MD03G1039700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0017556
Physical Location & Seq
Reverse (-)
3149766 .. 3149978
213 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1039700.v1.1.491

Sequence Viewer

Length: 213 bp
ATGTGCTGTCCGGGTAGGGTCTGCATGCTGTGCACCTGTTTGATTCTGGTGGTGGTTCTGGTGGGTATACTATTCGGGTTCGGAGTCTTCAAGAACGGATTCCACAAGCTGAAAGATACTGTGAATATCTGTGACCCGAGTGTTCCAGGGTCTTTCTGCGGGGCCGGGTCGGGTAGGCCCTTCTTGGGTTATGCTGCTCCCCCACCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.34

Weight (kDa)

8.57

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13275
malus_domestica MD03G1039700.v1.1 MD11G1040400.v1.1
prunus_persica Prupe.6G032000_v2.0.a1
pyrus_communis pycom03g03060 pycom11g03490
rosa_chinensis RchiOBHm_Chr5g0075191
rosa_roxburghii Rroxscaffold_1G00006410 Rroxscaffold_1G00044420
rosa_rugosa Rorug05G0437300
rosa_wichuraiana Rw5G022900 Rw5G045860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 67
AciI CCGC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 91
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw21I GWGCWC 1 cut(s) 35
Alw44I GTGCAC 1 cut(s) 31
Ama87I CYCGRG 1 cut(s) 136
AoxI GGCC 2 cut(s) 162, 176
ApaLI GTGCAC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 194
Asp700I GAANNNNTTC 1 cut(s) 98
AspS9I GGNCC 2 cut(s) 162, 177
AsuC2I CCSGG 2 cut(s) 12, 166
AvaI CYCGRG 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 147
BcnI CCSGG 2 cut(s) 12, 166
BfaI CTAG 1 cut(s) 211
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 3 cut(s) 12, 147, 166
BmeT110I CYCGRG 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 162, 177
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 3 cut(s) 12, 147, 166
BpiI GAAGAC 1 cut(s) 79
BpuMI CCSGG 2 cut(s) 12, 166
BsaJI CCNNGG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 185
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 1 cut(s) 181
BshFI GGCC 2 cut(s) 164, 178
BsiHKAI GWGCWC 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 136
BsiSI CCGG 2 cut(s) 11, 165
BslI CCNNNNNNNGG 1 cut(s) 185
BsnI GGCC 2 cut(s) 164, 178
BsoBI CYCGRG 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 35
BspACI CCGC 1 cut(s) 159
BspANI GGCC 2 cut(s) 164, 178
BspLI GGNNCC 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 146
BssNAI GTATAC 1 cut(s) 68
Bst1107I GTATAC 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 121
BstAPI GCANNNNNTGC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 26
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstNI CCWGG 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 3 cut(s) 10, 145, 164
BstSLI GKGCMC 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 79
BstZ17I GTATAC 1 cut(s) 68
BsuRI GGCC 2 cut(s) 164, 178
Cac8I GCNNGC 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 162, 177
CviAII CATG 1 cut(s) 25
CviJI RGCY 3 cut(s) 109, 164, 178
CviKI_1 RGCY 3 cut(s) 109, 164, 178
Eco88I CYCGRG 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 145
FaeI CATG 1 cut(s) 28
FaiI YATR 3 cut(s) 26, 68, 192
FatI CATG 1 cut(s) 24
FauI CCCGC 1 cut(s) 152
FblI GTMKAC 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 1 cut(s) 211
GluI GCNGC 1 cut(s) 195
HaeIII GGCC 2 cut(s) 164, 178
HapII CCGG 2 cut(s) 11, 165
Hin1II CATG 1 cut(s) 28
HinfI GANTC 3 cut(s) 43, 84, 99
HpaII CCGG 2 cut(s) 11, 165
Hpy166II GTNNAC 2 cut(s) 33, 68
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 2 cut(s) 33, 68
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 2 cut(s) 24, 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
Hsp92II CATG 1 cut(s) 28
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 7 cut(s) 24, 32, 44, 49, 132, 159, 178
Lsp1109I GCAGC 1 cut(s) 181
MaeI CTAG 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 131
MboII GAAGA 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 35
MlyI GAGTC 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 98
MspI CCGG 2 cut(s) 11, 165
MspR9I CCNGG 3 cut(s) 12, 147, 166
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 30
NciI CCSGG 2 cut(s) 12, 166
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 1 cut(s) 28
PaeI GCATGC 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 43, 99
PkrI GCNGC 1 cut(s) 196
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 2 cut(s) 162, 177
SatI GCNGC 1 cut(s) 195
Sau96I GGNCC 2 cut(s) 162, 177
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 3 cut(s) 12, 147, 166
SduI GDGCHC 1 cut(s) 35
SetI ASST 3 cut(s) 38, 111, 208
SphI GCATGC 1 cut(s) 28
SsiI CCGC 1 cut(s) 159
SspMI CTAG 1 cut(s) 211
StyD4I CCNGG 3 cut(s) 10, 145, 164
TaaI ACNGT 1 cut(s) 121
TfiI GAWTC 2 cut(s) 43, 99
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 131
TspGWI ACGGA 1 cut(s) 111
VneI GTGCAC 1 cut(s) 31
XceI RCATGY 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 67
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.