Rroxscaffold_1G00044420

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
63387981 .. 63388187
207 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00044420.1

Sequence Viewer

Length: 207 bp
ATGTGCTGCCTAGGGAGAGTGTGTATGTGCTGCACTCGCCTAATTTTGGTGGTGATACTGACGGGGTTATTGTTCGGGTTCGGAGTCTTCAAGAACGGGTTTCACAAGCTGAAAGACACTGTGGATTATTGTGATCTGAATGTTCATAGGTCTCTCTGTGGGAGCAAACCTTTCTTGGGTTACGTTGCACCTCCACCTTACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.61

Weight (kDa)

8.77

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13275
malus_domestica MD03G1039700.v1.1 MD11G1040400.v1.1
prunus_persica Prupe.6G032000_v2.0.a1
pyrus_communis pycom03g03060 pycom11g03490
rosa_chinensis RchiOBHm_Chr5g0075191
rosa_roxburghii Rroxscaffold_1G00006410 Rroxscaffold_1G00044420
rosa_rugosa Rorug05G0437300
rosa_wichuraiana Rw5G022900 Rw5G045860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 46, 176
AgsI TTSAA 1 cut(s) 91
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 156
ApeKI GCWGC 2 cut(s) 6, 30
AspA2I CCTAGG 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 64
AvrII CCTAGG 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 2 cut(s) 11, 205
BisI GCNGC 2 cut(s) 7, 31
BlnI CCTAGG 1 cut(s) 10
BlsI GCNGC 2 cut(s) 8, 32
BpiI GAAGAC 1 cut(s) 79
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 176
BseDI CCNNGG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 46, 176
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 16
BslI CCNNNNNNNGG 2 cut(s) 46, 176
BsmAI GTCTC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 133
BspTNI GGTCTC 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 121
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 117
CviJI RGCY 1 cut(s) 109
CviKI_1 RGCY 1 cut(s) 109
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 10
FaiI YATR 2 cut(s) 26, 147
Fnu4HI GCNGC 2 cut(s) 7, 31
Fsp4HI GCNGC 2 cut(s) 7, 31
FspBI CTAG 2 cut(s) 11, 205
GluI GCNGC 2 cut(s) 7, 31
HinfI GANTC 1 cut(s) 84
HphI GGTGA 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 83, 138
Hpy188III TCNNGA 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 2 cut(s) 33, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 183
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 162
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 2 cut(s) 11, 205
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 179
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 1 cut(s) 79
MluCI AATT 1 cut(s) 42
MlyI GAGTC 1 cut(s) 93
MnlI CCTC 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 36
NdeII GATC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 8, 32
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
SatI GCNGC 2 cut(s) 7, 31
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 1 cut(s) 93
SetI ASST 6 cut(s) 111, 152, 172, 186, 193, 199
SgeI CNNG 8 cut(s) 23, 48, 75, 88, 103, 109, 118, 187
Sse9I AATT 1 cut(s) 42
SspMI CTAG 2 cut(s) 11, 205
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 186
TasI AATT 1 cut(s) 42
TscAI CASTG 1 cut(s) 124
TseI GCWGC 2 cut(s) 6, 30
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 1 cut(s) 124
XmaJI CCTAGG 1 cut(s) 10
XspI CTAG 2 cut(s) 11, 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.