RchiOBHm_Chr5g0075161

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016606
Physical Location & Seq
Forward (+)
80985998 .. 80986760
763 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34990

Sequence Viewer

Length: 462 bp
ATGTCTGCAACCCTAGCCCTCTCCGGCCTCTCCTTCTCCGCCGCGGCGAACCACAAGCTCTCCTCCGCCGCTTTTACCGACATGCCCCTGCCTCGCCGGCAGCTGAAGGTCTCCGTGAGGGCGTTCGCCGAGACGGAGCGGCGGCCGGCGACGGCGGATCCGGCGAGCCTGTACGAGGTTCTGCAGGTGAAGAACAACGCGTCGCAGACGGAGATCAAGTCGGCGTACAGGAGCTTGGCGAAGCTGCACCACCCGGACGCGTCGTTGGAGGCCGAATCGGACGGCCGGGATTTCATCGAGATTCACAACGCGTACGCCACGCTGTCGGATCCGGCGGCCAGGGCGATGTATGATCTGTCGCTGAGTGCTCATGTTCATTGTGATAGCCGGAGAAGCGCGGTCGGGTTTCGGCCCAATGGGTTTTATTCGACCCGGAGGTGGGAAACGGACCAGTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

153

Amino Acids

16.93

Weight (kDa)

7.86

Isoelectric Point (pI)

68.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 57 - 118 1.2e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016606)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13310
fragaria_vesca FvH4_3g41970
malus_domestica MD03G1040000.v1.1 MD11G1041400.v1.1
prunus_persica Prupe.6G032200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075161
rosa_laevigata RLG00000036536
rosa_multiflora Rmu_sc0008066.1_g000010
rosa_roxburghii Rroxscaffold_1G00006440
rosa_rugosa Rorug05G0437100
rosa_samantha Rh5BG515400 Rh5CG539200 Rh5DG528100
rosa_wichuraiana Rw5G045840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 175
Acc36I ACCTGC 1 cut(s) 175
AccBSI CCGCTC 1 cut(s) 139
AccII CGCG 5 cut(s) 44, 200, 260, 311, 398
AclWI GGATC 4 cut(s) 152, 165, 323, 336
AcoI YGGCCR 3 cut(s) 143, 283, 336
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 3 cut(s) 173, 227, 314
AfiI CCNNNNNNNGG 3 cut(s) 175, 438, 439
AflIII ACRYGT 3 cut(s) 198, 258, 309
AjnI CCWGG 1 cut(s) 338
AluBI AGCT 4 cut(s) 58, 103, 234, 244
AluI AGCT 4 cut(s) 58, 103, 234, 244
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 2 cut(s) 115, 125
AlwI GGATC 4 cut(s) 152, 165, 323, 336
AoxI GGCC 6 cut(s) 25, 143, 270, 283, 336, 410
ApeKI GCWGC 2 cut(s) 100, 244
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 2 cut(s) 411, 448
AsuC2I CCSGG 3 cut(s) 254, 287, 433
AsuHPI GGTGA 1 cut(s) 199
AvaII GGWCC 1 cut(s) 448
BamHI GGATCC 2 cut(s) 157, 328
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 112, 231
BceAI ACGGC 2 cut(s) 168, 298
BciT130I CCWGG 1 cut(s) 340
BcnI CCSGG 3 cut(s) 254, 287, 433
BcoDI GTCTC 2 cut(s) 115, 125
BfaI CTAG 1 cut(s) 14
BfmI CTRYAG 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 175
BglI GCCNNNNNGGC 1 cut(s) 97
BisI GCNGC 8 cut(s) 42, 45, 69, 101, 140, 143, 245, 336
BlsI GCNGC 8 cut(s) 43, 46, 70, 102, 141, 144, 246, 337
Bme1390I CCNGG 4 cut(s) 254, 287, 340, 433
Bme18I GGWCC 1 cut(s) 448
BmgT120I GGNCC 2 cut(s) 411, 448
BmiI GGNNCC 2 cut(s) 159, 330
BmrFI CCNGG 4 cut(s) 254, 287, 340, 433
BpuMI CCSGG 3 cut(s) 254, 287, 433
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 42, 339
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 203, 233
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 438, 439
Bse118I RCCGGY 2 cut(s) 96, 145
Bse1I ACTGG 1 cut(s) 451
BseBI CCWGG 1 cut(s) 340
BseDI CCNNGG 2 cut(s) 42, 339
BseLI CCNNNNNNNGG 3 cut(s) 175, 438, 439
BseMII CTCAG 1 cut(s) 353
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 1 cut(s) 52
BseX3I CGGCCG 2 cut(s) 143, 283
BseXI GCAGC 2 cut(s) 112, 231
BsgI GTGCAG 1 cut(s) 230
Bsh1236I CGCG 5 cut(s) 44, 200, 260, 311, 398
Bsh1285I CGRYCG 3 cut(s) 146, 286, 402
BshFI GGCC 6 cut(s) 27, 145, 272, 285, 338, 412
BsiEI CGRYCG 3 cut(s) 146, 286, 402
BsiHKAI GWGCWC 1 cut(s) 370
BsiSI CCGG 9 cut(s) 24, 97, 146, 161, 254, 286, 332, 388, 433
BsiWI CGTACG 1 cut(s) 312
BslI CCNNNNNNNGG 3 cut(s) 175, 438, 439
BsmAI GTCTC 2 cut(s) 115, 125
BsmBI CGTCTC 1 cut(s) 125
BsnI GGCC 6 cut(s) 27, 145, 272, 285, 338, 412
Bso31I GGTCTC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 4 cut(s) 157, 213, 328, 352
BspANI GGCC 6 cut(s) 27, 145, 272, 285, 338, 412
BspCNI CTCAG 1 cut(s) 354
BspFNI CGCG 5 cut(s) 44, 200, 260, 311, 398
BspLI GGNNCC 2 cut(s) 159, 330
BspMAI CTGCAG 1 cut(s) 186
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 4 cut(s) 152, 165, 323, 336
BspTNI GGTCTC 1 cut(s) 115
BsrBI CCGCTC 1 cut(s) 139
BsrFI RCCGGY 2 cut(s) 96, 145
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 2 cut(s) 96, 145
BssECI CCNNGG 2 cut(s) 42, 339
BssMI GATC 4 cut(s) 157, 213, 328, 352
Bst2UI CCWGG 1 cut(s) 340
BstC8I GCNNGC 3 cut(s) 98, 147, 166
BstDEI CTNAG 1 cut(s) 362
BstDSI CCRYGG 1 cut(s) 42
BstENI CCTNNNNNAGG 1 cut(s) 173
BstFNI CGCG 5 cut(s) 44, 200, 260, 311, 398
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 4 cut(s) 160, 216, 331, 355
BstMAI GTCTC 2 cut(s) 115, 125
BstMBI GATC 4 cut(s) 157, 213, 328, 352
BstMCI CGRYCG 3 cut(s) 146, 286, 402
BstMWI GCNNNNNNNGC 5 cut(s) 14, 97, 161, 341, 393
BstNI CCWGG 1 cut(s) 340
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 4 cut(s) 252, 285, 338, 431
BstSFI CTRYAG 1 cut(s) 182
BstUI CGCG 5 cut(s) 44, 200, 260, 311, 398
BstV1I GCAGC 2 cut(s) 112, 231
BstX2I RGATCY 2 cut(s) 157, 328
BstYI RGATCY 2 cut(s) 157, 328
BstZI CGGCCG 2 cut(s) 143, 283
BsuRI GGCC 6 cut(s) 27, 145, 272, 285, 338, 412
BtgI CCRYGG 1 cut(s) 42
BtgZI GCGATG 1 cut(s) 359
BtsIMutI CAGTG 1 cut(s) 458
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 3 cut(s) 98, 147, 166
CfoI GCGC 1 cut(s) 398
Cfr10I RCCGGY 2 cut(s) 96, 145
Cfr13I GGNCC 2 cut(s) 411, 448
Cfr42I CCGCGG 1 cut(s) 45
CseI GACGC 3 cut(s) 189, 249, 266
Csp6I GTAC 3 cut(s) 172, 226, 313
CviAII CATG 2 cut(s) 82, 371
CviQI GTAC 3 cut(s) 172, 226, 313
DdeI CTNAG 1 cut(s) 362
DpnI GATC 4 cut(s) 159, 215, 330, 354
DpnII GATC 4 cut(s) 157, 213, 328, 352
EaeI YGGCCR 3 cut(s) 143, 283, 336
EagI CGGCCG 2 cut(s) 143, 283
EciI GGCGGA 3 cut(s) 28, 55, 170
EclXI CGGCCG 2 cut(s) 143, 283
Eco31I GGTCTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 448
Eco52I CGGCCG 2 cut(s) 143, 283
Eco57I CTGAAG 1 cut(s) 125
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 338
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 2 cut(s) 85, 374
FaiI YATR 3 cut(s) 83, 351, 372
FatI CATG 2 cut(s) 81, 370
Fnu4HI GCNGC 8 cut(s) 42, 45, 69, 101, 140, 143, 245, 336
Fsp4HI GCNGC 8 cut(s) 42, 45, 69, 101, 140, 143, 245, 336
FspBI CTAG 1 cut(s) 14
GlaI GCGC 1 cut(s) 397
GluI GCNGC 8 cut(s) 42, 45, 69, 101, 140, 143, 245, 336
HaeIII GGCC 6 cut(s) 27, 145, 272, 285, 338, 412
HapII CCGG 9 cut(s) 24, 97, 146, 161, 254, 286, 332, 388, 433
HgaI GACGC 3 cut(s) 189, 249, 266
HhaI GCGC 1 cut(s) 398
Hin1II CATG 2 cut(s) 85, 374
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HinfI GANTC 2 cut(s) 275, 301
HpaII CCGG 9 cut(s) 24, 97, 146, 161, 254, 286, 332, 388, 433
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 280, 328
Hpy188III TCNNGA 1 cut(s) 298
Hpy99I CGWCG 3 cut(s) 154, 205, 265
HpyAV CCTTC 2 cut(s) 43, 100
HpyCH4V TGCA 3 cut(s) 8, 184, 247
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 97, 161, 341, 393
HpyF3I CTNAG 1 cut(s) 362
Hsp92II CATG 2 cut(s) 85, 374
HspAI GCGC 1 cut(s) 396
KroI GCCGGC 2 cut(s) 96, 145
KroNI GCCGGC 2 cut(s) 98, 147
KspI CCGCGG 1 cut(s) 45
Kzo9I GATC 4 cut(s) 157, 213, 328, 352
LmnI GCTCC 2 cut(s) 136, 231
Lsp1109I GCAGC 2 cut(s) 112, 231
MaeI CTAG 1 cut(s) 14
MalI GATC 4 cut(s) 159, 215, 330, 354
MbiI CCGCTC 1 cut(s) 139
MboI GATC 4 cut(s) 157, 213, 328, 352
MboII GAAGA 1 cut(s) 202
MflI RGATCY 2 cut(s) 157, 328
MhlI GDGCHC 1 cut(s) 370
MluI ACGCGT 3 cut(s) 198, 258, 309
MmeI TCCRAC 2 cut(s) 246, 306
MnlI CCTC 8 cut(s) 29, 38, 73, 102, 111, 169, 262, 429
MroNI GCCGGC 2 cut(s) 96, 145
MspA1I CMGCKG 2 cut(s) 44, 103
MspI CCGG 9 cut(s) 24, 97, 146, 161, 254, 286, 332, 388, 433
MspR9I CCNGG 4 cut(s) 254, 287, 340, 433
MvaI CCWGG 1 cut(s) 340
MvnI CGCG 5 cut(s) 44, 200, 260, 311, 398
MwoI GCNNNNNNNGC 5 cut(s) 14, 97, 161, 341, 393
NaeI GCCGGC 2 cut(s) 98, 147
NciI CCSGG 3 cut(s) 254, 287, 433
NdeII GATC 4 cut(s) 157, 213, 328, 352
NgoMIV GCCGGC 2 cut(s) 96, 145
NlaIII CATG 2 cut(s) 85, 374
NlaIV GGNNCC 2 cut(s) 159, 330
NmeAIII GCCGAG 1 cut(s) 154
NspI RCATGY 1 cut(s) 85
PaqCI CACCTGC 1 cut(s) 175
PdiI GCCGGC 2 cut(s) 98, 147
PfeI GAWTC 2 cut(s) 275, 301
Pfl23II CGTACG 1 cut(s) 312
PkrI GCNGC 8 cut(s) 43, 46, 70, 102, 141, 144, 246, 337
Psp6I CCWGG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 338
PspLI CGTACG 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 159, 330
PspPI GGNCC 2 cut(s) 411, 448
PstI CTGCAG 1 cut(s) 186
PsuI RGATCY 2 cut(s) 157, 328
PvuII CAGCTG 1 cut(s) 103
RsaI GTAC 3 cut(s) 173, 227, 314
RsaNI GTAC 3 cut(s) 172, 226, 313
SacII CCGCGG 1 cut(s) 45
SatI GCNGC 8 cut(s) 42, 45, 69, 101, 140, 143, 245, 336
Sau3AI GATC 4 cut(s) 157, 213, 328, 352
Sau96I GGNCC 2 cut(s) 411, 448
ScrFI CCNGG 4 cut(s) 254, 287, 340, 433
SduI GDGCHC 1 cut(s) 370
SetI ASST 8 cut(s) 60, 105, 111, 180, 189, 236, 246, 440
SfcI CTRYAG 1 cut(s) 182
Sfr303I CCGCGG 1 cut(s) 45
SgrBI CCGCGG 1 cut(s) 45
SinI GGWCC 1 cut(s) 448
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 4 cut(s) 252, 285, 338, 431
TaqI TCGA 2 cut(s) 297, 428
TauI GCSGC 6 cut(s) 44, 47, 71, 142, 145, 338
TfiI GAWTC 2 cut(s) 275, 301
TscAI CASTG 1 cut(s) 458
TseI GCWGC 2 cut(s) 100, 244
TspDTI ATGAA 2 cut(s) 283, 365
TspGWI ACGGA 4 cut(s) 103, 149, 224, 461
TspRI CASTG 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 448
XagI CCTNNNNNAGG 1 cut(s) 173
XceI RCATGY 1 cut(s) 85
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.