Rorug05G0437100

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016606
Physical Location & Seq
Forward (+)
60692878 .. 60700861
7984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0437100.1

Sequence Viewer

Length: 3135 bp
ATGAGTGATCAGGGAGAAAAGACTTGTCCTCTTTGCGCGGAGGAAATGGATTTGACAGATCAGCAATTGAAACCTTGCAAATGCGGTTATGAGATATGTGTTTGGTGTTGGCACCACATAATGGACATGGCTGAGAAGGATGACACTGAGGGGCGGTGTCCTGCATGCCGTACCCCTTATGATAAGGAAAAGATTGTAGGGGCTGCGAAGTGTGAGAGATTGGTGGCTGAAATCCATACTGAGAGAAAGAAGTCTCAGAAGACAAAAGTTAAGCCAACCACTGAAGGAAGAAAGCAGCTTAGCAGTGTGCGAGTGATTCAACGGAACCTTGTTTACATAGTTGGGTTGCCTCTTAATCTGGCAGATGAAGATCAGCTACTGCAGCGTAAAGAATATTTTGCTCAATATGGGAAGGTTTTAAAGGTTTCTATGTCTCGGACAGCAGCTGGTGTCATTCAGCAATTTCCAAACAATACATGTAGTGTATATATTACTTACTCAAAAGAGGAGGAAGCGGTTCGCTGTATTCAAAATGTACATGGGTTTCTATTGGATGGAAGATCTTTGAGGGCTTGCTTTGGTACCACAAAGTATTGTCACGCATGGCTAAGAAATGTGCCTTGCACCAATCCCGATTGTTTGTATCTGCACGAGGTTGGATGTCATGAGGATAGTTTCACTAAAGATGAAATAATTTCTGCATACACTAGGAGTAGAGTACAACAAATTACTGGTACTCTAAACCCTATGCAGCGGCGGTCAGGGAGTGTGTTGCCTCCACCACTAGATGATTACTGTAATAGCAGTTCTGCTTCTACCGCAGGGCCTGTTGTTAAAAATGGTTCAAGTAATACTGGAACCCTCATTAAAGGTTCTCCTCCAAATGGAAGCTCTGGTAGATCTATTGCTCTTCCAGCTGCAGCCTCATGGGGTACGCGTGGTTCAAATTCTCAACCACCAGCTATGCAAATAATATATTCAAATGGACATACAAAACAGAAACCTGATACAGTCAGTTGCACAGTACCATTTTCTTCGGCTGCTGTTTCTACTGGCCAGGCTTCTATAGTGCATAGCGATGCAGGAAAGAGGTCAACTTTGAATGAAGACAGTCAGACTATGCAAGCTAAAGGTAAACTGGAATCACTGAAAATTGTGAAACAACACATTAGTGTGGATAGTCAAATTGCCCTGTCGGACAATCCTGCTGCACCCGATGAAGCTTCTGCTTCTGTTAATGTTAGCAGCCAGTTATCTTGTCCACCTGCATCCAAGGACAACAATAGAGGCAGTAGTATGCAGCCAACTAGCACTGCCACCAACCATAATCGGCAGCCTTTTAGTTCCTGTCATGAAAGTGAAAGTATTGTTTCTAATGAAGAAGCCGCCCAAAGCTTATGCTCCGATATATCTTTAATGAGCATTGATAGAAATTCTATGCTTGATCATTCTGGTGTAGTCAGACCTAATAATTCAGCTTCAGATAATTCGTATATTAAATCGCCTCGGGACCAAGGGTTACAACAATATTGTGCTGAACAGCCTAGAGAATCTCCTATAACAACTGAGAGAGCAGTAACAAGAGAACAATCCAACTGGTTATCAGAGTCACAACCATTACCTAGTATATCTTCTGAGGTGGAGGAGGATGTACTATCTTTTGATAATCAAAGACTCAAGGACCCAGAAGTGAGTCGTGTGCCGTATCTGTCTAGTTTGCCCAATGCAGTCCATGTTACAAATCACTCTAGGTCTCCGTTGCTACCTAGTGAGGGTTATGGTGCAGTTTATTCAAGTGCTGATCGCCTTTTTGTAGATAATAAAATTAGGGACAGCTCACTTCTATCTTCGACCAACATTCCGGTACAATCTAATGGTTACCATGAGAATTTTGTAAGCAGCTCTTCTGGTTTAGAGAGGCCTTTGGAGCATTCATTTCTTAACCGAAATGAAAGCCTGGGGAAGCATGGTCGAAGATTCTTGGGTGATGCTAATCCTGATTTCAGTAATGCTGTAGACAAGGGAGAGAGCAGCATAATCTCAAATATTTTATCAATGGACTTTGACACTTGGGATGACCCAATAACATCGCCTCAAAATTTCTCCAAGTTTTTGGGTGAATCTGATAGACAGTCTGGAGCTCAGAAAGTGTCCAGTTCGTGGAAGGTGCCAAATAATAATCAGTCAAGATTCTCTTTCGCAAGACAGGAGGATTCTAGAAATCAGGCATTTGATCTACAGTCATCTCAGAATGTCATTGGGCGGTTGTCACAGAACCAGGCACAGAACCAAGGATTCCATCATGGCTATTCTGAAAATCGAGATTTATGTTTGGATAATTTTGGAATTGGAAATGGTTTTCCTTCTAGTACTTTTGAAGATTCTGAAAATCACGCCAACAATCTTTTAGCCTTCTCTTCTAACAAGCTTTCTGCAGTTTCAAGGGCTCAAACCTCTGCTCCTCCGGGTTTCTCTGTGCCAAGCAGGGCCCCACCTCCGGGCTTTACTTCTCAAGAGAGAGTGGAGCATGATTTTGACTCACTGTCTGGGAATCTTTTGCACGATAACTCCTCTCTGTTGAGAAATGCCTATCAACCTCAGCCCACGGGGAATATTGGTAGCTCTGTGGATATTGAGTTTATGGATCCTGCTATATTGGCAGTTGGTAAAGGGAGACTGCAAGGTGGGCTTAACAACCCTGGTGTAGATATGAGATCCAACTTCCCTTCACAGTTAAGTGCCTTTGAAAACGATGCAAGGCTTCAGCTCTTGATGCAAAGATCCTTCTCCCAACAACAAAACCTTAGGTATCCTGATTTTGGGGATGGCTATTCTCATGTCAATGATAACTATGGAATGTCTTCGAGACTTTTGGATCAATCTCAGGCAAGCAATATGTCGCCTTTTGCTCAACTGTCTCTCCAACAATCCAGAAATAATCGGTCCATGTCAAATGGCCATTGGGATGGGTGGAATGAGGTTCAGGGCGGTAACACTATGGGTATGGCAGAGCTCCTGAGAAATGAGAGAGTAAATGAGAGACTAGGATACAATAAGTTCTATTCTGGTTATGAAGAATCAAAGTTTCGGATGCCCAGTTCTGGCGATCTGTATAACAGAACCTTTGGGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

1044

Amino Acids

115.0

Weight (kDa)

6.01

Isoelectric Point (pI)

56.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 9 - 61 1.5e-19 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016606)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13310
fragaria_vesca FvH4_3g41970
malus_domestica MD03G1040000.v1.1 MD11G1041400.v1.1
prunus_persica Prupe.6G032200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075161
rosa_laevigata RLG00000036536
rosa_multiflora Rmu_sc0008066.1_g000010
rosa_roxburghii Rroxscaffold_1G00006440
rosa_rugosa Rorug05G0437100
rosa_samantha Rh5BG515400 Rh5CG539200 Rh5DG528100
rosa_wichuraiana Rw5G045840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1273
Acc36I ACCTGC 1 cut(s) 1273
Acc65I GGTACC 1 cut(s) 581
AccB1I GGYRCC 3 cut(s) 111, 581, 2167
AccB7I CCANNNNNTGG 2 cut(s) 121, 2160
AccI GTMKAC 1 cut(s) 2016
AccII CGCG 2 cut(s) 38, 937
AclWI GGATC 5 cut(s) 2639, 2652, 2709, 2775, 2883
AcoI YGGCCR 2 cut(s) 1054, 2956
AcsI RAATTY 4 cut(s) 946, 1432, 1888, 2098
AcuI CTGAAG 3 cut(s) 303, 1464, 2747
AfiI CCNNNNNNNGG 8 cut(s) 121, 884, 1772, 2160, 2497, 2498, 2819, 3101
AflIII ACRYGT 2 cut(s) 476, 935
AhdI GACNNNNNGTC 1 cut(s) 2542
AjnI CCWGG 4 cut(s) 1056, 1956, 2277, 2698
AleI CACNNNNGTG 1 cut(s) 1170
AloI GAACNNNNNNTCC 2 cut(s) 3082, 3114
Alw21I GWGCWC 2 cut(s) 2143, 3015
Alw26I GTCTC 7 cut(s) 258, 438, 1758, 2668, 2860, 2922, 3034
AlwI GGATC 5 cut(s) 2639, 2652, 2709, 2775, 2883
AlwNI CAGNNNCTG 3 cut(s) 379, 446, 827
Ama87I CYCGRG 1 cut(s) 1506
AoxI GGCC 5 cut(s) 824, 1054, 1919, 2487, 2956
ApaI GGGCCC 1 cut(s) 2491
ApoI RAATTY 4 cut(s) 946, 1432, 1888, 2098
Asp700I GAANNNNTTC 2 cut(s) 516, 2860
Asp718I GGTACC 1 cut(s) 581
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 6 cut(s) 824, 1510, 1681, 2487, 2488, 2943
AsuC2I CCSGG 2 cut(s) 2466, 2499
AsuHPI GGTGA 2 cut(s) 1997, 2129
AvaI CYCGRG 1 cut(s) 1506
AvaII GGWCC 3 cut(s) 1510, 1681, 2943
AxyI CCTNAGG 1 cut(s) 2804
BaeGI GKGCMC 1 cut(s) 2491
BalI TGGCCA 2 cut(s) 1056, 2958
BamHI GGATCC 1 cut(s) 2644
BanI GGYRCC 3 cut(s) 111, 581, 2167
BanII GRGCYC 4 cut(s) 2143, 2449, 2491, 3015
BarI GAAGNNNNNNTAC 2 cut(s) 360, 392
BauI CACGAG 1 cut(s) 650
BbsI GAAGAC 3 cut(s) 266, 1113, 2853
Bbv12I GWGCWC 2 cut(s) 2143, 3015
BbvCI CCTCAGC 1 cut(s) 2598
BccI CCATC 4 cut(s) 548, 2307, 2819, 2960
BceAI ACGGC 2 cut(s) 153, 1687
BciT130I CCWGG 4 cut(s) 1058, 1958, 2279, 2700
BciVI GTATCC 2 cut(s) 2820, 3041
BclI TGATCA 2 cut(s) 7, 1444
BcnI CCSGG 2 cut(s) 2466, 2499
BcoDI GTCTC 7 cut(s) 258, 438, 1758, 2668, 2860, 2922, 3034
BfmI CTRYAG 6 cut(s) 380, 918, 1065, 2013, 2237, 2433
BfuAI ACCTGC 1 cut(s) 1273
BfuI GTATCC 2 cut(s) 2820, 3041
BglII AGATCT 2 cut(s) 560, 899
BlpI GCTNAGC 1 cut(s) 299
BmcAI AGTACT 1 cut(s) 2371
Bme1390I CCNGG 6 cut(s) 1058, 1958, 2279, 2466, 2499, 2700
Bme18I GGWCC 3 cut(s) 1510, 1681, 2943
BmeRI GACNNNNNGTC 1 cut(s) 2542
BmeT110I CYCGRG 1 cut(s) 1506
BmgT120I GGNCC 6 cut(s) 824, 1510, 1681, 2487, 2488, 2943
BmrFI CCNGG 6 cut(s) 1058, 1958, 2279, 2466, 2499, 2700
BmrI ACTGGG 1 cut(s) 3090
BmsI GCATC 6 cut(s) 1069, 1277, 1978, 2743, 2763, 3081
BmuI ACTGGG 1 cut(s) 3090
BpiI GAAGAC 3 cut(s) 266, 1113, 2853
BpmI CTGGAG 1 cut(s) 2157
Bpu10I CCTNAGC 1 cut(s) 2598
Bpu1102I GCTNAGC 1 cut(s) 299
BpuEI CTTGAG 2 cut(s) 1661, 2496
BpuMI CCSGG 2 cut(s) 2466, 2499
BsaBI GATNNNNATC 2 cut(s) 369, 1992
BsaI GGTCTC 1 cut(s) 1758
BsaJI CCNNGG 7 cut(s) 1272, 1505, 1513, 1957, 2290, 2604, 2698
BsaWI WCCGGW 1 cut(s) 1861
BsaXI ACNNNNNCTCC 6 cut(s) 2443, 2473, 2552, 2582, 2904, 2934
Bsc4I CCNNNNNNNGG 8 cut(s) 121, 884, 1772, 2160, 2497, 2498, 2819, 3101
Bse1I ACTGG 8 cut(s) 736, 859, 1057, 1143, 1249, 1601, 2154, 3096
Bse21I CCTNAGG 1 cut(s) 2804
Bse8I GATNNNNATC 2 cut(s) 369, 1992
BseBI CCWGG 4 cut(s) 1058, 1958, 2279, 2700
BseDI CCNNGG 7 cut(s) 1272, 1505, 1513, 1957, 2290, 2604, 2698
BseJI GATNNNNATC 2 cut(s) 369, 1992
BseLI CCNNNNNNNGG 8 cut(s) 121, 884, 1772, 2160, 2497, 2498, 2819, 3101
BseNI ACTGG 8 cut(s) 736, 859, 1057, 1143, 1249, 1601, 2154, 3096
BseRI GAGGAG 5 cut(s) 521, 867, 1658, 2451, 2560
BseSI GKGCMC 1 cut(s) 2491
BsgI GTGCAG 3 cut(s) 632, 1194, 1803
Bsh1236I CGCG 2 cut(s) 38, 937
BshFI GGCC 5 cut(s) 826, 1056, 1921, 2489, 2958
BshNI GGYRCC 3 cut(s) 111, 581, 2167
BsiHKAI GWGCWC 2 cut(s) 2143, 3015
BsiHKCI CYCGRG 1 cut(s) 1506
BsiSI CCGG 3 cut(s) 1862, 2465, 2498
BslFI GGGAC 2 cut(s) 1523, 1844
BslI CCNNNNNNNGG 8 cut(s) 121, 884, 1772, 2160, 2497, 2498, 2819, 3101
BsmAI GTCTC 7 cut(s) 258, 438, 1758, 2668, 2860, 2922, 3034
BsmFI GGGAC 2 cut(s) 1523, 1844
BsmI GAATGC 1 cut(s) 1930
BsnI GGCC 5 cut(s) 826, 1056, 1921, 2489, 2958
Bso31I GGTCTC 1 cut(s) 1758
BsoBI CYCGRG 1 cut(s) 1506
Bsp120I GGGCCC 1 cut(s) 2487
Bsp1286I GDGCHC 4 cut(s) 2143, 2449, 2491, 3015
Bsp1407I TGTACA 1 cut(s) 535
Bsp1720I GCTNAGC 1 cut(s) 299
BspANI GGCC 5 cut(s) 826, 1056, 1921, 2489, 2958
BspFNI CGCG 2 cut(s) 38, 937
BspHI TCATGA 2 cut(s) 664, 1351
BspMAI CTGCAG 3 cut(s) 384, 922, 2437
BspMI ACCTGC 1 cut(s) 1273
BspPI GGATC 5 cut(s) 2639, 2652, 2709, 2775, 2883
BspQI GCTCTTC 2 cut(s) 915, 1909
BspT107I GGYRCC 3 cut(s) 111, 581, 2167
BspTNI GGTCTC 1 cut(s) 1758
BsrGI TGTACA 1 cut(s) 535
BsrI ACTGG 8 cut(s) 736, 859, 1057, 1143, 1249, 1601, 2154, 3096
BssECI CCNNGG 7 cut(s) 1272, 1505, 1513, 1957, 2290, 2604, 2698
BssSI CACGAG 1 cut(s) 650
BssT1I CCWWGG 3 cut(s) 1272, 1513, 2290
Bst2BI CACGAG 1 cut(s) 650
Bst2UI CCWGG 4 cut(s) 1058, 1958, 2279, 2700
Bst4CI ACNGT 9 cut(s) 797, 1012, 1024, 1112, 2133, 2241, 2544, 2733, 2916
Bst6I CTCTTC 3 cut(s) 915, 1909, 2422
BstAUI TGTACA 1 cut(s) 535
BstC8I GCNNGC 4 cut(s) 166, 574, 1125, 2890
BstDSI CCRYGG 1 cut(s) 2604
BstEII GGTNACC 1 cut(s) 1877
BstFNI CGCG 2 cut(s) 38, 937
BstHHI GCGC 1 cut(s) 38
BstMAI GTCTC 7 cut(s) 258, 438, 1758, 2668, 2860, 2922, 3034
BstMWI GCNNNNNNNGC 7 cut(s) 382, 818, 914, 1927, 2657, 2686, 2773
BstNI CCWGG 4 cut(s) 1058, 1958, 2279, 2700
BstNSI RCATGY 2 cut(s) 168, 480
BstPI GGTNACC 1 cut(s) 1877
BstSCI CCNGG 6 cut(s) 1056, 1956, 2277, 2464, 2497, 2698
BstSFI CTRYAG 6 cut(s) 380, 918, 1065, 2013, 2237, 2433
BstSLI GKGCMC 1 cut(s) 2491
BstUI CGCG 2 cut(s) 38, 937
BstV2I GAAGAC 3 cut(s) 266, 1113, 2853
BstX2I RGATCY 5 cut(s) 560, 899, 2644, 2714, 2780
BstXI CCANNNNNNTGG 2 cut(s) 2113, 2966
BstYI RGATCY 5 cut(s) 560, 899, 2644, 2714, 2780
Bsu36I CCTNAGG 1 cut(s) 2804
BsuI GTATCC 2 cut(s) 2820, 3041
BsuRI GGCC 5 cut(s) 826, 1056, 1921, 2489, 2958
BtgI CCRYGG 1 cut(s) 2604
BtgZI GCGATG 2 cut(s) 1092, 2073
BtsI GCAGTG 2 cut(s) 310, 1311
BtsIMutI CAGTG 6 cut(s) 144, 279, 310, 1145, 1311, 2540
BveI ACCTGC 1 cut(s) 1273
Cac8I GCNNGC 4 cut(s) 166, 574, 1125, 2890
CaiI CAGNNNCTG 3 cut(s) 379, 446, 827
CciI TCATGA 2 cut(s) 664, 1351
CfoI GCGC 1 cut(s) 38
Cfr13I GGNCC 6 cut(s) 824, 1510, 1681, 2487, 2488, 2943
DraI TTTAAA 1 cut(s) 420
DriI GACNNNNNGTC 1 cut(s) 2542
EaeI YGGCCR 2 cut(s) 1054, 2956
Eam1104I CTCTTC 3 cut(s) 915, 1909, 2422
Eam1105I GACNNNNNGTC 1 cut(s) 2542
EarI CTCTTC 3 cut(s) 915, 1909, 2422
Ecl136II GAGCTC 2 cut(s) 2141, 3013
Eco130I CCWWGG 3 cut(s) 1272, 1513, 2290
Eco147I AGGCCT 1 cut(s) 1921
Eco24I GRGCYC 4 cut(s) 2143, 2449, 2491, 3015
Eco31I GGTCTC 1 cut(s) 1758
Eco47I GGWCC 3 cut(s) 1510, 1681, 2943
Eco53kI GAGCTC 2 cut(s) 2141, 3013
Eco57I CTGAAG 3 cut(s) 303, 1464, 2747
Eco81I CCTNAGG 1 cut(s) 2804
Eco88I CYCGRG 1 cut(s) 1506
Eco91I GGTNACC 1 cut(s) 1877
EcoICRI GAGCTC 2 cut(s) 2141, 3013
EcoO109I RGGNCCY 4 cut(s) 824, 1681, 2487, 2488
EcoO65I GGTNACC 1 cut(s) 1877
EcoRII CCWGG 4 cut(s) 1056, 1956, 2277, 2698
EcoT14I CCWWGG 3 cut(s) 1272, 1513, 2290
EcoT38I GRGCYC 4 cut(s) 2143, 2449, 2491, 3015
ErhI CCWWGG 3 cut(s) 1272, 1513, 2290
FalI AAGNNNNNCTT 6 cut(s) 1888, 1920, 2179, 2211, 2673, 2705
FaqI GGGAC 2 cut(s) 1523, 1844
FbaI TGATCA 2 cut(s) 7, 1444
FblI GTMKAC 1 cut(s) 2016
FokI GGATG 9 cut(s) 152, 566, 672, 1255, 1661, 2087, 2837, 2978, 3103
FriOI GRGCYC 4 cut(s) 2143, 2449, 2491, 3015
GlaI GCGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 2157
HaeIII GGCC 5 cut(s) 826, 1056, 1921, 2489, 2958
HapII CCGG 3 cut(s) 1862, 2465, 2498
HhaI GCGC 1 cut(s) 38
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HincII GTYRAC 1 cut(s) 1095
HindII GTYRAC 1 cut(s) 1095
HindIII AAGCTT 3 cut(s) 1221, 1393, 2426
HpaII CCGG 3 cut(s) 1862, 2465, 2498
HphI GGTGA 2 cut(s) 1997, 2129
Hpy166II GTNNAC 5 cut(s) 334, 1095, 1136, 1262, 2017
Hpy8I GTNNAC 5 cut(s) 334, 1095, 1136, 1262, 2017
HpyAV CCTTC 8 cut(s) 130, 278, 406, 2158, 2373, 2422, 2736, 2794
HpyCH4III ACNGT 9 cut(s) 797, 1012, 1024, 1112, 2133, 2241, 2544, 2733, 2916
HpyF10VI GCNNNNNNNGC 7 cut(s) 382, 818, 914, 1927, 2657, 2686, 2773
HspAI GCGC 1 cut(s) 36
KpnI GGTACC 1 cut(s) 585
Ksp22I TGATCA 2 cut(s) 7, 1444
LguI GCTCTTC 2 cut(s) 915, 1909
LmnI GCTCC 6 cut(s) 1406, 1927, 2138, 2464, 2524, 3018
LweI GCATC 6 cut(s) 1069, 1277, 1978, 2743, 2763, 3081
MaeIII GTNAC 8 cut(s) 596, 1518, 1576, 1608, 1735, 1877, 2268, 2990
MfeI CAATTG 1 cut(s) 65
MflI RGATCY 5 cut(s) 560, 899, 2644, 2714, 2780
MhlI GDGCHC 4 cut(s) 2143, 2449, 2491, 3015
MlsI TGGCCA 2 cut(s) 1056, 2958
MluI ACGCGT 1 cut(s) 935
MluNI TGGCCA 2 cut(s) 1056, 2958
MlyI GAGTC 4 cut(s) 1616, 1668, 1702, 2531
MmeI TCCRAC 5 cut(s) 637, 1176, 1617, 2742, 2947
Mox20I TGGCCA 2 cut(s) 1056, 2958
MroXI GAANNNNTTC 2 cut(s) 516, 2860
MscI TGGCCA 2 cut(s) 1056, 2958
MslI CAYNNNNRTG 7 cut(s) 1077, 1170, 1172, 1356, 1452, 2841, 2964
Msp20I TGGCCA 2 cut(s) 1056, 2958
MspA1I CMGCKG 3 cut(s) 446, 754, 917
MspI CCGG 3 cut(s) 1862, 2465, 2498
MspR9I CCNGG 6 cut(s) 1058, 1958, 2279, 2466, 2499, 2700
MunI CAATTG 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 1930
MvaI CCWGG 4 cut(s) 1058, 1958, 2279, 2700
MvnI CGCG 2 cut(s) 38, 937
MwoI GCNNNNNNNGC 7 cut(s) 382, 818, 914, 1927, 2657, 2686, 2773
NciI CCSGG 2 cut(s) 2466, 2499
NmuCI GTSAC 3 cut(s) 596, 1608, 2268
NspI RCATGY 2 cut(s) 168, 480
OliI CACNNNNGTG 1 cut(s) 1170
PaeI GCATGC 1 cut(s) 168
PagI TCATGA 2 cut(s) 664, 1351
PaqCI CACCTGC 1 cut(s) 1273
PceI AGGCCT 1 cut(s) 1921
PciI ACATGT 1 cut(s) 476
PciSI GCTCTTC 2 cut(s) 915, 1909
PctI GAATGC 1 cut(s) 1930
PdmI GAANNNNTTC 2 cut(s) 516, 2860
PflMI CCANNNNNTGG 2 cut(s) 121, 2160
PleI GAGTC 4 cut(s) 1615, 1668, 1701, 2531
PpsI GAGTC 4 cut(s) 1615, 1668, 1701, 2531
PpuMI RGGWCCY 1 cut(s) 1681
PscI ACATGT 1 cut(s) 476
Psp124BI GAGCTC 2 cut(s) 2143, 3015
Psp5II RGGWCCY 1 cut(s) 1681
Psp6I CCWGG 4 cut(s) 1056, 1956, 2277, 2698
PspEI GGTNACC 1 cut(s) 1877
PspGI CCWGG 4 cut(s) 1056, 1956, 2277, 2698
PspOMI GGGCCC 1 cut(s) 2487
PspPI GGNCC 6 cut(s) 824, 1510, 1681, 2487, 2488, 2943
PspPPI RGGWCCY 1 cut(s) 1681
PsrI GAACNNNNNNTAC 6 cut(s) 317, 349, 790, 822, 925, 957
PstI CTGCAG 3 cut(s) 384, 922, 2437
PstNI CAGNNNCTG 3 cut(s) 379, 446, 827
PsuI RGATCY 5 cut(s) 560, 899, 2644, 2714, 2780
PvuII CAGCTG 2 cut(s) 446, 917
RseI CAYNNNNRTG 7 cut(s) 1077, 1170, 1172, 1356, 1452, 2841, 2964
SacI GAGCTC 2 cut(s) 2143, 3015
SapI GCTCTTC 2 cut(s) 915, 1909
Sau96I GGNCC 6 cut(s) 824, 1510, 1681, 2487, 2488, 2943
ScaI AGTACT 1 cut(s) 2371
SchI GAGTC 4 cut(s) 1616, 1668, 1702, 2531
ScrFI CCNGG 6 cut(s) 1058, 1958, 2279, 2466, 2499, 2700
SduI GDGCHC 4 cut(s) 2143, 2449, 2491, 3015
SfaNI GCATC 6 cut(s) 1069, 1277, 1978, 2743, 2763, 3081
SfcI CTRYAG 6 cut(s) 380, 918, 1065, 2013, 2237, 2433
SinI GGWCC 3 cut(s) 1510, 1681, 2943
SmiMI CAYNNNNRTG 7 cut(s) 1077, 1170, 1172, 1356, 1452, 2841, 2964
SmlI CTYRAG 2 cut(s) 1676, 2511
SmoI CTYRAG 2 cut(s) 1676, 2511
SphI GCATGC 1 cut(s) 168
SseBI AGGCCT 1 cut(s) 1921
SspI AATATT 4 cut(s) 395, 1529, 2047, 2614
SstI GAGCTC 2 cut(s) 2143, 3015
StuI AGGCCT 1 cut(s) 1921
StyD4I CCNGG 6 cut(s) 1056, 1956, 2277, 2464, 2497, 2698
StyI CCWWGG 3 cut(s) 1272, 1513, 2290
TaaI ACNGT 9 cut(s) 797, 1012, 1024, 1112, 2133, 2241, 2544, 2733, 2916
TaqI TCGA 4 cut(s) 1850, 1972, 2320, 2864
TaqII GACCGA 1 cut(s) 2931
TatI WGTACW 4 cut(s) 535, 718, 1651, 2369
TauI GCSGC 2 cut(s) 757, 1388
TscAI CASTG 6 cut(s) 151, 286, 310, 1152, 1318, 2547
TseFI GTSAC 3 cut(s) 596, 1608, 2268
Tsp45I GTSAC 3 cut(s) 596, 1608, 2268
TspDTI ATGAA 9 cut(s) 381, 702, 1119, 1233, 1368, 1392, 1923, 1965, 3087
TspGWI ACGGA 2 cut(s) 337, 1746
TspRI CASTG 6 cut(s) 151, 286, 310, 1152, 1318, 2547
Van91I CCANNNNNTGG 2 cut(s) 121, 2160
VpaK11BI GGWCC 3 cut(s) 1510, 1681, 2943
XapI RAATTY 4 cut(s) 946, 1432, 1888, 2098
XbaI TCTAGA 1 cut(s) 2216
XceI RCATGY 2 cut(s) 168, 480
XmiI GTMKAC 1 cut(s) 2016
XmnI GAANNNNTTC 2 cut(s) 516, 2860
ZrmI AGTACT 1 cut(s) 2371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.