MD03G1040000.v1.1

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0016606
Physical Location & Seq
Reverse (-)
3164705 .. 3165139
435 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1040000.v1.1.491

Sequence Viewer

Length: 435 bp
ATGTCTACACCCCTCTTCCCCTCGGCCGCAAGCCCCCTTCCAAAAATGCCCCTGCCCCAGCGGCGCAGTTTCCAGATCAAGGCCTCTTCCGCCCAGGCGTTCACCGAGGCCAAGCCGCGGCACGGTGCCTCCGCGGCGAGTCTCTACGAGGTCCTCCGAGTCACAGCCAACGCGTCGCCAACGGAGATCAAGTCGGCGTACCGGAGCTTGGCCAAGCAATACCACCCGGACGCGTCGCGGTCGGAGTCCGACGGCCGGGATTTCATCCAGATTCACAACGCCTACGCCACGCTGTCCGATCCGGCGGCCCGGGAAGTGTATGACACGTCGTTGGGCGCTGCTCGCATTAATTTTAATCGGCGGAGAAGCTCGGTTGGGTTTCGAACCGACGGGTTTTACTCGACCCGGAGGTGGGAAACGGACCAGTGCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

145

Amino Acids

16.08

Weight (kDa)

9.92

Isoelectric Point (pI)

78.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 48 - 108 2.6e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016606)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13310
fragaria_vesca FvH4_3g41970
malus_domestica MD03G1040000.v1.1 MD11G1041400.v1.1
prunus_persica Prupe.6G032200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075161
rosa_laevigata RLG00000036536
rosa_multiflora Rmu_sc0008066.1_g000010
rosa_roxburghii Rroxscaffold_1G00006440
rosa_rugosa Rorug05G0437100
rosa_samantha Rh5BG515400 Rh5CG539200 Rh5DG528100
rosa_wichuraiana Rw5G045840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AccI GTMKAC 1 cut(s) 5
AccII CGCG 5 cut(s) 118, 134, 173, 233, 238
AclWI GGATC 1 cut(s) 293
AcoI YGGCCR 3 cut(s) 24, 210, 253
AfaI GTAC 1 cut(s) 200
AfiI CCNNNNNNNGG 7 cut(s) 79, 117, 122, 208, 255, 411, 412
AflIII ACRYGT 3 cut(s) 171, 231, 324
AjiI CACGTC 1 cut(s) 327
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 2 cut(s) 207, 369
AluI AGCT 2 cut(s) 207, 369
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 1 cut(s) 293
Ama87I CYCGRG 1 cut(s) 309
AoxI GGCC 6 cut(s) 24, 81, 108, 210, 253, 306
ApeKI GCWGC 1 cut(s) 338
AseI ATTAAT 1 cut(s) 348
AspLEI GCGC 2 cut(s) 66, 338
AspS9I GGNCC 3 cut(s) 151, 307, 421
AsuC2I CCSGG 5 cut(s) 227, 257, 310, 311, 406
AsuHPI GGTGA 1 cut(s) 94
AsuII TTCGAA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 309
AvaII GGWCC 2 cut(s) 151, 421
BalI TGGCCA 1 cut(s) 212
BanI GGYRCC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 325
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 95
BcnI CCSGG 5 cut(s) 227, 257, 310, 311, 406
BcoDI GTCTC 1 cut(s) 146
BfoI RGCGCY 1 cut(s) 339
BglI GCCNNNNNGGC 2 cut(s) 61, 134
BisI GCNGC 7 cut(s) 27, 62, 116, 119, 135, 306, 339
BlsI GCNGC 7 cut(s) 28, 63, 117, 120, 136, 307, 340
Bme1390I CCNGG 6 cut(s) 95, 227, 257, 310, 311, 406
Bme18I GGWCC 2 cut(s) 151, 421
BmeT110I CYCGRG 1 cut(s) 309
BmgBI CACGTC 1 cut(s) 327
BmgT120I GGNCC 3 cut(s) 151, 307, 421
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 6 cut(s) 95, 227, 257, 310, 311, 406
Bpu14I TTCGAA 1 cut(s) 382
BpuMI CCSGG 5 cut(s) 227, 257, 310, 311, 406
BsaJI CCNNGG 6 cut(s) 21, 93, 105, 116, 132, 309
BsaWI WCCGGW 1 cut(s) 201
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 176, 206
Bsc4I CCNNNNNNNGG 7 cut(s) 79, 117, 122, 208, 255, 411, 412
Bse1I ACTGG 1 cut(s) 424
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 6 cut(s) 21, 93, 105, 116, 132, 309
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 7 cut(s) 79, 117, 122, 208, 255, 411, 412
BseNI ACTGG 1 cut(s) 424
BseX3I CGGCCG 2 cut(s) 24, 253
BseXI GCAGC 1 cut(s) 325
BseYI CCCAGC 1 cut(s) 57
Bsh1236I CGCG 5 cut(s) 118, 134, 173, 233, 238
Bsh1285I CGRYCG 3 cut(s) 27, 242, 256
BshFI GGCC 6 cut(s) 26, 83, 110, 212, 255, 308
BshNI GGYRCC 1 cut(s) 125
BsiEI CGRYCG 3 cut(s) 27, 242, 256
BsiHKCI CYCGRG 1 cut(s) 309
BsiSI CCGG 6 cut(s) 202, 227, 256, 302, 310, 406
BslI CCNNNNNNNGG 7 cut(s) 79, 117, 122, 208, 255, 411, 412
BsmAI GTCTC 1 cut(s) 146
BsnI GGCC 6 cut(s) 26, 83, 110, 212, 255, 308
BsoBI CYCGRG 1 cut(s) 309
Bsp119I TTCGAA 1 cut(s) 382
Bsp143I GATC 3 cut(s) 75, 186, 298
BspANI GGCC 6 cut(s) 26, 83, 110, 212, 255, 308
BspFNI CGCG 5 cut(s) 118, 134, 173, 233, 238
BspLI GGNNCC 1 cut(s) 127
BspPI GGATC 1 cut(s) 293
BspT104I TTCGAA 1 cut(s) 382
BspT107I GGYRCC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 424
BssECI CCNNGG 6 cut(s) 21, 93, 105, 116, 132, 309
BssMI GATC 3 cut(s) 75, 186, 298
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 2 cut(s) 20, 91
BstBI TTCGAA 1 cut(s) 382
BstC8I GCNNGC 2 cut(s) 31, 343
BstDSI CCRYGG 2 cut(s) 116, 132
BstF5I GGATG 1 cut(s) 264
BstFNI CGCG 5 cut(s) 118, 134, 173, 233, 238
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 2 cut(s) 66, 338
BstKTI GATC 3 cut(s) 78, 189, 301
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 3 cut(s) 75, 186, 298
BstMCI CGRYCG 3 cut(s) 27, 242, 256
BstMWI GCNNNNNNNGC 4 cut(s) 61, 89, 134, 342
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 6 cut(s) 93, 225, 255, 308, 309, 404
BstUI CGCG 5 cut(s) 118, 134, 173, 233, 238
BstV1I GCAGC 1 cut(s) 325
BstZI CGGCCG 2 cut(s) 24, 253
BsuRI GGCC 6 cut(s) 26, 83, 110, 212, 255, 308
BtgI CCRYGG 2 cut(s) 116, 132
BtrI CACGTC 1 cut(s) 327
BtsCI GGATG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 431
Cac8I GCNNGC 2 cut(s) 31, 343
CfoI GCGC 2 cut(s) 66, 338
Cfr13I GGNCC 3 cut(s) 151, 307, 421
Cfr42I CCGCGG 2 cut(s) 119, 135
Cfr9I CCCGGG 1 cut(s) 309
CseI GACGC 3 cut(s) 162, 222, 239
Csp6I GTAC 1 cut(s) 199
CviQI GTAC 1 cut(s) 199
DpnI GATC 3 cut(s) 77, 188, 300
DpnII GATC 3 cut(s) 75, 186, 298
EaeI YGGCCR 3 cut(s) 24, 210, 253
EagI CGGCCG 2 cut(s) 24, 253
Eam1104I CTCTTC 2 cut(s) 20, 91
EarI CTCTTC 2 cut(s) 20, 91
EciI GGCGGA 2 cut(s) 79, 376
EclXI CGGCCG 2 cut(s) 24, 253
Eco147I AGGCCT 1 cut(s) 83
Eco47I GGWCC 2 cut(s) 151, 421
Eco52I CGGCCG 2 cut(s) 24, 253
Eco88I CYCGRG 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 93
FaiI YATR 1 cut(s) 321
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 7 cut(s) 27, 62, 116, 119, 135, 306, 339
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 7 cut(s) 27, 62, 116, 119, 135, 306, 339
GlaI GCGC 2 cut(s) 65, 337
GluI GCNGC 7 cut(s) 27, 62, 116, 119, 135, 306, 339
GsaI CCCAGC 1 cut(s) 61
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 6 cut(s) 26, 83, 110, 212, 255, 308
HapII CCGG 6 cut(s) 202, 227, 256, 302, 310, 406
HgaI GACGC 3 cut(s) 162, 222, 239
HhaI GCGC 2 cut(s) 66, 338
Hin6I GCGC 2 cut(s) 64, 336
HinP1I GCGC 2 cut(s) 64, 336
HinfI GANTC 4 cut(s) 139, 159, 245, 271
HpaII CCGG 6 cut(s) 202, 227, 256, 302, 310, 406
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 6, 102
Hpy188I TCNGA 4 cut(s) 158, 244, 250, 298
Hpy188III TCNNGA 2 cut(s) 73, 268
Hpy8I GTNNAC 2 cut(s) 6, 102
Hpy99I CGWCG 5 cut(s) 178, 238, 254, 331, 392
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 89, 134, 342
HpySE526I ACGT 1 cut(s) 326
HspAI GCGC 2 cut(s) 64, 336
KspI CCGCGG 2 cut(s) 119, 135
Kzo9I GATC 3 cut(s) 75, 186, 298
LmnI GCTCC 1 cut(s) 204
Lsp1109I GCAGC 1 cut(s) 325
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 160
MalI GATC 3 cut(s) 77, 188, 300
MboI GATC 3 cut(s) 75, 186, 298
MboII GAAGA 2 cut(s) 7, 78
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 1 cut(s) 349
MluI ACGCGT 2 cut(s) 171, 231
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 3 cut(s) 148, 168, 254
MmeI TCCRAC 2 cut(s) 222, 273
MnlI CCTC 8 cut(s) 23, 31, 94, 100, 139, 142, 164, 402
Mox20I TGGCCA 1 cut(s) 212
MscI TGGCCA 1 cut(s) 212
MseI TTAA 2 cut(s) 348, 354
Msp20I TGGCCA 1 cut(s) 212
MspA1I CMGCKG 3 cut(s) 61, 118, 134
MspI CCGG 6 cut(s) 202, 227, 256, 302, 310, 406
MspR9I CCNGG 6 cut(s) 95, 227, 257, 310, 311, 406
MvaI CCWGG 1 cut(s) 95
MvnI CGCG 5 cut(s) 118, 134, 173, 233, 238
MwoI GCNNNNNNNGC 4 cut(s) 61, 89, 134, 342
NciI CCSGG 5 cut(s) 227, 257, 310, 311, 406
NdeII GATC 3 cut(s) 75, 186, 298
NlaIV GGNNCC 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 160
NspV TTCGAA 1 cut(s) 382
PceI AGGCCT 1 cut(s) 83
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 7 cut(s) 28, 63, 117, 120, 136, 307, 340
PleI GAGTC 3 cut(s) 147, 167, 253
PpsI GAGTC 3 cut(s) 147, 167, 253
PpuMI RGGWCCY 1 cut(s) 151
PshBI ATTAAT 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 57
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 3 cut(s) 151, 307, 421
PspPPI RGGWCCY 1 cut(s) 151
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SacII CCGCGG 2 cut(s) 119, 135
SaqAI TTAA 2 cut(s) 348, 354
SatI GCNGC 7 cut(s) 27, 62, 116, 119, 135, 306, 339
Sau3AI GATC 3 cut(s) 75, 186, 298
Sau96I GGNCC 3 cut(s) 151, 307, 421
SchI GAGTC 3 cut(s) 148, 168, 254
ScrFI CCNGG 6 cut(s) 95, 227, 257, 310, 311, 406
SetI ASST 5 cut(s) 153, 209, 329, 371, 413
Sfr303I CCGCGG 2 cut(s) 119, 135
SfuI TTCGAA 1 cut(s) 382
SgrBI CCGCGG 2 cut(s) 119, 135
SinI GGWCC 2 cut(s) 151, 421
SmaI CCCGGG 1 cut(s) 311
Sse9I AATT 1 cut(s) 349
SseBI AGGCCT 1 cut(s) 83
StuI AGGCCT 1 cut(s) 83
StyD4I CCNGG 6 cut(s) 93, 225, 255, 308, 309, 404
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 1 cut(s) 329
TaqI TCGA 2 cut(s) 382, 401
TasI AATT 1 cut(s) 349
TauI GCSGC 6 cut(s) 29, 64, 118, 121, 137, 308
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 2 cut(s) 348, 354
Tru9I TTAA 2 cut(s) 348, 354
TscAI CASTG 1 cut(s) 431
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 253
TspGWI ACGGA 2 cut(s) 197, 434
TspMI CCCGGG 1 cut(s) 309
TspRI CASTG 1 cut(s) 431
VpaK11BI GGWCC 2 cut(s) 151, 421
VspI ATTAAT 1 cut(s) 348
XmaI CCCGGG 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.