Prupe.6G032200_v2.0.a1

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016606
Physical Location & Seq
Reverse (-)
2476497 .. 2477224
728 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G032200.1

Sequence Viewer

Length: 444 bp
ATGTTTGCAACCCTCTCCCTCTCTGCCTCAAACCCTCTCTCTTTCACCTCTCTTCCCAAAATGCCCCTGCCTCGCCAGCGCCACCAGCTCAGGGTCTCCGCGGCTGGGGCTTTCACCGAGACCAGGCCGCGGTCCAAAGCCTCAACGAGTCTCTACGAGGTCCTCCGAGTCAACGACAACGCTTCTCAGACGGAGATCAAGTCGGCGTACCGGAGCTTGGCCAAGCTCTACCATCCCGACGCCTCGCCATCGGAATCGGACGGCCGAGATTTCATCGAGATTCACAACGCCTACGCCACGCTGTCCGATCCGGCGGCCAGGGCCATGTACGACCTGTCGTTGAGTGCTCATCTTCAGCATCGTGTTCGTCGGAGAAGCTCGGTCGGGTTTCGACCAGATGGGTTTTATCCGACCCGGAGGTGGGAAACGGACCAGTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

148

Amino Acids

16.65

Weight (kDa)

9.83

Isoelectric Point (pI)

76.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016606)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13310
fragaria_vesca FvH4_3g41970
malus_domestica MD03G1040000.v1.1 MD11G1041400.v1.1
prunus_persica Prupe.6G032200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075161
rosa_laevigata RLG00000036536
rosa_multiflora Rmu_sc0008066.1_g000010
rosa_roxburghii Rroxscaffold_1G00006440
rosa_rugosa Rorug05G0437100
rosa_samantha Rh5BG515400 Rh5CG539200 Rh5DG528100
rosa_wichuraiana Rw5G045840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 101, 130
AciI CCGC 5 cut(s) 99, 101, 128, 130, 314
AclWI GGATC 1 cut(s) 302
AcoI YGGCCR 3 cut(s) 219, 262, 315
AcuI CTGAAG 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 2 cut(s) 209, 329
AfiI CCNNNNNNNGG 7 cut(s) 91, 105, 123, 129, 217, 420, 421
AjnI CCWGG 2 cut(s) 122, 317
AluBI AGCT 4 cut(s) 88, 216, 226, 378
AluI AGCT 4 cut(s) 88, 216, 226, 378
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 3 cut(s) 100, 113, 155
AlwI GGATC 1 cut(s) 302
AoxI GGCC 5 cut(s) 125, 219, 262, 315, 321
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 4 cut(s) 132, 160, 321, 430
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 2 cut(s) 37, 106
AvaII GGWCC 3 cut(s) 132, 160, 430
BalI TGGCCA 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 349
BccI CCATC 3 cut(s) 240, 256, 392
BceAI ACGGC 1 cut(s) 277
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BciT130I CCWGG 2 cut(s) 124, 319
BcnI CCSGG 1 cut(s) 415
BcoDI GTCTC 3 cut(s) 100, 113, 155
BfoI RGCGCY 1 cut(s) 82
BisI GCNGC 3 cut(s) 102, 128, 315
BlsI GCNGC 3 cut(s) 103, 129, 316
Bme1390I CCNGG 3 cut(s) 124, 319, 415
Bme18I GGWCC 3 cut(s) 132, 160, 430
BmgT120I GGNCC 4 cut(s) 132, 160, 321, 430
BmrFI CCNGG 3 cut(s) 124, 319, 415
BmsI GCATC 1 cut(s) 367
Bpu10I CCTNAGC 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 415
BsaHI GRCGYC 1 cut(s) 240
BsaI GGTCTC 2 cut(s) 100, 113
BsaJI CCNNGG 3 cut(s) 99, 128, 318
BsaWI WCCGGW 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 7 cut(s) 91, 105, 123, 129, 217, 420, 421
Bse1I ACTGG 1 cut(s) 433
BseBI CCWGG 2 cut(s) 124, 319
BseDI CCNNGG 3 cut(s) 99, 128, 318
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 7 cut(s) 91, 105, 123, 129, 217, 420, 421
BseMII CTCAG 2 cut(s) 103, 200
BseNI ACTGG 1 cut(s) 433
BseX3I CGGCCG 1 cut(s) 262
BseYI CCCAGC 1 cut(s) 104
Bsh1236I CGCG 2 cut(s) 101, 130
Bsh1285I CGRYCG 2 cut(s) 265, 384
BshFI GGCC 5 cut(s) 127, 221, 264, 317, 323
BsiEI CGRYCG 2 cut(s) 265, 384
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 3 cut(s) 211, 311, 415
BslI CCNNNNNNNGG 7 cut(s) 91, 105, 123, 129, 217, 420, 421
BsmAI GTCTC 3 cut(s) 100, 113, 155
BsnI GGCC 5 cut(s) 127, 221, 264, 317, 323
Bso31I GGTCTC 2 cut(s) 100, 113
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 2 cut(s) 195, 307
BspACI CCGC 5 cut(s) 99, 101, 128, 130, 314
BspANI GGCC 5 cut(s) 127, 221, 264, 317, 323
BspCNI CTCAG 2 cut(s) 102, 199
BspFNI CGCG 2 cut(s) 101, 130
BspPI GGATC 1 cut(s) 302
BspTNI GGTCTC 2 cut(s) 100, 113
BsrI ACTGG 1 cut(s) 433
BssECI CCNNGG 3 cut(s) 99, 128, 318
BssMI GATC 2 cut(s) 195, 307
BssNI GRCGYC 1 cut(s) 240
Bst2UI CCWGG 2 cut(s) 124, 319
Bst6I CTCTTC 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 2 cut(s) 89, 186
BstDSI CCRYGG 2 cut(s) 99, 128
BstF5I GGATG 1 cut(s) 232
BstFNI CGCG 2 cut(s) 101, 130
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 2 cut(s) 198, 310
BstMAI GTCTC 3 cut(s) 100, 113, 155
BstMBI GATC 2 cut(s) 195, 307
BstMCI CGRYCG 2 cut(s) 265, 384
BstMWI GCNNNNNNNGC 4 cut(s) 76, 85, 107, 320
BstNI CCWGG 2 cut(s) 124, 319
BstSCI CCNGG 3 cut(s) 122, 317, 413
BstUI CGCG 2 cut(s) 101, 130
BstZI CGGCCG 1 cut(s) 262
BsuRI GGCC 5 cut(s) 127, 221, 264, 317, 323
BtgI CCRYGG 2 cut(s) 99, 128
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 440
Cac8I GCNNGC 1 cut(s) 77
CfoI GCGC 1 cut(s) 81
Cfr13I GGNCC 4 cut(s) 132, 160, 321, 430
Cfr42I CCGCGG 2 cut(s) 102, 131
CseI GACGC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 208, 328
CviAII CATG 1 cut(s) 325
CviQI GTAC 2 cut(s) 208, 328
DdeI CTNAG 2 cut(s) 89, 186
DpnI GATC 2 cut(s) 197, 309
DpnII GATC 2 cut(s) 195, 307
EaeI YGGCCR 3 cut(s) 219, 262, 315
EagI CGGCCG 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EclXI CGGCCG 1 cut(s) 262
Eco31I GGTCTC 2 cut(s) 100, 113
Eco47I GGWCC 3 cut(s) 132, 160, 430
Eco52I CGGCCG 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 338
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 122, 317
FaeI CATG 1 cut(s) 328
FaiI YATR 1 cut(s) 326
FatI CATG 1 cut(s) 324
Fnu4HI GCNGC 3 cut(s) 102, 128, 315
FokI GGATG 1 cut(s) 219
Fsp4HI GCNGC 3 cut(s) 102, 128, 315
GlaI GCGC 1 cut(s) 80
GluI GCNGC 3 cut(s) 102, 128, 315
GsaI CCCAGC 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 5 cut(s) 127, 221, 264, 317, 323
HapII CCGG 3 cut(s) 211, 311, 415
HgaI GACGC 1 cut(s) 248
HhaI GCGC 1 cut(s) 81
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 1 cut(s) 328
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 4 cut(s) 148, 168, 254, 280
HpaII CCGG 3 cut(s) 211, 311, 415
HphI GGTGA 2 cut(s) 37, 106
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 7 cut(s) 167, 189, 253, 259, 307, 372, 411
Hpy188III TCNNGA 2 cut(s) 236, 277
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 2 cut(s) 242, 372
HpyCH4V TGCA 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 85, 107, 320
HpyF3I CTNAG 2 cut(s) 89, 186
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 1 cut(s) 328
HspAI GCGC 1 cut(s) 79
KspI CCGCGG 2 cut(s) 102, 131
Kzo9I GATC 2 cut(s) 195, 307
LmnI GCTCC 1 cut(s) 213
LweI GCATC 1 cut(s) 367
MalI GATC 2 cut(s) 197, 309
MboI GATC 2 cut(s) 195, 307
MboII GAAGA 2 cut(s) 44, 344
MhlI GDGCHC 1 cut(s) 349
MlsI TGGCCA 1 cut(s) 221
MluNI TGGCCA 1 cut(s) 221
MlyI GAGTC 2 cut(s) 157, 177
MmeI TCCRAC 2 cut(s) 350, 434
Mox20I TGGCCA 1 cut(s) 221
MscI TGGCCA 1 cut(s) 221
Msp20I TGGCCA 1 cut(s) 221
MspA1I CMGCKG 2 cut(s) 101, 130
MspI CCGG 3 cut(s) 211, 311, 415
MspR9I CCNGG 3 cut(s) 124, 319, 415
MvaI CCWGG 2 cut(s) 124, 319
MvnI CGCG 2 cut(s) 101, 130
MwoI GCNNNNNNNGC 4 cut(s) 76, 85, 107, 320
NciI CCSGG 1 cut(s) 415
NdeII GATC 2 cut(s) 195, 307
NlaIII CATG 1 cut(s) 328
NmeAIII GCCGAG 1 cut(s) 290
PfeI GAWTC 2 cut(s) 254, 280
PkrI GCNGC 3 cut(s) 103, 129, 316
PleI GAGTC 2 cut(s) 156, 176
PpsI GAGTC 2 cut(s) 156, 176
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 2 cut(s) 122, 317
PspFI CCCAGC 1 cut(s) 104
PspGI CCWGG 2 cut(s) 122, 317
PspPI GGNCC 4 cut(s) 132, 160, 321, 430
PspPPI RGGWCCY 1 cut(s) 160
RsaI GTAC 2 cut(s) 209, 329
RsaNI GTAC 2 cut(s) 208, 328
SacII CCGCGG 2 cut(s) 102, 131
SatI GCNGC 3 cut(s) 102, 128, 315
Sau3AI GATC 2 cut(s) 195, 307
Sau96I GGNCC 4 cut(s) 132, 160, 321, 430
SchI GAGTC 2 cut(s) 157, 177
ScrFI CCNGG 3 cut(s) 124, 319, 415
SduI GDGCHC 1 cut(s) 349
SetI ASST 8 cut(s) 50, 90, 162, 218, 228, 336, 380, 422
SfaNI GCATC 1 cut(s) 367
Sfr303I CCGCGG 2 cut(s) 102, 131
SgrBI CCGCGG 2 cut(s) 102, 131
SinI GGWCC 3 cut(s) 132, 160, 430
SsiI CCGC 5 cut(s) 99, 101, 128, 130, 314
StyD4I CCNGG 3 cut(s) 122, 317, 413
TaqI TCGA 2 cut(s) 276, 391
TaqII GACCGA 1 cut(s) 370
TauI GCSGC 3 cut(s) 104, 130, 317
TfiI GAWTC 2 cut(s) 254, 280
TscAI CASTG 1 cut(s) 440
TspDTI ATGAA 1 cut(s) 262
TspGWI ACGGA 2 cut(s) 206, 443
TspRI CASTG 1 cut(s) 440
VpaK11BI GGWCC 3 cut(s) 132, 160, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.