Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009341

Physical Location & Seq

Genomic Coordinates Reverse (-)

17961904 .. 17962577

Gene Structure 674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCAGTCCAATGAAGCTCCTACTTCCATGGAAGTCGAAGCAGTGGCAAATGGAGCCAGTTCAGCATCTGGGGCACTGCCTGCAAAGCCAAGTTTTGAGCCTTTAAAGGCTCATGAGATGTCAGATGGGCAAGTTCAGTTCCGGAAGGTCTCTGTTCCACCGCATCGTTATACGCCACTGAAGAAAGCATGGATGGAAATATACACCCCAATTTACGAGCAGATGAAGATAGACATTCGTATGAATCTCAAGGGCCGCAAAGTGGAGTTGAAGACCAGACGTGACACACCTGACATTAGTCATCTGCAGAAGTGTGCTGATTTTGTCCAGGCTTTCATGCTTGGGTTTGATGTCATAGATGCCATTGCCCTTCTACGAAGGCTGTCTGGGAAAGGTGGCAGAACAAAATTCGCGATTGAGAATGCTACAAAGACTAGGATTGTGATTGCAGACACCAAGATCCACATTTTGGGATCTTTTGCAAACATAAAGGTTGCTAGGGACTCTCTTTGCAACCTTATCTTAGGATCCCCTGCTGCTAAAGTGTATTCAAAACTAAGAGCGGTTACTGCCAGATTGGCAGAAAGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

197

Amino Acids

21.84

Weight (kDa)

9.89

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_PNO1_2nd	PF22891	127 - 190	1.3e-26	Eukaryotic type KH-domain (KH-domain type I)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13230 AT3G13230
fragaria_vesca	FvH4_5g31610 FvH4_5g31610
malus_domestica	MD03G1039400.v1.1 MD11G1039900.v1.1
prunus_persica	Prupe.6G031600_v2.0.a1 Prupe.6G032300_v2.0.a1 Prupe.6G032300_v2.0.a1
pyrus_communis	pycom11g03420
rosa_chinensis	RchiOBHm_Chr7g0227141
rosa_laevigata	RLG00000001665
rosa_multiflora	Rmu_sc0003153.1_g000020 Rmu_sc0029286.1_g000002
rosa_roxburghii	Rroxscaffold_3G00232280
rosa_rugosa	Rorug07G0241000
rosa_samantha	Rh7AG390800 Rh7BG375800 Rh7CG409800 Rh7DG388100
rosa_wichuraiana	Rw0G014510 Rw7G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	469
AccBSI	CCGCTC	1 cut(s)	563
AccII	CGCG	1 cut(s)	413
AccIII	TCCGGA	1 cut(s)	141
AciI	CCGC	3 cut(s)	161, 256, 563
AclWI	GGATC	4 cut(s)	454, 481, 522, 535
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	200
AfiI	CCNNNNNNNGG	2 cut(s)	262, 469
AgsI	TTSAA	2 cut(s)	271, 552
AjiI	CACGTC	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	4 cut(s)	454, 481, 522, 535
AlwNI	CAGNNNCTG	1 cut(s)	68
Aor13HI	TCCGGA	1 cut(s)	141
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	253
BaeGI	GKGCMC	1 cut(s)	76
BamHI	GGATCC	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	523
BccI	CCATC	2 cut(s)	119, 187
BciT130I	CCWGG	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	2 cut(s)	435, 498
BfmI	CTRYAG	1 cut(s)	305
BglI	GCCNNNNNGGC	1 cut(s)	578
BisI	GCNGC	2 cut(s)	256, 537
BlsI	GCNGC	2 cut(s)	257, 538
Bme1390I	CCNGG	1 cut(s)	329
BmgBI	CACGTC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	2 cut(s)	55, 529
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	3 cut(s)	74, 172, 349
BoxI	GACNNNNGTC	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 469
Bse1I	ACTGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	262, 469
BseMI	GCAATG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	523
Bsh1236I	CGCG	1 cut(s)	413
BshFI	GGCC	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	2 cut(s)	262, 469
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	515
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp13I	TCCGGA	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	459, 473, 527
Bsp19I	CCATGG	1 cut(s)	27
Bsp68I	TCGCGA	1 cut(s)	413
BspACI	CCGC	3 cut(s)	161, 256, 563
BspANI	GGCC	1 cut(s)	255
BspEI	TCCGGA	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	413
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	55, 529
BspMAI	CTGCAG	1 cut(s)	309
BspPI	GGATC	4 cut(s)	454, 481, 522, 535
BspTNI	GGTCTC	1 cut(s)	154
BsrBI	CCGCTC	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	3 cut(s)	459, 473, 527
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	523, 557
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	198
BstFNI	CGCG	1 cut(s)	413
BstKTI	GATC	3 cut(s)	462, 476, 530
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	3 cut(s)	459, 473, 527
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 62, 71, 80, 85, 569, 578
BstNI	CCWGG	1 cut(s)	329
BstPAI	GACNNNNGTC	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	1 cut(s)	305
BstSLI	GKGCMC	1 cut(s)	76
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	1 cut(s)	523
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	3 cut(s)	459, 473, 527
BstYI	RGATCY	3 cut(s)	459, 473, 527
BsuRI	GGCC	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	198
BtsI	GCAGTG	2 cut(s)	48, 74
BtsIMutI	CAGTG	3 cut(s)	48, 74, 176
BtuMI	TCGCGA	1 cut(s)	413
Cac8I	GCNNGC	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	68
CciI	TCATGA	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	253
CviAII	CATG	4 cut(s)	28, 113, 189, 337
CviJI	RGCY	8 cut(s)	17, 56, 88, 100, 110, 255, 332, 382
CviKI_1	RGCY	8 cut(s)	17, 56, 88, 100, 110, 255, 332, 382
DdeI	CTNAG	2 cut(s)	523, 557
DpnI	GATC	3 cut(s)	461, 475, 529
DpnII	GATC	3 cut(s)	459, 473, 527
DraI	TTTAAA	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	4 cut(s)	31, 116, 192, 340
FaiI	YATR	9 cut(s)	29, 114, 171, 190, 202, 242, 338, 356, 488
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	4 cut(s)	27, 112, 188, 336
Fnu4HI	GCNGC	2 cut(s)	256, 537
FokI	GGATG	1 cut(s)	205
Fsp4HI	GCNGC	2 cut(s)	256, 537
FspBI	CTAG	2 cut(s)	435, 498
GluI	GCNGC	2 cut(s)	256, 537
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	142
Hin1II	CATG	4 cut(s)	31, 116, 192, 340
HinfI	GANTC	2 cut(s)	244, 503
HpaII	CCGG	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	3 cut(s)	113, 142, 412
HpyAV	CCTTC	3 cut(s)	139, 372, 380
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	6 cut(s)	4, 83, 307, 449, 482, 513
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 62, 71, 80, 85, 569, 578
HpyF3I	CTNAG	2 cut(s)	523, 557
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	4 cut(s)	31, 116, 192, 340
Kpn2I	TCCGGA	1 cut(s)	141
Kzo9I	GATC	3 cut(s)	459, 473, 527
LmnI	GCTCC	2 cut(s)	22, 53
Lsp1109I	GCAGC	1 cut(s)	523
LweI	GCATC	3 cut(s)	74, 172, 349
MaeI	CTAG	2 cut(s)	435, 498
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	2 cut(s)	281, 565
MalI	GATC	3 cut(s)	461, 475, 529
MbiI	CCGCTC	1 cut(s)	563
MboI	GATC	3 cut(s)	459, 473, 527
MboII	GAAGA	3 cut(s)	193, 238, 283
MflI	RGATCY	3 cut(s)	459, 473, 527
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	2 cut(s)	210, 407
MlyI	GAGTC	1 cut(s)	497
MroI	TCCGGA	1 cut(s)	141
MseI	TTAA	1 cut(s)	104
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	1 cut(s)	329
Mva1269I	GAATGC	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	7 cut(s)	53, 62, 71, 80, 85, 569, 578
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	3 cut(s)	459, 473, 527
NlaIII	CATG	4 cut(s)	31, 116, 192, 340
NlaIV	GGNNCC	2 cut(s)	55, 529
NmuCI	GTSAC	1 cut(s)	281
NruI	TCGCGA	1 cut(s)	413
PagI	TCATGA	1 cut(s)	112
PctI	GAATGC	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	244
PflMI	CCANNNNNTGG	1 cut(s)	469
PkrI	GCNGC	2 cut(s)	257, 538
PleI	GAGTC	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	497
PshAI	GACNNNNGTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	55, 529
PspPI	GGNCC	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	309
PstNI	CAGNNNCTG	1 cut(s)	68
PsuI	RGATCY	3 cut(s)	459, 473, 527
RruI	TCGCGA	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	2 cut(s)	256, 537
Sau3AI	GATC	3 cut(s)	459, 473, 527
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	497
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	8 cut(s)	19, 150, 283, 292, 397, 495, 519, 590
SfaNI	GCATC	3 cut(s)	74, 172, 349
SfcI	CTRYAG	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	210, 407
SsiI	CCGC	3 cut(s)	161, 256, 563
SspMI	CTAG	2 cut(s)	435, 498
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	27
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	210, 407
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	3 cut(s)	48, 81, 183
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	4 cut(s)	27, 239, 257, 325
TspRI	CASTG	3 cut(s)	48, 81, 183
Van91I	CCANNNNNTGG	1 cut(s)	469
XapI	RAATTY	1 cut(s)	407
XspI	CTAG	2 cut(s)	435, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.