AT3G13275

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017556
Physical Location & Seq
Reverse (-)
4289086 .. 4289860
775 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13275.1

Sequence Viewer

Length: 210 bp
ATGTGTTGTGGACGGATTTGCATGCTGTGCACGTGTTTGCTTCTTGTGGTGATCGCGATTGGGTTTCTATTTGGATTCGGTGTCTTCAAGGATGGATTTCACAAGATCCATGAATCAATTCATCTCGAATGCGATCCCAGATTTGGTTGCGGCGGTGGCCTTGGACGTCGCGGTTATGGTTTCCCAGCTCCGGCCGGTGGTTTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.38

Weight (kDa)

8.23

Isoelectric Point (pI)

57.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13275
malus_domestica MD03G1039700.v1.1 MD11G1040400.v1.1
prunus_persica Prupe.6G032000_v2.0.a1
pyrus_communis pycom03g03060 pycom11g03490
rosa_chinensis RchiOBHm_Chr5g0075191
rosa_roxburghii Rroxscaffold_1G00006410 Rroxscaffold_1G00044420
rosa_rugosa Rorug05G0437300
rosa_wichuraiana Rw5G022900 Rw5G045860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 169
AccII CGCG 2 cut(s) 56, 171
AciI CCGC 3 cut(s) 150, 153, 171
AclWI GGATC 2 cut(s) 100, 128
AcoI YGGCCR 1 cut(s) 192
AcvI CACGTG 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 166
AfiI CCNNNNNNNGG 3 cut(s) 143, 190, 197
AflIII ACRYGT 1 cut(s) 32
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Alw21I GWGCWC 1 cut(s) 32
Alw44I GTGCAC 1 cut(s) 28
AlwI GGATC 2 cut(s) 100, 128
AoxI GGCC 2 cut(s) 157, 192
ApaLI GTGCAC 1 cut(s) 28
Asp700I GAANNNNTTC 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 32
BbrPI CACGTG 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 32
BccI CCATC 1 cut(s) 86
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 76
BsaAI YACGTR 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 190, 197
Bse118I RCCGGY 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 3 cut(s) 143, 190, 197
BseSI GKGCMC 1 cut(s) 32
BseX3I CGGCCG 1 cut(s) 192
BseYI CCCAGC 1 cut(s) 184
Bsh1236I CGCG 2 cut(s) 56, 171
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 2 cut(s) 159, 194
BsiEI CGRYCG 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 2 cut(s) 191, 195
BslI CCNNNNNNNGG 3 cut(s) 143, 190, 197
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 2 cut(s) 159, 194
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 3 cut(s) 51, 105, 133
Bsp68I TCGCGA 1 cut(s) 56
BspACI CCGC 3 cut(s) 150, 153, 171
BspANI GGCC 2 cut(s) 159, 194
BspFNI CGCG 2 cut(s) 56, 171
BspPI GGATC 2 cut(s) 100, 128
BsrFI RCCGGY 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 3 cut(s) 51, 105, 133
BssNI GRCGYC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 160
BstACI GRCGYC 1 cut(s) 166
BstAPI GCANNNNNTGC 1 cut(s) 27
BstBAI YACGTR 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 23
BstF5I GGATG 1 cut(s) 97
BstFNI CGCG 2 cut(s) 56, 171
BstKTI GATC 3 cut(s) 54, 108, 136
BstMBI GATC 3 cut(s) 51, 105, 133
BstMCI CGRYCG 1 cut(s) 195
BstMWI GCNNNNNNNGC 2 cut(s) 27, 156
BstNSI RCATGY 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 32
BstUI CGCG 2 cut(s) 56, 171
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BstZI CGGCCG 1 cut(s) 192
BsuRI GGCC 2 cut(s) 159, 194
BtsCI GGATG 1 cut(s) 97
BtuMI TCGCGA 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 23
Cfr10I RCCGGY 1 cut(s) 194
CviAII CATG 2 cut(s) 22, 110
CviJI RGCY 3 cut(s) 159, 188, 194
CviKI_1 RGCY 3 cut(s) 159, 188, 194
DpnI GATC 3 cut(s) 53, 107, 135
DpnII GATC 3 cut(s) 51, 105, 133
EaeI YGGCCR 1 cut(s) 192
EagI CGGCCG 1 cut(s) 192
EclXI CGGCCG 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 160
Eco52I CGGCCG 1 cut(s) 192
Eco72I CACGTG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 2 cut(s) 25, 113
FaiI YATR 3 cut(s) 23, 111, 177
FatI CATG 2 cut(s) 21, 109
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 151
GsaI CCCAGC 1 cut(s) 188
HaeIII GGCC 2 cut(s) 159, 194
HapII CCGG 2 cut(s) 191, 195
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 2 cut(s) 25, 113
HinfI GANTC 2 cut(s) 75, 113
HpaII CCGG 2 cut(s) 191, 195
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 2 cut(s) 11, 30
Hpy188III TCNNGA 2 cut(s) 55, 125
Hpy8I GTNNAC 2 cut(s) 11, 30
Hpy99I CGWCG 1 cut(s) 171
HpyCH4IV ACGT 2 cut(s) 32, 166
HpyCH4V TGCA 2 cut(s) 21, 30
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 156
HpySE526I ACGT 2 cut(s) 32, 166
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 2 cut(s) 25, 113
Kzo9I GATC 3 cut(s) 51, 105, 133
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 3 cut(s) 151, 198, 204
MaeII ACGT 2 cut(s) 32, 166
MalI GATC 3 cut(s) 53, 107, 135
MboI GATC 3 cut(s) 51, 105, 133
MboII GAAGA 1 cut(s) 76
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 2 cut(s) 117, 205
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 1 cut(s) 204
MspI CCGG 2 cut(s) 191, 195
Mva1269I GAATGC 1 cut(s) 134
MvnI CGCG 2 cut(s) 56, 171
MwoI GCNNNNNNNGC 2 cut(s) 27, 156
NdeII GATC 3 cut(s) 51, 105, 133
NlaIII CATG 2 cut(s) 25, 113
NruI TCGCGA 1 cut(s) 56
NspI RCATGY 1 cut(s) 25
PaeI GCATGC 1 cut(s) 25
PctI GAATGC 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 2 cut(s) 75, 113
PkrI GCNGC 1 cut(s) 152
PmaCI CACGTG 1 cut(s) 33
PmlI CACGTG 1 cut(s) 33
Ppu21I YACGTR 1 cut(s) 33
PspCI CACGTG 1 cut(s) 33
PspFI CCCAGC 1 cut(s) 184
PsuI RGATCY 1 cut(s) 105
RruI TCGCGA 1 cut(s) 56
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 3 cut(s) 51, 105, 133
SduI GDGCHC 1 cut(s) 32
SetI ASST 3 cut(s) 35, 169, 190
SphI GCATGC 1 cut(s) 25
Sse9I AATT 2 cut(s) 117, 205
SsiI CCGC 3 cut(s) 150, 153, 171
StyI CCWWGG 1 cut(s) 160
TaiI ACGT 2 cut(s) 35, 169
TaqI TCGA 1 cut(s) 126
TasI AATT 2 cut(s) 117, 205
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 2 cut(s) 75, 113
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TspDTI ATGAA 2 cut(s) 110, 126
TspGWI ACGGA 1 cut(s) 28
VneI GTGCAC 1 cut(s) 28
XceI RCATGY 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 117
ZraI GACGTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.