Prupe.6G032000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017556
Physical Location & Seq
Reverse (-)
2465132 .. 2466309
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G032000.1

Sequence Viewer

Length: 330 bp
ATGACTGTCGACAAAAGAATTGGGCTGCAGAACCCAGATAAAAACCCATCTCCCAAATCCCAAGATCTCAAACAGCGAACCCTTTTTCTGGGTCTGAAATTCCAGGGAAAAAGAGATTCGAAGCACTCAAAGGGAAGCAAAGATGTGCTGCTGTCCAAGCAGAGTTTGCATGCTGTGCACTTGTTTGATACTGGTGGTGGTTTTGTGTTCAAGAATGGCTTCCACAAGATCAAAGATACTGTGAATTTCTGTGATCCGAATGTTCATGGATCTTATTGTGGGTCTACTGGAAGACCCTTCTTGGGTTACACTGCACCTGCACCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.04

Weight (kDa)

9.85

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13275
malus_domestica MD03G1039700.v1.1 MD11G1040400.v1.1
prunus_persica Prupe.6G032000_v2.0.a1
pyrus_communis pycom03g03060 pycom11g03490
rosa_chinensis RchiOBHm_Chr5g0075191
rosa_roxburghii Rroxscaffold_1G00006410 Rroxscaffold_1G00044420
rosa_rugosa Rorug05G0437300
rosa_wichuraiana Rw5G022900 Rw5G045860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 325
Acc36I ACCTGC 1 cut(s) 325
AccI GTMKAC 2 cut(s) 9, 284
AclWI GGATC 2 cut(s) 248, 277
AcsI RAATTY 2 cut(s) 98, 244
AfiI CCNNNNNNNGG 2 cut(s) 88, 302
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 1 cut(s) 102
Alw21I GWGCWC 1 cut(s) 180
Alw44I GTGCAC 1 cut(s) 176
AlwI GGATC 2 cut(s) 248, 277
ApaLI GTGCAC 1 cut(s) 176
ApeKI GCWGC 2 cut(s) 25, 148
ApoI RAATTY 2 cut(s) 98, 244
Asp700I GAANNNNTTC 1 cut(s) 218
AsuII TTCGAA 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 12, 135
BccI CCATC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 104
BfaI CTAG 1 cut(s) 328
BfmI CTRYAG 1 cut(s) 26
BfuAI ACCTGC 1 cut(s) 325
BglII AGATCT 1 cut(s) 64
BisI GCNGC 2 cut(s) 26, 149
BlsI GCNGC 2 cut(s) 27, 150
Bme1390I CCNGG 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 298
Bpu14I TTCGAA 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 302
Bse1I ACTGG 2 cut(s) 196, 292
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 103
BseLI CCNNNNNNNGG 2 cut(s) 88, 302
BseNI ACTGG 2 cut(s) 196, 292
BseSI GKGCMC 1 cut(s) 180
BseXI GCAGC 2 cut(s) 12, 135
BsgI GTGCAG 2 cut(s) 297, 303
BsiHKAI GWGCWC 1 cut(s) 180
BslI CCNNNNNNNGG 2 cut(s) 88, 302
Bsp119I TTCGAA 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 4 cut(s) 64, 228, 253, 269
BspMAI CTGCAG 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 325
BspPI GGATC 2 cut(s) 248, 277
BspT104I TTCGAA 1 cut(s) 119
BsrI ACTGG 2 cut(s) 196, 292
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 4 cut(s) 64, 228, 253, 269
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 7, 241
BstAPI GCANNNNNTGC 2 cut(s) 166, 175
BstBI TTCGAA 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 171
BstKTI GATC 4 cut(s) 67, 231, 256, 272
BstMBI GATC 4 cut(s) 64, 228, 253, 269
BstMWI GCNNNNNNNGC 3 cut(s) 157, 166, 175
BstNI CCWGG 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 26
BstSLI GKGCMC 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 12, 135
BstV2I GAAGAC 1 cut(s) 298
BstX2I RGATCY 2 cut(s) 64, 269
BstYI RGATCY 2 cut(s) 64, 269
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 309
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 171
CviAII CATG 2 cut(s) 170, 266
CviJI RGCY 2 cut(s) 25, 219
CviKI_1 RGCY 2 cut(s) 25, 219
DpnI GATC 4 cut(s) 66, 230, 255, 271
DpnII GATC 4 cut(s) 64, 228, 253, 269
EcoRII CCWGG 1 cut(s) 102
FaeI CATG 2 cut(s) 173, 269
FaiI YATR 2 cut(s) 171, 267
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FatI CATG 2 cut(s) 169, 265
FblI GTMKAC 2 cut(s) 9, 284
Fnu4HI GCNGC 2 cut(s) 26, 149
Fsp4HI GCNGC 2 cut(s) 26, 149
FspBI CTAG 1 cut(s) 328
GluI GCNGC 2 cut(s) 26, 149
Hin1II CATG 2 cut(s) 173, 269
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 1 cut(s) 116
Hpy166II GTNNAC 3 cut(s) 10, 178, 285
Hpy188I TCNGA 2 cut(s) 96, 258
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 3 cut(s) 10, 178, 285
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 2 cut(s) 7, 241
HpyCH4V TGCA 5 cut(s) 28, 169, 178, 314, 320
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 166, 175
Hsp92II CATG 2 cut(s) 173, 269
Kzo9I GATC 4 cut(s) 64, 228, 253, 269
LpnPI CCDG 6 cut(s) 48, 74, 89, 116, 177, 273
Lsp1109I GCAGC 2 cut(s) 12, 135
MaeI CTAG 1 cut(s) 328
MaeIII GTNAC 1 cut(s) 305
MalI GATC 4 cut(s) 66, 230, 255, 271
MboI GATC 4 cut(s) 64, 228, 253, 269
MboII GAAGA 1 cut(s) 303
MflI RGATCY 2 cut(s) 64, 269
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 3 cut(s) 18, 98, 244
MroXI GAANNNNTTC 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 3 cut(s) 157, 166, 175
NdeII GATC 4 cut(s) 64, 228, 253, 269
NlaIII CATG 2 cut(s) 173, 269
NspI RCATGY 1 cut(s) 173
NspV TTCGAA 1 cut(s) 119
PaeI GCATGC 1 cut(s) 173
PaqCI CACCTGC 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 2 cut(s) 27, 150
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PstI CTGCAG 1 cut(s) 30
PsuI RGATCY 2 cut(s) 64, 269
SalI GTCGAC 1 cut(s) 8
SatI GCNGC 2 cut(s) 26, 149
Sau3AI GATC 4 cut(s) 64, 228, 253, 269
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 180
SetI ASST 2 cut(s) 319, 325
SfcI CTRYAG 1 cut(s) 26
SfuI TTCGAA 1 cut(s) 119
SphI GCATGC 1 cut(s) 173
Sse9I AATT 3 cut(s) 18, 98, 244
SspMI CTAG 1 cut(s) 328
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 7, 241
TaqI TCGA 2 cut(s) 9, 119
TasI AATT 3 cut(s) 18, 98, 244
TfiI GAWTC 1 cut(s) 116
TscAI CASTG 1 cut(s) 316
TseI GCWGC 2 cut(s) 25, 148
TspDTI ATGAA 1 cut(s) 254
TspRI CASTG 1 cut(s) 316
VneI GTGCAC 1 cut(s) 176
XapI RAATTY 2 cut(s) 98, 244
XceI RCATGY 1 cut(s) 173
XmiI GTMKAC 2 cut(s) 9, 284
XmnI GAANNNNTTC 1 cut(s) 218
XspI CTAG 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.