pycom03g03060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0017556
Physical Location & Seq
Reverse (-)
2403902 .. 2404565
664 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g03060.2

Sequence Viewer

Length: 621 bp
ATGCTTGTAGCAGAAAAGGAAAATAACGGATCCTTTTTTCTTAACCCCCCTTTCGCAATTTGCTTGCCTTATAAGCTAACAATTCCCGTCGTGTTAAAGCGTTTCCATCTCCGAAAACGACCCGAATTGAATTCCCCCACATTATATCAAAAACCCATCAAAACCCACCTTCCAGATTCCAAGATCTCAAATTCCATTTTCTGGGTTCTGAAATTTCTAGAGATAGAGACAGAAACCCAAATCGGTGAGGTCGCTCGGAGGAAGAAGAAGCAGCGGCAGCTTAAAAGACTAAAATTTCCCCACATCCATCAAAAACCCAGTAAAACCCAATTCCCAGATTTTGAGATCTCAAATTCCAGTTTCTGGGTTCTGAAATTTCTAGAGAGAGAAACCAAATCAGAGGCAAAGATGTGCTGTCCGGGTAGGGTCTGCATGCTGTGCACCTGTTTGATTCTGGTGGTGGTTCTGGTGGGTATGCTATTCGGTTTCGGAGTCTTCAAGAACGGATTCCACAAGCTGAAAGATACTGTGAATATCTGTGACCCGACTGTTCCAGGGTCTTTCTGCGGGGCCGGGTCGGGTAGGCCCTTCTTGGGTTATGCTGCTCCCCCACCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.49

Weight (kDa)

9.72

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13275
malus_domestica MD03G1039700.v1.1 MD11G1040400.v1.1
prunus_persica Prupe.6G032000_v2.0.a1
pyrus_communis pycom03g03060 pycom11g03490
rosa_chinensis RchiOBHm_Chr5g0075191
rosa_roxburghii Rroxscaffold_1G00006410 Rroxscaffold_1G00044420
rosa_rugosa Rorug05G0437300
rosa_wichuraiana Rw5G022900 Rw5G045860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 72
AccB7I CCANNNNNTGG 2 cut(s) 201, 363
AciI CCGC 2 cut(s) 274, 567
AclWI GGATC 2 cut(s) 24, 37
AcsI RAATTY 6 cut(s) 130, 190, 212, 293, 352, 374
AfiI CCNNNNNNNGG 3 cut(s) 201, 363, 593
AgsI TTSAA 2 cut(s) 130, 499
AjnI CCWGG 1 cut(s) 553
AluBI AGCT 3 cut(s) 76, 280, 517
AluI AGCT 3 cut(s) 76, 280, 517
Alw21I GWGCWC 1 cut(s) 443
Alw26I GTCTC 1 cut(s) 221
Alw44I GTGCAC 1 cut(s) 439
AlwI GGATC 2 cut(s) 24, 37
AlwNI CAGNNNCTG 1 cut(s) 363
AoxI GGCC 2 cut(s) 570, 584
ApaLI GTGCAC 1 cut(s) 439
ApeKI GCWGC 3 cut(s) 271, 277, 602
ApoI RAATTY 6 cut(s) 130, 190, 212, 293, 352, 374
Asp700I GAANNNNTTC 1 cut(s) 506
AspS9I GGNCC 2 cut(s) 570, 585
AsuC2I CCSGG 2 cut(s) 420, 574
AsuHPI GGTGA 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 443
BamHI GGATCC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 487
Bbv12I GWGCWC 1 cut(s) 443
BbvI GCAGC 3 cut(s) 283, 289, 589
BccI CCATC 3 cut(s) 114, 164, 315
BciT130I CCWGG 1 cut(s) 555
BcnI CCSGG 2 cut(s) 420, 574
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 3 cut(s) 218, 380, 619
BglII AGATCT 2 cut(s) 183, 345
BisI GCNGC 4 cut(s) 272, 275, 278, 603
BlsI GCNGC 4 cut(s) 273, 276, 279, 604
Bme1390I CCNGG 3 cut(s) 420, 555, 574
BmgT120I GGNCC 2 cut(s) 570, 585
BmiI GGNNCC 2 cut(s) 31, 571
BmrFI CCNGG 3 cut(s) 420, 555, 574
BmrI ACTGGG 1 cut(s) 312
BmuI ACTGGG 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 487
BpuMI CCSGG 2 cut(s) 420, 574
BsaJI CCNNGG 1 cut(s) 554
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 363, 593
Bse1I ACTGG 2 cut(s) 318, 357
BseBI CCWGG 1 cut(s) 555
BseDI CCNNGG 1 cut(s) 554
BseGI GGATG 1 cut(s) 303
BseLI CCNNNNNNNGG 3 cut(s) 201, 363, 593
BseNI ACTGG 2 cut(s) 318, 357
BseSI GKGCMC 1 cut(s) 443
BseXI GCAGC 3 cut(s) 283, 289, 589
BshFI GGCC 2 cut(s) 572, 586
BsiHKAI GWGCWC 1 cut(s) 443
BsiSI CCGG 2 cut(s) 419, 573
BslI CCNNNNNNNGG 3 cut(s) 201, 363, 593
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 2 cut(s) 572, 586
Bsp1286I GDGCHC 1 cut(s) 443
Bsp143I GATC 3 cut(s) 29, 183, 345
BspACI CCGC 2 cut(s) 274, 567
BspANI GGCC 2 cut(s) 572, 586
BspLI GGNNCC 2 cut(s) 31, 571
BspPI GGATC 2 cut(s) 24, 37
BsrI ACTGG 2 cut(s) 318, 357
BssECI CCNNGG 1 cut(s) 554
BssMI GATC 3 cut(s) 29, 183, 345
Bst2UI CCWGG 1 cut(s) 555
Bst4CI ACNGT 2 cut(s) 529, 550
BstAPI GCANNNNNTGC 1 cut(s) 438
BstC8I GCNNGC 2 cut(s) 65, 434
BstF5I GGATG 1 cut(s) 303
BstKTI GATC 3 cut(s) 32, 186, 348
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 3 cut(s) 29, 183, 345
BstMWI GCNNNNNNNGC 3 cut(s) 73, 277, 438
BstNI CCWGG 1 cut(s) 555
BstNSI RCATGY 1 cut(s) 436
BstSCI CCNGG 3 cut(s) 418, 553, 572
BstSLI GKGCMC 1 cut(s) 443
BstV1I GCAGC 3 cut(s) 283, 289, 589
BstV2I GAAGAC 1 cut(s) 487
BstX2I RGATCY 3 cut(s) 29, 183, 345
BstYI RGATCY 3 cut(s) 29, 183, 345
BsuRI GGCC 2 cut(s) 572, 586
BtsCI GGATG 1 cut(s) 303
Cac8I GCNNGC 2 cut(s) 65, 434
CaiI CAGNNNCTG 1 cut(s) 363
Cfr13I GGNCC 2 cut(s) 570, 585
CviAII CATG 1 cut(s) 433
CviJI RGCY 5 cut(s) 76, 280, 517, 572, 586
CviKI_1 RGCY 5 cut(s) 76, 280, 517, 572, 586
DpnI GATC 3 cut(s) 31, 185, 347
DpnII GATC 3 cut(s) 29, 183, 345
EcoO109I RGGNCCY 1 cut(s) 585
EcoRI GAATTC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 553
FaeI CATG 1 cut(s) 436
FaiI YATR 5 cut(s) 72, 145, 434, 476, 600
FatI CATG 1 cut(s) 432
FauI CCCGC 1 cut(s) 560
Fnu4HI GCNGC 4 cut(s) 272, 275, 278, 603
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 4 cut(s) 272, 275, 278, 603
FspBI CTAG 3 cut(s) 218, 380, 619
GluI GCNGC 4 cut(s) 272, 275, 278, 603
HaeIII GGCC 2 cut(s) 572, 586
HapII CCGG 2 cut(s) 419, 573
Hin1II CATG 1 cut(s) 436
HinfI GANTC 4 cut(s) 176, 451, 492, 507
HpaII CCGG 2 cut(s) 419, 573
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 6 cut(s) 113, 210, 258, 372, 400, 491
Hpy188III TCNNGA 4 cut(s) 173, 218, 380, 499
Hpy8I GTNNAC 1 cut(s) 441
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 179, 598
HpyCH4III ACNGT 2 cut(s) 529, 550
HpyCH4V TGCA 2 cut(s) 432, 441
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 277, 438
Hsp92II CATG 1 cut(s) 436
Kzo9I GATC 3 cut(s) 29, 183, 345
LmnI GCTCC 1 cut(s) 610
Lsp1109I GCAGC 3 cut(s) 283, 289, 589
MaeI CTAG 3 cut(s) 218, 380, 619
MaeIII GTNAC 1 cut(s) 539
MalI GATC 3 cut(s) 31, 185, 347
MboI GATC 3 cut(s) 29, 183, 345
MboII GAAGA 3 cut(s) 274, 277, 487
MflI RGATCY 3 cut(s) 29, 183, 345
MhlI GDGCHC 1 cut(s) 443
MlyI GAGTC 1 cut(s) 501
MnlI CCTC 3 cut(s) 241, 252, 394
MroXI GAANNNNTTC 1 cut(s) 506
MseI TTAA 3 cut(s) 42, 95, 282
MspA1I CMGCKG 1 cut(s) 274
MspI CCGG 2 cut(s) 419, 573
MspR9I CCNGG 3 cut(s) 420, 555, 574
MvaI CCWGG 1 cut(s) 555
MwoI GCNNNNNNNGC 3 cut(s) 73, 277, 438
NciI CCSGG 2 cut(s) 420, 574
NdeII GATC 3 cut(s) 29, 183, 345
NlaIII CATG 1 cut(s) 436
NlaIV GGNNCC 2 cut(s) 31, 571
NmuCI GTSAC 1 cut(s) 539
NspI RCATGY 1 cut(s) 436
PaeI GCATGC 1 cut(s) 436
PdmI GAANNNNTTC 1 cut(s) 506
PfeI GAWTC 3 cut(s) 176, 451, 507
PflMI CCANNNNNTGG 2 cut(s) 201, 363
PkrI GCNGC 4 cut(s) 273, 276, 279, 604
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
PsiI TTATAA 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 553
PspGI CCWGG 1 cut(s) 553
PspN4I GGNNCC 2 cut(s) 31, 571
PspPI GGNCC 2 cut(s) 570, 585
PstNI CAGNNNCTG 1 cut(s) 363
PsuI RGATCY 3 cut(s) 29, 183, 345
SaqAI TTAA 3 cut(s) 42, 95, 282
SatI GCNGC 4 cut(s) 272, 275, 278, 603
Sau3AI GATC 3 cut(s) 29, 183, 345
Sau96I GGNCC 2 cut(s) 570, 585
SchI GAGTC 1 cut(s) 501
ScrFI CCNGG 3 cut(s) 420, 555, 574
SduI GDGCHC 1 cut(s) 443
SetI ASST 7 cut(s) 78, 171, 252, 282, 446, 519, 616
SphI GCATGC 1 cut(s) 436
SsiI CCGC 2 cut(s) 274, 567
SspMI CTAG 3 cut(s) 218, 380, 619
StyD4I CCNGG 3 cut(s) 418, 553, 572
TaaI ACNGT 2 cut(s) 529, 550
TauI GCSGC 1 cut(s) 277
TfiI GAWTC 3 cut(s) 176, 451, 507
Tru1I TTAA 3 cut(s) 42, 95, 282
Tru9I TTAA 3 cut(s) 42, 95, 282
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 3 cut(s) 271, 277, 602
Tsp45I GTSAC 1 cut(s) 539
TspGWI ACGGA 2 cut(s) 42, 519
Van91I CCANNNNNTGG 2 cut(s) 201, 363
VneI GTGCAC 1 cut(s) 439
XapI RAATTY 6 cut(s) 130, 190, 212, 293, 352, 374
XbaI TCTAGA 2 cut(s) 217, 379
XceI RCATGY 1 cut(s) 436
XmnI GAANNNNTTC 1 cut(s) 506
XspI CTAG 3 cut(s) 218, 380, 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.