AT3G13310

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016606
Physical Location & Seq
Reverse (-)
4310544 .. 4311629
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13310.1

Sequence Viewer

Length: 474 bp
ATGGCTGGAACCCTAGTTAACTCCGCCGGGAGATTCTCACCGGGAAATTGTATTCTTCCTCAACAGAGAACAGCCAGATTCTACAGCGGAACCGCGAGATTTCCCACCGGAGCTCCGTCGTTTAAGGCTTCAGCTCAGACGCTTAACGCCGAGCCAGCTGTAACGGAATCCGTTCGTCGGAGAGTTTCTAGCCTCTACGAATTACTGAAAGTGAATGAAACGGCGTCCTTGACGGAGATCAAGACGGCGTACCGGAGCTTAGCTAAAGTATATCATCCAGATGCGTCGGAATCGGACGGTCGAGATTTTATGGAGATTCACAAAGCTTACGCGACACTTGCGGATCCGACTACAAGAGCGATTTACGACTCGACGCTTAGAGTACCACGGAGACGGGTACACGCCGGAGCGATGGGTCGGTCGGGGCGGGTTTACGCTACGACCCGGAGATGGGAGACGGATCAGTGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

157

Amino Acids

17.45

Weight (kDa)

10.0

Isoelectric Point (pI)

64.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 65 - 123 9.9e-19 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016606)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13310
fragaria_vesca FvH4_3g41970
malus_domestica MD03G1040000.v1.1 MD11G1041400.v1.1
prunus_persica Prupe.6G032200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075161
rosa_laevigata RLG00000036536
rosa_multiflora Rmu_sc0008066.1_g000010
rosa_roxburghii Rroxscaffold_1G00006440
rosa_rugosa Rorug05G0437100
rosa_samantha Rh5BG515400 Rh5CG539200 Rh5DG528100
rosa_wichuraiana Rw5G045840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 95, 332
AciI CCGC 5 cut(s) 24, 87, 93, 341, 427
AclWI GGATC 3 cut(s) 338, 351, 468
AcuI CTGAAG 1 cut(s) 114
AcyI GRCGYC 1 cut(s) 224
AfaI GTAC 3 cut(s) 251, 384, 399
AfiI CCNNNNNNNGG 3 cut(s) 177, 450, 451
AluBI AGCT 6 cut(s) 113, 134, 158, 258, 263, 326
AluI AGCT 6 cut(s) 113, 134, 158, 258, 263, 326
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 2 cut(s) 385, 449
AlwI GGATC 3 cut(s) 338, 351, 468
Asp700I GAANNNNTTC 1 cut(s) 171
AsuC2I CCSGG 3 cut(s) 28, 42, 445
AsuHPI GGTGA 1 cut(s) 30
BamHI GGATCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 115
BccI CCATC 2 cut(s) 406, 444
BceAI ACGGC 2 cut(s) 237, 261
BcnI CCSGG 3 cut(s) 28, 42, 445
BcoDI GTCTC 2 cut(s) 385, 449
BfaI CTAG 2 cut(s) 14, 189
BfmI CTRYAG 1 cut(s) 82
BlpI GCTNAGC 1 cut(s) 259
Bme1390I CCNGG 3 cut(s) 28, 42, 445
BmiI GGNNCC 3 cut(s) 10, 91, 345
BmrFI CCNGG 3 cut(s) 28, 42, 445
BmsI GCATC 1 cut(s) 271
Bpu1102I GCTNAGC 1 cut(s) 259
BpuMI CCSGG 3 cut(s) 28, 42, 445
BsaHI GRCGYC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 386
BsaWI WCCGGW 2 cut(s) 107, 252
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 450, 451
BseDI CCNNGG 1 cut(s) 386
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 3 cut(s) 177, 450, 451
BseMII CTCAG 1 cut(s) 149
Bsh1236I CGCG 2 cut(s) 95, 332
Bsh1285I CGRYCG 2 cut(s) 301, 422
BsiEI CGRYCG 2 cut(s) 301, 422
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 6 cut(s) 27, 41, 108, 253, 405, 445
BslI CCNNNNNNNGG 3 cut(s) 177, 450, 451
BsmAI GTCTC 2 cut(s) 385, 449
BsmBI CGTCTC 2 cut(s) 385, 449
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 3 cut(s) 237, 343, 460
Bsp1720I GCTNAGC 1 cut(s) 259
BspACI CCGC 5 cut(s) 24, 87, 93, 341, 427
BspCNI CTCAG 1 cut(s) 148
BspFNI CGCG 2 cut(s) 95, 332
BspLI GGNNCC 3 cut(s) 10, 91, 345
BspPI GGATC 3 cut(s) 338, 351, 468
BssECI CCNNGG 1 cut(s) 386
BssMI GATC 3 cut(s) 237, 343, 460
BssNI GRCGYC 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 299
BstACI GRCGYC 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 3 cut(s) 135, 259, 377
BstDSI CCRYGG 1 cut(s) 386
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 2 cut(s) 95, 332
BstKTI GATC 3 cut(s) 240, 346, 463
BstMAI GTCTC 2 cut(s) 385, 449
BstMBI GATC 3 cut(s) 237, 343, 460
BstMCI CGRYCG 2 cut(s) 301, 422
BstMWI GCNNNNNNNGC 2 cut(s) 155, 338
BstSCI CCNGG 3 cut(s) 26, 40, 443
BstSFI CTRYAG 1 cut(s) 82
BstUI CGCG 2 cut(s) 95, 332
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BtgI CCRYGG 1 cut(s) 386
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 470
Cac8I GCNNGC 1 cut(s) 156
CseI GACGC 4 cut(s) 148, 213, 273, 382
Csp6I GTAC 3 cut(s) 250, 383, 398
CviQI GTAC 3 cut(s) 250, 383, 398
DdeI CTNAG 3 cut(s) 135, 259, 377
DpnI GATC 3 cut(s) 239, 345, 462
DpnII GATC 3 cut(s) 237, 343, 460
EciI GGCGGA 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 115
Esp3I CGTCTC 2 cut(s) 385, 449
FaiI YATR 2 cut(s) 271, 311
FauI CCCGC 1 cut(s) 420
FokI GGATG 1 cut(s) 261
FriOI GRGCYC 1 cut(s) 115
FspBI CTAG 2 cut(s) 14, 189
HapII CCGG 6 cut(s) 27, 41, 108, 253, 405, 445
HgaI GACGC 4 cut(s) 148, 213, 273, 382
Hin1I GRCGYC 1 cut(s) 224
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 6 cut(s) 33, 78, 167, 290, 316, 368
HpaI GTTAAC 1 cut(s) 19
HpaII CCGG 6 cut(s) 27, 41, 108, 253, 405, 445
HphI GGTGA 1 cut(s) 30
Hpy166II GTNNAC 3 cut(s) 19, 400, 433
Hpy188I TCNGA 5 cut(s) 138, 180, 289, 295, 348
Hpy188III TCNNGA 3 cut(s) 241, 278, 302
Hpy8I GTNNAC 3 cut(s) 19, 400, 433
Hpy99I CGWCG 4 cut(s) 121, 180, 289, 376
HpyCH4III ACNGT 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 338
HpyF3I CTNAG 3 cut(s) 135, 259, 377
Hsp92I GRCGYC 1 cut(s) 224
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 3 cut(s) 237, 343, 460
LmnI GCTCC 4 cut(s) 110, 118, 255, 407
LpnPI CCDG 9 cut(s) 40, 54, 88, 121, 168, 266, 291, 418, 458
LweI GCATC 1 cut(s) 271
MaeI CTAG 2 cut(s) 14, 189
MaeIII GTNAC 1 cut(s) 160
MalI GATC 3 cut(s) 239, 345, 462
MboI GATC 3 cut(s) 237, 343, 460
MboII GAAGA 1 cut(s) 47
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 2 cut(s) 46, 200
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 3 cut(s) 158, 267, 371
MnlI CCTC 2 cut(s) 69, 203
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 3 cut(s) 18, 123, 144
MslI CAYNNNNRTG 1 cut(s) 279
MspA1I CMGCKG 2 cut(s) 87, 158
MspI CCGG 6 cut(s) 27, 41, 108, 253, 405, 445
MspR9I CCNGG 3 cut(s) 28, 42, 445
MvnI CGCG 2 cut(s) 95, 332
MwoI GCNNNNNNNGC 2 cut(s) 155, 338
NciI CCSGG 3 cut(s) 28, 42, 445
NdeII GATC 3 cut(s) 237, 343, 460
NlaIV GGNNCC 3 cut(s) 10, 91, 345
NmeAIII GCCGAG 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 5 cut(s) 33, 78, 167, 290, 316
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 115
PspN4I GGNNCC 3 cut(s) 10, 91, 345
PsuI RGATCY 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 3 cut(s) 251, 384, 399
RsaNI GTAC 3 cut(s) 250, 383, 398
RseI CAYNNNNRTG 1 cut(s) 279
SacI GAGCTC 1 cut(s) 115
SaqAI TTAA 3 cut(s) 18, 123, 144
Sau3AI GATC 3 cut(s) 237, 343, 460
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 3 cut(s) 28, 42, 445
SduI GDGCHC 1 cut(s) 115
SetI ASST 6 cut(s) 115, 136, 160, 260, 265, 328
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 2 cut(s) 46, 200
SsiI CCGC 5 cut(s) 24, 87, 93, 341, 427
SspMI CTAG 2 cut(s) 14, 189
SstI GAGCTC 1 cut(s) 115
StyD4I CCNGG 3 cut(s) 26, 40, 443
TaaI ACNGT 1 cut(s) 299
TaqI TCGA 2 cut(s) 301, 371
TaqII GACCGA 1 cut(s) 408
TasI AATT 2 cut(s) 46, 200
TfiI GAWTC 5 cut(s) 33, 78, 167, 290, 316
Tru1I TTAA 3 cut(s) 18, 123, 144
Tru9I TTAA 3 cut(s) 18, 123, 144
TscAI CASTG 1 cut(s) 470
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 6 cut(s) 105, 160, 179, 248, 403, 473
TspRI CASTG 1 cut(s) 470
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 2 cut(s) 14, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.