	540, 554, 608
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	2 cut(s)	210, 488
MnlI	CCTC	3 cut(s)	425, 470, 608
MseI	TTAA	1 cut(s)	104
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	508
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	5 cut(s)	53, 62, 85, 650, 659
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	4 cut(s)	408, 540, 554, 608
NlaIII	CATG	4 cut(s)	31, 116, 192, 340
NlaIV	GGNNCC	2 cut(s)	55, 610
NmuCI	GTSAC	2 cut(s)	281, 299
NruI	TCGCGA	1 cut(s)	494
PagI	TCATGA	1 cut(s)	112
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	3 cut(s)	244, 398, 584
PflMI	CCANNNNNTGG	1 cut(s)	550
PkrI	GCNGC	3 cut(s)	81, 257, 619
PshAI	GACNNNNGTC	1 cut(s)	297
PspFI	CCCAGC	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	55, 610
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	3 cut(s)	540, 554, 608
RruI	TCGCGA	1 cut(s)	494
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	3 cut(s)	80, 256, 618
Sau3AI	GATC	4 cut(s)	408, 540, 554, 608
SduI	GDGCHC	1 cut(s)	441
SfaNI	GCATC	2 cut(s)	172, 183
SfcI	CTRYAG	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	210, 488
SsiI	CCGC	3 cut(s)	80, 161, 256
SspMI	CTAG	4 cut(s)	21, 516, 579, 654
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	669
TaiI	ACGT	2 cut(s)	283, 420
TasI	AATT	2 cut(s)	210, 488
TauI	GCSGC	2 cut(s)	82, 258
TfiI	GAWTC	3 cut(s)	244, 398, 584
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TseFI	GTSAC	2 cut(s)	281, 299
TseI	GCWGC	1 cut(s)	617
Tsp45I	GTSAC	2 cut(s)	281, 299
TspDTI	ATGAA	4 cut(s)	27, 239, 257, 325
TspGWI	ACGGA	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	550
XapI	RAATTY	1 cut(s)	488
XspI	CTAG	4 cut(s)	21, 516, 579, 654
ZraI	GACGTC	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.