MD11G1041400.v1.1

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016606
Physical Location & Seq
Reverse (-)
3536305 .. 3536739
435 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1041400.v1.1.491

Sequence Viewer

Length: 435 bp
ATGTCTACAACCCTCTTCCCCTCCGCCGCAAACCCCCTTCCCCAAATGCCCCTCCCCCAGCGGCGCAGTTTCCAGATCAAGGCCTCCTCCGCCCAGGCCTTCACCGAGGCCAAGCCGCGACCCGGTGCCTCGGCGGCGAGCCTCTACGACGTCCTCCGGGTCACGGCCAACGCCTCCCAATCGGAGATCAAGTCAGCGTACCGGAGCTTGGCCAAGGAATACCACCCGGACGCGTCGCGGTCGGAGTCCGACGGCCGGGATTTCATCCAGATTCACAACGCCTACGCCACGCTGTCCGATCCGGCGGCCCGTGCGGTGTACGACATGTCGGTGGGCGCTGGTCACATTGATTTTAATCGGCGGAGGAGCTCGGTCGGGTTTCGAGCCGACGGGTTTTACTCGACCCGGAGGTGGGAAACGGACCAGTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

145

Amino Acids

15.97

Weight (kDa)

9.46

Isoelectric Point (pI)

83.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 48 - 108 1e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016606)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13310
fragaria_vesca FvH4_3g41970
malus_domestica MD03G1040000.v1.1 MD11G1041400.v1.1
prunus_persica Prupe.6G032200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075161
rosa_laevigata RLG00000036536
rosa_multiflora Rmu_sc0008066.1_g000010
rosa_roxburghii Rroxscaffold_1G00006440
rosa_rugosa Rorug05G0437100
rosa_samantha Rh5BG515400 Rh5CG539200 Rh5DG528100
rosa_wichuraiana Rw5G045840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
AccB1I GGYRCC 1 cut(s) 125
AccI GTMKAC 1 cut(s) 5
AccII CGCG 3 cut(s) 118, 233, 238
AclWI GGATC 1 cut(s) 293
AcoI YGGCCR 3 cut(s) 165, 210, 253
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 2 cut(s) 200, 320
AfiI CCNNNNNNNGG 7 cut(s) 79, 122, 163, 208, 255, 411, 412
AflIII ACRYGT 2 cut(s) 231, 324
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 2 cut(s) 207, 369
AluI AGCT 2 cut(s) 207, 369
Alw21I GWGCWC 1 cut(s) 371
AlwI GGATC 1 cut(s) 293
AoxI GGCC 7 cut(s) 81, 96, 108, 165, 210, 253, 306
AspLEI GCGC 2 cut(s) 66, 338
AspS9I GGNCC 2 cut(s) 307, 421
AsuC2I CCSGG 5 cut(s) 123, 158, 227, 257, 406
AsuHPI GGTGA 1 cut(s) 94
AvaII GGWCC 1 cut(s) 421
BalI TGGCCA 1 cut(s) 212
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 371
Bbv12I GWGCWC 1 cut(s) 371
BceAI ACGGC 2 cut(s) 180, 268
BciT130I CCWGG 1 cut(s) 95
BcnI CCSGG 5 cut(s) 123, 158, 227, 257, 406
BfoI RGCGCY 1 cut(s) 339
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 5 cut(s) 27, 62, 116, 135, 306
BlsI GCNGC 5 cut(s) 28, 63, 117, 136, 307
Bme1390I CCNGG 6 cut(s) 95, 123, 158, 227, 257, 406
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 2 cut(s) 307, 421
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 6 cut(s) 95, 123, 158, 227, 257, 406
BpuMI CCSGG 5 cut(s) 123, 158, 227, 257, 406
BsaBI GATNNNNATC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 4 cut(s) 93, 105, 129, 213
BsaWI WCCGGW 1 cut(s) 201
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 7 cut(s) 79, 122, 163, 208, 255, 411, 412
Bse1I ACTGG 1 cut(s) 424
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 4 cut(s) 93, 105, 129, 213
BseGI GGATG 1 cut(s) 264
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 7 cut(s) 79, 122, 163, 208, 255, 411, 412
BseNI ACTGG 1 cut(s) 424
BseRI GAGGAG 2 cut(s) 76, 379
BseX3I CGGCCG 1 cut(s) 253
BseYI CCCAGC 1 cut(s) 57
Bsh1236I CGCG 3 cut(s) 118, 233, 238
Bsh1285I CGRYCG 3 cut(s) 242, 256, 375
BshFI GGCC 7 cut(s) 83, 98, 110, 167, 212, 255, 308
BshNI GGYRCC 1 cut(s) 125
BsiEI CGRYCG 3 cut(s) 242, 256, 375
BsiHKAI GWGCWC 1 cut(s) 371
BsiSI CCGG 7 cut(s) 123, 157, 202, 227, 256, 302, 406
BslI CCNNNNNNNGG 7 cut(s) 79, 122, 163, 208, 255, 411, 412
BsnI GGCC 7 cut(s) 83, 98, 110, 167, 212, 255, 308
Bsp1286I GDGCHC 1 cut(s) 371
Bsp143I GATC 3 cut(s) 75, 186, 298
BspANI GGCC 7 cut(s) 83, 98, 110, 167, 212, 255, 308
BspFNI CGCG 3 cut(s) 118, 233, 238
BspLI GGNNCC 1 cut(s) 127
BspPI GGATC 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 424
BssECI CCNNGG 4 cut(s) 93, 105, 129, 213
BssMI GATC 3 cut(s) 75, 186, 298
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 20
BstACI GRCGYC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 139
BstF5I GGATG 1 cut(s) 264
BstFNI CGCG 3 cut(s) 118, 233, 238
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 2 cut(s) 66, 338
BstKTI GATC 3 cut(s) 78, 189, 301
BstMBI GATC 3 cut(s) 75, 186, 298
BstMCI CGRYCG 3 cut(s) 242, 256, 375
BstMWI GCNNNNNNNGC 3 cut(s) 89, 134, 311
BstNI CCWGG 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 6 cut(s) 93, 121, 156, 225, 255, 404
BstUI CGCG 3 cut(s) 118, 233, 238
BstZI CGGCCG 1 cut(s) 253
BsuRI GGCC 7 cut(s) 83, 98, 110, 167, 212, 255, 308
BtsCI GGATG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 431
Cac8I GCNNGC 1 cut(s) 139
CfoI GCGC 2 cut(s) 66, 338
Cfr13I GGNCC 2 cut(s) 307, 421
CseI GACGC 2 cut(s) 222, 239
Csp6I GTAC 2 cut(s) 199, 319
CviAII CATG 1 cut(s) 325
CviQI GTAC 2 cut(s) 199, 319
DpnI GATC 3 cut(s) 77, 188, 300
DpnII GATC 3 cut(s) 75, 186, 298
EaeI YGGCCR 3 cut(s) 165, 210, 253
EagI CGGCCG 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
EciI GGCGGA 3 cut(s) 13, 79, 376
Ecl136II GAGCTC 1 cut(s) 369
EclXI CGGCCG 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 213
Eco147I AGGCCT 2 cut(s) 83, 98
Eco24I GRGCYC 1 cut(s) 371
Eco47I GGWCC 1 cut(s) 421
Eco52I CGGCCG 1 cut(s) 253
Eco53kI GAGCTC 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 371
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 1 cut(s) 328
FaiI YATR 1 cut(s) 326
FatI CATG 1 cut(s) 324
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 5 cut(s) 27, 62, 116, 135, 306
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 371
Fsp4HI GCNGC 5 cut(s) 27, 62, 116, 135, 306
GlaI GCGC 2 cut(s) 65, 337
GluI GCNGC 5 cut(s) 27, 62, 116, 135, 306
GsaI CCCAGC 1 cut(s) 61
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 7 cut(s) 83, 98, 110, 167, 212, 255, 308
HapII CCGG 7 cut(s) 123, 157, 202, 227, 256, 302, 406
HgaI GACGC 2 cut(s) 222, 239
HhaI GCGC 2 cut(s) 66, 338
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 1 cut(s) 328
Hin6I GCGC 2 cut(s) 64, 336
HinP1I GCGC 2 cut(s) 64, 336
HinfI GANTC 2 cut(s) 245, 271
HpaII CCGG 7 cut(s) 123, 157, 202, 227, 256, 302, 406
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 6, 319
Hpy188I TCNGA 4 cut(s) 184, 244, 250, 298
Hpy188III TCNNGA 2 cut(s) 73, 268
Hpy8I GTNNAC 2 cut(s) 6, 319
Hpy99I CGWCG 4 cut(s) 152, 238, 254, 392
HpyAV CCTTC 2 cut(s) 47, 109
HpyCH4IV ACGT 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 134, 311
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 1 cut(s) 328
HspAI GCGC 2 cut(s) 64, 336
Kzo9I GATC 3 cut(s) 75, 186, 298
LmnI GCTCC 2 cut(s) 204, 366
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 2 cut(s) 160, 341
MalI GATC 3 cut(s) 77, 188, 300
MboI GATC 3 cut(s) 75, 186, 298
MboII GAAGA 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 371
MlsI TGGCCA 1 cut(s) 212
MluI ACGCGT 1 cut(s) 231
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 2 cut(s) 222, 273
Mox20I TGGCCA 1 cut(s) 212
MscI TGGCCA 1 cut(s) 212
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 329
Msp20I TGGCCA 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 7 cut(s) 123, 157, 202, 227, 256, 302, 406
MspR9I CCNGG 6 cut(s) 95, 123, 158, 227, 257, 406
MvaI CCWGG 1 cut(s) 95
MvnI CGCG 3 cut(s) 118, 233, 238
MwoI GCNNNNNNNGC 3 cut(s) 89, 134, 311
NciI CCSGG 5 cut(s) 123, 158, 227, 257, 406
NdeII GATC 3 cut(s) 75, 186, 298
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 1 cut(s) 127
NmeAIII GCCGAG 1 cut(s) 110
NmuCI GTSAC 2 cut(s) 160, 341
NspI RCATGY 1 cut(s) 328
PceI AGGCCT 2 cut(s) 83, 98
PciI ACATGT 1 cut(s) 324
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 5 cut(s) 28, 63, 117, 136, 307
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
PscI ACATGT 1 cut(s) 324
Psp124BI GAGCTC 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 57
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 2 cut(s) 307, 421
RsaI GTAC 2 cut(s) 200, 320
RsaNI GTAC 2 cut(s) 199, 319
RseI CAYNNNNRTG 1 cut(s) 329
SacI GAGCTC 1 cut(s) 371
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 5 cut(s) 27, 62, 116, 135, 306
Sau3AI GATC 3 cut(s) 75, 186, 298
Sau96I GGNCC 2 cut(s) 307, 421
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 6 cut(s) 95, 123, 158, 227, 257, 406
SduI GDGCHC 1 cut(s) 371
SetI ASST 4 cut(s) 153, 209, 371, 413
SinI GGWCC 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 329
SseBI AGGCCT 2 cut(s) 83, 98
SstI GAGCTC 1 cut(s) 371
StuI AGGCCT 2 cut(s) 83, 98
StyD4I CCNGG 6 cut(s) 93, 121, 156, 225, 255, 404
StyI CCWWGG 1 cut(s) 213
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 382, 401
TaqII GACCGA 1 cut(s) 361
TauI GCSGC 5 cut(s) 29, 64, 118, 137, 308
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 1 cut(s) 431
TseFI GTSAC 2 cut(s) 160, 341
Tsp45I GTSAC 2 cut(s) 160, 341
TspDTI ATGAA 1 cut(s) 253
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 1 cut(s) 431
VpaK11BI GGWCC 1 cut(s) 421
XceI RCATGY 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 5
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.