Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009341

Physical Location & Seq

Genomic Coordinates Reverse (-)

3445414 .. 3447088

Gene Structure 1675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1039900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCAGTCCAACGGAGCTCTTACAGCCATGGAAGTTGAAGCAGGTCCATCTGCACCAAATTCAGCGGCTGTGACTTTACCACCCAAGCCATTGTTTGCGCCTTTGAAGGCTCATGAGATGTCAGATGGACAAGTCCAGTTCCGGAAAGTCTCTGTCCCGCCACATCGTTATTCGCCCCTCAAGAAAGCTTGGATGGACATATACACACCAATTTATGAGCAGATGAAGATAGACATTCGTATGAATCTCAAGGGTCGCAAAGTTGAGTTGAAGACTAGAGCCGACACACCCGAAGTAAGTAATCTACAGAAGTGCGCTGATTTTGTTCAGGCTTTCATGCTGGGCTTTGATGTTATAGATGCCATTGCCCTTTTGCGAATGGATGAGCTCTATGTAGAGTCGTTTGAGATCAAGGACGTTAAAACCCTTCGTGGGGAGCACTTGTCTCGTGCTATAGGAAGACTGTCCGGTAAGGGCGGTAAAACAAAGTTTGCAATCGAGAATGCTACAAAGACGAGGATTGTGATTGCTGACACCAAGATTCACATACTGGGTTCGTTTGCAAATATTAAAGTTGCAAGGGATTCTCTTTGCAGCCTTATCTTAGGGTCCCCTGCCGGAAAAGTGTATTCGAAATTAAGAGCAGTTACTGCCAGATTGGCCGAAAGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

225

Amino Acids

24.76

Weight (kDa)

9.69

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_PNO1_2nd	PF22891	134 - 217	3.9e-36	Eukaryotic type KH-domain (KH-domain type I)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13230 AT3G13230
fragaria_vesca	FvH4_5g31610 FvH4_5g31610
malus_domestica	MD03G1039400.v1.1 MD11G1039900.v1.1
prunus_persica	Prupe.6G031600_v2.0.a1 Prupe.6G032300_v2.0.a1 Prupe.6G032300_v2.0.a1
pyrus_communis	pycom11g03420
rosa_chinensis	RchiOBHm_Chr7g0227141
rosa_laevigata	RLG00000001665
rosa_multiflora	Rmu_sc0003153.1_g000020 Rmu_sc0029286.1_g000002
rosa_roxburghii	Rroxscaffold_3G00232280
rosa_rugosa	Rorug07G0241000
rosa_samantha	Rh7AG390800 Rh7BG375800 Rh7CG409800 Rh7DG388100
rosa_wichuraiana	Rw0G014510 Rw7G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	141
AciI	CCGC	3 cut(s)	65, 158, 477
AcoI	YGGCCR	1 cut(s)	660
AcsI	RAATTY	1 cut(s)	58
AfiI	CCNNNNNNNGG	2 cut(s)	432, 433
AgsI	TTSAA	3 cut(s)	38, 106, 271
AluBI	AGCT	3 cut(s)	17, 188, 388
AluI	AGCT	3 cut(s)	17, 188, 388
Alw21I	GWGCWC	3 cut(s)	19, 390, 441
Alw26I	GTCTC	2 cut(s)	154, 450
AlwNI	CAGNNNCTG	2 cut(s)	68, 650
Aor13HI	TCCGGA	1 cut(s)	141
AoxI	GGCC	1 cut(s)	660
ApeKI	GCWGC	1 cut(s)	594
ApoI	RAATTY	1 cut(s)	58
AspLEI	GCGC	2 cut(s)	100, 317
AspS9I	GGNCC	2 cut(s)	44, 609
AsuII	TTCGAA	1 cut(s)	632
AvaII	GGWCC	2 cut(s)	44, 609
BanII	GRGCYC	2 cut(s)	19, 390
BauI	CACGAG	1 cut(s)	447
BbsI	GAAGAC	2 cut(s)	278, 466
Bbv12I	GWGCWC	3 cut(s)	19, 390, 441
BbvI	GCAGC	1 cut(s)	606
BccI	CCATC	3 cut(s)	55, 119, 187
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BcoDI	GTCTC	2 cut(s)	154, 450
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	2 cut(s)	305, 453
BfuAI	ACCTGC	1 cut(s)	32
BglI	GCCNNNNNGGC	1 cut(s)	659
BisI	GCNGC	2 cut(s)	66, 595
BlsI	GCNGC	2 cut(s)	67, 596
Bme18I	GGWCC	2 cut(s)	44, 609
BmgT120I	GGNCC	2 cut(s)	44, 609
BmiI	GGNNCC	2 cut(s)	610, 611
BmrI	ACTGGG	1 cut(s)	560
BmsI	GCATC	1 cut(s)	349
BmuI	ACTGGG	1 cut(s)	560
BpiI	GAAGAC	2 cut(s)	278, 466
Bpu14I	TTCGAA	1 cut(s)	632
BpuEI	CTTGAG	2 cut(s)	164, 233
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	2 cut(s)	141, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 433
Bse1I	ACTGG	2 cut(s)	136, 555
Bse3DI	GCAATG	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	198, 388
BseLI	CCNNNNNNNGG	2 cut(s)	432, 433
BseMI	GCAATG	1 cut(s)	363
BseNI	ACTGG	2 cut(s)	136, 555
BseXI	GCAGC	1 cut(s)	606
BseYI	CCCAGC	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	662
BsiHKAI	GWGCWC	3 cut(s)	19, 390, 441
BsiSI	CCGG	3 cut(s)	142, 468, 618
BslFI	GGGAC	2 cut(s)	140, 595
BslI	CCNNNNNNNGG	2 cut(s)	432, 433
BsmAI	GTCTC	2 cut(s)	154, 450
BsmFI	GGGAC	2 cut(s)	140, 595
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	1 cut(s)	662
Bsp119I	TTCGAA	1 cut(s)	632
Bsp1286I	GDGCHC	3 cut(s)	19, 390, 441
Bsp13I	TCCGGA	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	408
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	3 cut(s)	65, 158, 477
BspANI	GGCC	1 cut(s)	662
BspEI	TCCGGA	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	610, 611
BspMI	ACCTGC	1 cut(s)	32
BspT104I	TTCGAA	1 cut(s)	632
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	136, 555
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	408
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	465
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstBI	TTCGAA	1 cut(s)	632
BstDEI	CTNAG	1 cut(s)	604
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	198, 388
BstHHI	GCGC	2 cut(s)	100, 317
BstKTI	GATC	1 cut(s)	411
BstMAI	GTCTC	2 cut(s)	154, 450
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 650, 659
BstSFI	CTRYAG	2 cut(s)	305, 453
BstV1I	GCAGC	1 cut(s)	606
BstV2I	GAAGAC	2 cut(s)	278, 466
BsuRI	GGCC	1 cut(s)	662
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	198, 388
BveI	ACCTGC	1 cut(s)	32
CaiI	CAGNNNCTG	2 cut(s)	68, 650
CciI	TCATGA	1 cut(s)	112
CfoI	GCGC	2 cut(s)	100, 317
Cfr13I	GGNCC	2 cut(s)	44, 609
CviAII	CATG	3 cut(s)	28, 113, 337
DdeI	CTNAG	1 cut(s)	604
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
EaeI	YGGCCR	1 cut(s)	660
Ecl136II	GAGCTC	2 cut(s)	17, 388
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	2 cut(s)	19, 390
Eco47I	GGWCC	2 cut(s)	44, 609
Eco53kI	GAGCTC	2 cut(s)	17, 388
EcoICRI	GAGCTC	2 cut(s)	17, 388
EcoO109I	RGGNCCY	1 cut(s)	609
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	2 cut(s)	19, 390
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	3 cut(s)	31, 116, 340
FaqI	GGGAC	2 cut(s)	140, 595
FatI	CATG	3 cut(s)	27, 112, 336
FauI	CCCGC	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	66, 595
FokI	GGATG	2 cut(s)	205, 395
FriOI	GRGCYC	2 cut(s)	19, 390
Fsp4HI	GCNGC	2 cut(s)	66, 595
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	2 cut(s)	99, 316
GluI	GCNGC	2 cut(s)	66, 595
GsaI	CCCAGC	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	662
HapII	CCGG	3 cut(s)	142, 468, 618
HhaI	GCGC	2 cut(s)	100, 317
Hin1II	CATG	3 cut(s)	31, 116, 340
Hin6I	GCGC	2 cut(s)	98, 315
HinP1I	GCGC	2 cut(s)	98, 315
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	4 cut(s)	244, 398, 541, 584
HpaII	CCGG	3 cut(s)	142, 468, 618
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	4 cut(s)	113, 142, 181, 499
HpyAV	CCTTC	2 cut(s)	100, 437
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	6 cut(s)	4, 53, 494, 563, 578, 594
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 650, 659
HpyF3I	CTNAG	1 cut(s)	604
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	3 cut(s)	31, 116, 340
HspAI	GCGC	2 cut(s)	98, 315
KflI	GGGWCCC	1 cut(s)	609
Kpn2I	TCCGGA	1 cut(s)	141
Kzo9I	GATC	1 cut(s)	408
LmnI	GCTCC	2 cut(s)	14, 436
Lsp1109I	GCAGC	1 cut(s)	606
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	2 cut(s)	70, 646
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	3 cut(s)	238, 283, 471
MhlI	GDGCHC	3 cut(s)	19, 390, 441
MluCI	AATT	3 cut(s)	58, 210, 635
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	2 cut(s)	188, 510
MroI	TCCGGA	1 cut(s)	141
MseI	TTAA	3 cut(s)	420, 570, 638
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	3 cut(s)	142, 468, 618
Mva1269I	GAATGC	1 cut(s)	508
MwoI	GCNNNNNNNGC	3 cut(s)	23, 650, 659
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	1 cut(s)	408
NlaIII	CATG	3 cut(s)	31, 116, 340
NlaIV	GGNNCC	2 cut(s)	610, 611
NmuCI	GTSAC	1 cut(s)	70
NspV	TTCGAA	1 cut(s)	632
PagI	TCATGA	1 cut(s)	112
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	3 cut(s)	244, 541, 584
PkrI	GCNGC	2 cut(s)	67, 596
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PpuMI	RGGWCCY	1 cut(s)	609
Psp124BI	GAGCTC	2 cut(s)	19, 390
Psp5II	RGGWCCY	1 cut(s)	609
PspFI	CCCAGC	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	610, 611
PspPI	GGNCC	2 cut(s)	44, 609
PspPPI	RGGWCCY	1 cut(s)	609
PstNI	CAGNNNCTG	2 cut(s)	68, 650
RseI	CAYNNNNRTG	1 cut(s)	239
SacI	GAGCTC	2 cut(s)	19, 390
SaqAI	TTAA	3 cut(s)	420, 570, 638
SatI	GCNGC	2 cut(s)	66, 595
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	2 cut(s)	44, 609
SchI	GAGTC	1 cut(s)	407
SduI	GDGCHC	3 cut(s)	19, 390, 441
SetI	ASST	6 cut(s)	19, 46, 190, 390, 420, 671
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	2 cut(s)	305, 453
SfuI	TTCGAA	1 cut(s)	632
SinI	GGWCC	2 cut(s)	44, 609
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	2 cut(s)	179, 248
SmoI	CTYRAG	2 cut(s)	179, 248
Sse9I	AATT	3 cut(s)	58, 210, 635
SsiI	CCGC	3 cut(s)	65, 158, 477
SspI	AATATT	1 cut(s)	568
SspMI	CTAG	1 cut(s)	276
SstI	GAGCTC	2 cut(s)	19, 390
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	465
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	2 cut(s)	498, 632
TasI	AATT	3 cut(s)	58, 210, 635
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	3 cut(s)	244, 541, 584
Tru1I	TTAA	3 cut(s)	420, 570, 638
Tru9I	TTAA	3 cut(s)	420, 570, 638
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	594
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	3 cut(s)	239, 257, 325
TspGWI	ACGGA	1 cut(s)	27
VpaK11BI	GGWCC	2 cut(s)	44, 609
XapI	RAATTY	1 cut(s)	58
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.