Rw5G045860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0017556
Physical Location & Seq
Forward (+)
79865910 .. 79866116
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G045860.1

Sequence Viewer

Length: 207 bp
ATGTGCTTCCCGGGGAGAGTGTGCATGTGCTGCACGTGCCTGATTCTGGTGGCGATACTGATCGGGATGTTGTTCGGGTTCGGAGTCTTCAAGAACGGGTTTCACAAGCTGAAGGACACTGTGGATTATTGTGATCCCAATGTTCATGGCTCTCTCTGTGGCAGCAGACCCTTCTTGGGTTACGCTGCACCGCCTCCTTACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.44

Weight (kDa)

8.21

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13275
malus_domestica MD03G1039700.v1.1 MD11G1040400.v1.1
prunus_persica Prupe.6G032000_v2.0.a1
pyrus_communis pycom03g03060 pycom11g03490
rosa_chinensis RchiOBHm_Chr5g0075191
rosa_roxburghii Rroxscaffold_1G00006410 Rroxscaffold_1G00044420
rosa_rugosa Rorug05G0437300
rosa_wichuraiana Rw5G022900 Rw5G045860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 191
AclWI GGATC 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 131
AcvI CACGTG 1 cut(s) 36
AfiI CCNNNNNNNGG 2 cut(s) 46, 176
AgsI TTSAA 1 cut(s) 91
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
AlwI GGATC 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 10
ApeKI GCWGC 3 cut(s) 30, 162, 185
AsuC2I CCSGG 2 cut(s) 11, 12
AvaI CYCGRG 1 cut(s) 10
BbrPI CACGTG 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 79
BbvI GCAGC 3 cut(s) 17, 172, 174
BcnI CCSGG 2 cut(s) 11, 12
BfaI CTAG 1 cut(s) 205
BisI GCNGC 3 cut(s) 31, 163, 186
BlsI GCNGC 3 cut(s) 32, 164, 187
Bme1390I CCNGG 2 cut(s) 11, 12
BmeT110I CYCGRG 1 cut(s) 10
BmrFI CCNGG 2 cut(s) 11, 12
BpiI GAAGAC 1 cut(s) 79
BpuMI CCSGG 2 cut(s) 11, 12
BsaAI YACGTR 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 10, 11
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 176
Bse8I GATNNNNATC 1 cut(s) 59
BseDI CCNNGG 2 cut(s) 10, 11
BseGI GGATG 1 cut(s) 72
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 2 cut(s) 46, 176
BseXI GCAGC 3 cut(s) 17, 172, 174
BsgI GTGCAG 2 cut(s) 16, 171
BsiHKCI CYCGRG 1 cut(s) 10
BsiSI CCGG 1 cut(s) 11
BslI CCNNNNNNNGG 2 cut(s) 46, 176
BsoBI CYCGRG 1 cut(s) 10
Bsp143I GATC 2 cut(s) 60, 133
BspACI CCGC 1 cut(s) 191
BspPI GGATC 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 10, 11
BssMI GATC 2 cut(s) 60, 133
Bst4CI ACNGT 1 cut(s) 121
BstAPI GCANNNNNTGC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 36
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 2 cut(s) 63, 136
BstMBI GATC 2 cut(s) 60, 133
BstMWI GCNNNNNNNGC 2 cut(s) 30, 36
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 9, 10
BstV1I GCAGC 3 cut(s) 17, 172, 174
BstV2I GAAGAC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 117
Cfr9I CCCGGG 1 cut(s) 10
CviAII CATG 2 cut(s) 25, 146
CviJI RGCY 2 cut(s) 109, 150
CviKI_1 RGCY 2 cut(s) 109, 150
DpnI GATC 2 cut(s) 62, 135
DpnII GATC 2 cut(s) 60, 133
Eco57I CTGAAG 1 cut(s) 131
Eco72I CACGTG 1 cut(s) 36
Eco88I CYCGRG 1 cut(s) 10
FaeI CATG 2 cut(s) 28, 149
FaiI YATR 2 cut(s) 26, 147
FatI CATG 2 cut(s) 24, 145
Fnu4HI GCNGC 3 cut(s) 31, 163, 186
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 3 cut(s) 31, 163, 186
FspBI CTAG 1 cut(s) 205
GluI GCNGC 3 cut(s) 31, 163, 186
HapII CCGG 1 cut(s) 11
Hin1II CATG 2 cut(s) 28, 149
HinfI GANTC 2 cut(s) 43, 84
HpaII CCGG 1 cut(s) 11
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 2 cut(s) 64, 91
HpyAV CCTTC 2 cut(s) 106, 181
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 3 cut(s) 24, 33, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 36
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 2 cut(s) 28, 149
Kzo9I GATC 2 cut(s) 60, 133
LpnPI CCDG 3 cut(s) 24, 32, 53
Lsp1109I GCAGC 3 cut(s) 17, 172, 174
MaeI CTAG 1 cut(s) 205
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 62, 135
MboI GATC 2 cut(s) 60, 133
MboII GAAGA 1 cut(s) 79
MlyI GAGTC 1 cut(s) 93
MnlI CCTC 1 cut(s) 204
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 2 cut(s) 11, 12
MwoI GCNNNNNNNGC 2 cut(s) 30, 36
NciI CCSGG 2 cut(s) 11, 12
NdeII GATC 2 cut(s) 60, 133
NlaIII CATG 2 cut(s) 28, 149
NspI RCATGY 1 cut(s) 28
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 3 cut(s) 32, 164, 187
PleI GAGTC 1 cut(s) 92
PmaCI CACGTG 1 cut(s) 36
PmlI CACGTG 1 cut(s) 36
PpsI GAGTC 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 36
PspCI CACGTG 1 cut(s) 36
SatI GCNGC 3 cut(s) 31, 163, 186
Sau3AI GATC 2 cut(s) 60, 133
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 2 cut(s) 11, 12
SetI ASST 2 cut(s) 38, 111
SmaI CCCGGG 1 cut(s) 12
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 205
StyD4I CCNGG 2 cut(s) 9, 10
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 38
TfiI GAWTC 1 cut(s) 43
TscAI CASTG 1 cut(s) 124
TseI GCWGC 3 cut(s) 30, 162, 185
TspDTI ATGAA 1 cut(s) 134
TspMI CCCGGG 1 cut(s) 10
TspRI CASTG 1 cut(s) 124
XceI RCATGY 1 cut(s) 28
XmaI CCCGGG 1 cut(s) 10
XspI CTAG 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.