FvH4_3g41970

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016606
Physical Location & Seq
Forward (+)
35105220 .. 35106080
861 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41970.t1

Sequence Viewer

Length: 456 bp
ATGTCGGCAACCCTAGCCTTCTCCGGCCTCTCCTTCTCCTCCTCCTCCCCCAAGCTCCCCTCCACCTCCCTCCCCCGCCGCCAGCTCAGGGTCTCCGTCAGGGCCTTCGCCGAGACGGAGCGGCGTCCGATGATCGCGTCGCCGACTCCGGCGAGCCTCTACGAGGTTCTAAGGGTGAGGACCAACGCATCGCAGACGGAGATCAAGTCGGCGTACCGGAGCCTGGCGAAGCTGCACCACCCGGACGCGTCGTCGTCGTCGGAAACCGAATCGGACGGCCGGGAGTTCATCGAGATTCACAACGCGTACGCCACGCTGTCGGATCCGGCGGCCAGGGCGATGTACGACCTGTCGCTGAGTGGGCGCGTGGAATTCGATCGCGGGATAAGCGCGGTCGGGTTTAGGCCCAATGGGTTTTATTCGACCCGGAGGTGGGAAACGGACCAGTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

152

Amino Acids

16.8

Weight (kDa)

9.29

Isoelectric Point (pI)

72.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 53 - 116 3.6e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016606)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13310
fragaria_vesca FvH4_3g41970
malus_domestica MD03G1040000.v1.1 MD11G1041400.v1.1
prunus_persica Prupe.6G032200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075161
rosa_laevigata RLG00000036536
rosa_multiflora Rmu_sc0008066.1_g000010
rosa_roxburghii Rroxscaffold_1G00006440
rosa_rugosa Rorug05G0437100
rosa_samantha Rh5BG515400 Rh5CG539200 Rh5DG528100
rosa_wichuraiana Rw5G045840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 121
AccII CGCG 6 cut(s) 137, 248, 305, 366, 381, 392
AciI CCGC 6 cut(s) 76, 79, 121, 329, 381, 392
AclWI GGATC 2 cut(s) 317, 330
AcoI YGGCCR 2 cut(s) 277, 330
AcsI RAATTY 1 cut(s) 371
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 3 cut(s) 215, 308, 344
AfiI CCNNNNNNNGG 5 cut(s) 88, 163, 223, 432, 433
AflIII ACRYGT 2 cut(s) 246, 303
AhdI GACNNNNNGTC 1 cut(s) 250
AjnI CCWGG 2 cut(s) 222, 332
AluBI AGCT 3 cut(s) 55, 85, 232
AluI AGCT 3 cut(s) 55, 85, 232
Alw26I GTCTC 2 cut(s) 97, 107
AlwI GGATC 2 cut(s) 317, 330
AoxI GGCC 5 cut(s) 25, 102, 277, 330, 404
ApeKI GCWGC 1 cut(s) 232
ApoI RAATTY 1 cut(s) 371
AspLEI GCGC 2 cut(s) 366, 392
AspS9I GGNCC 4 cut(s) 102, 180, 405, 442
AsuC2I CCSGG 3 cut(s) 242, 281, 427
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 2 cut(s) 180, 442
BamHI GGATCC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 219
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 2 cut(s) 224, 334
BcnI CCSGG 3 cut(s) 242, 281, 427
BcoDI GTCTC 2 cut(s) 97, 107
BfaI CTAG 1 cut(s) 14
BisI GCNGC 4 cut(s) 79, 122, 233, 330
BlsI GCNGC 4 cut(s) 80, 123, 234, 331
Bme1390I CCNGG 5 cut(s) 224, 242, 281, 334, 427
Bme18I GGWCC 2 cut(s) 180, 442
BmeRI GACNNNNNGTC 1 cut(s) 250
BmgT120I GGNCC 4 cut(s) 102, 180, 405, 442
BmiI GGNNCC 2 cut(s) 221, 324
BmrFI CCNGG 5 cut(s) 224, 242, 281, 334, 427
BmsI GCATC 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 86
BpuMI CCSGG 3 cut(s) 242, 281, 427
BsaHI GRCGYC 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 1 cut(s) 216
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 163, 223, 432, 433
Bse1I ACTGG 1 cut(s) 445
BseBI CCWGG 2 cut(s) 224, 334
BseDI CCNNGG 1 cut(s) 333
BseLI CCNNNNNNNGG 5 cut(s) 88, 163, 223, 432, 433
BseMII CTCAG 2 cut(s) 100, 347
BseNI ACTGG 1 cut(s) 445
BseRI GAGGAG 3 cut(s) 28, 31, 34
BseX3I CGGCCG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 219
BsgI GTGCAG 1 cut(s) 218
Bsh1236I CGCG 6 cut(s) 137, 248, 305, 366, 381, 392
Bsh1285I CGRYCG 3 cut(s) 280, 379, 396
BshFI GGCC 5 cut(s) 27, 104, 279, 332, 406
BsiEI CGRYCG 3 cut(s) 280, 379, 396
BsiSI CCGG 7 cut(s) 24, 149, 217, 242, 280, 326, 427
BsiWI CGTACG 1 cut(s) 306
BslI CCNNNNNNNGG 5 cut(s) 88, 163, 223, 432, 433
BsmAI GTCTC 2 cut(s) 97, 107
BsmBI CGTCTC 1 cut(s) 107
BsnI GGCC 5 cut(s) 27, 104, 279, 332, 406
Bso31I GGTCTC 1 cut(s) 97
Bsp143I GATC 4 cut(s) 132, 201, 322, 376
BspACI CCGC 6 cut(s) 76, 79, 121, 329, 381, 392
BspANI GGCC 5 cut(s) 27, 104, 279, 332, 406
BspCNI CTCAG 2 cut(s) 99, 348
BspFNI CGCG 6 cut(s) 137, 248, 305, 366, 381, 392
BspLI GGNNCC 2 cut(s) 221, 324
BspPI GGATC 2 cut(s) 317, 330
BspTNI GGTCTC 1 cut(s) 97
BsrBI CCGCTC 1 cut(s) 121
BsrI ACTGG 1 cut(s) 445
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 4 cut(s) 132, 201, 322, 376
BssNI GRCGYC 1 cut(s) 124
Bst2UI CCWGG 2 cut(s) 224, 334
BstACI GRCGYC 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 83, 154
BstDEI CTNAG 3 cut(s) 86, 170, 356
BstENI CCTNNNNNAGG 1 cut(s) 161
BstFNI CGCG 6 cut(s) 137, 248, 305, 366, 381, 392
BstHHI GCGC 2 cut(s) 366, 392
BstKTI GATC 4 cut(s) 135, 204, 325, 379
BstMAI GTCTC 2 cut(s) 97, 107
BstMBI GATC 4 cut(s) 132, 201, 322, 376
BstMCI CGRYCG 3 cut(s) 280, 379, 396
BstMWI GCNNNNNNNGC 4 cut(s) 14, 335, 361, 387
BstNI CCWGG 2 cut(s) 224, 334
BstSCI CCNGG 5 cut(s) 222, 240, 279, 332, 425
BstUI CGCG 6 cut(s) 137, 248, 305, 366, 381, 392
BstV1I GCAGC 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BstZI CGGCCG 1 cut(s) 277
BsuRI GGCC 5 cut(s) 27, 104, 279, 332, 406
BtgZI GCGATG 2 cut(s) 174, 353
BtsIMutI CAGTG 1 cut(s) 452
Cac8I GCNNGC 2 cut(s) 83, 154
CfoI GCGC 2 cut(s) 366, 392
Cfr13I GGNCC 4 cut(s) 102, 180, 405, 442
CseI GACGC 4 cut(s) 113, 126, 237, 254
Csp6I GTAC 3 cut(s) 214, 307, 343
CviQI GTAC 3 cut(s) 214, 307, 343
DdeI CTNAG 3 cut(s) 86, 170, 356
DpnI GATC 4 cut(s) 134, 203, 324, 378
DpnII GATC 4 cut(s) 132, 201, 322, 376
DriI GACNNNNNGTC 1 cut(s) 250
EaeI YGGCCR 2 cut(s) 277, 330
EagI CGGCCG 1 cut(s) 277
Eam1105I GACNNNNNGTC 1 cut(s) 250
EclXI CGGCCG 1 cut(s) 277
Eco31I GGTCTC 1 cut(s) 97
Eco47I GGWCC 2 cut(s) 180, 442
Eco52I CGGCCG 1 cut(s) 277
EcoNI CCTNNNNNAGG 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 102
EcoRI GAATTC 1 cut(s) 371
EcoRII CCWGG 2 cut(s) 222, 332
Esp3I CGTCTC 1 cut(s) 107
FauI CCCGC 2 cut(s) 83, 374
Fnu4HI GCNGC 4 cut(s) 79, 122, 233, 330
Fsp4HI GCNGC 4 cut(s) 79, 122, 233, 330
FspBI CTAG 1 cut(s) 14
GlaI GCGC 2 cut(s) 365, 391
GluI GCNGC 4 cut(s) 79, 122, 233, 330
HaeIII GGCC 5 cut(s) 27, 104, 279, 332, 406
HapII CCGG 7 cut(s) 24, 149, 217, 242, 280, 326, 427
HgaI GACGC 4 cut(s) 113, 126, 237, 254
HhaI GCGC 2 cut(s) 366, 392
Hin1I GRCGYC 1 cut(s) 124
Hin6I GCGC 2 cut(s) 364, 390
HinP1I GCGC 2 cut(s) 364, 390
HinfI GANTC 3 cut(s) 145, 269, 295
HpaII CCGG 7 cut(s) 24, 149, 217, 242, 280, 326, 427
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 4 cut(s) 129, 262, 274, 322
Hpy188III TCNNGA 1 cut(s) 292
Hpy99I CGWCG 5 cut(s) 142, 253, 256, 259, 262
HpyAV CCTTC 3 cut(s) 28, 43, 115
HpyCH4V TGCA 1 cut(s) 235
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 335, 361, 387
HpyF3I CTNAG 3 cut(s) 86, 170, 356
Hsp92I GRCGYC 1 cut(s) 124
HspAI GCGC 2 cut(s) 364, 390
Kzo9I GATC 4 cut(s) 132, 201, 322, 376
LmnI GCTCC 3 cut(s) 60, 118, 219
Lsp1109I GCAGC 1 cut(s) 219
LweI GCATC 1 cut(s) 197
MaeI CTAG 1 cut(s) 14
MalI GATC 4 cut(s) 134, 203, 324, 378
MbiI CCGCTC 1 cut(s) 121
MboI GATC 4 cut(s) 132, 201, 322, 376
MflI RGATCY 1 cut(s) 322
MluCI AATT 1 cut(s) 371
MluI ACGCGT 2 cut(s) 246, 303
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 2 cut(s) 240, 300
MspI CCGG 7 cut(s) 24, 149, 217, 242, 280, 326, 427
MspR9I CCNGG 5 cut(s) 224, 242, 281, 334, 427
MvaI CCWGG 2 cut(s) 224, 334
MvnI CGCG 6 cut(s) 137, 248, 305, 366, 381, 392
MwoI GCNNNNNNNGC 4 cut(s) 14, 335, 361, 387
NciI CCSGG 3 cut(s) 242, 281, 427
NdeII GATC 4 cut(s) 132, 201, 322, 376
NlaIV GGNNCC 2 cut(s) 221, 324
NmeAIII GCCGAG 1 cut(s) 136
PfeI GAWTC 2 cut(s) 269, 295
Pfl23II CGTACG 1 cut(s) 306
PkrI GCNGC 4 cut(s) 80, 123, 234, 331
Ple19I CGATCG 1 cut(s) 379
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 222, 332
PspGI CCWGG 2 cut(s) 222, 332
PspLI CGTACG 1 cut(s) 306
PspN4I GGNNCC 2 cut(s) 221, 324
PspPI GGNCC 4 cut(s) 102, 180, 405, 442
PsuI RGATCY 1 cut(s) 322
PvuI CGATCG 1 cut(s) 379
RsaI GTAC 3 cut(s) 215, 308, 344
RsaNI GTAC 3 cut(s) 214, 307, 343
SatI GCNGC 4 cut(s) 79, 122, 233, 330
Sau3AI GATC 4 cut(s) 132, 201, 322, 376
Sau96I GGNCC 4 cut(s) 102, 180, 405, 442
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 5 cut(s) 224, 242, 281, 334, 427
SetI ASST 7 cut(s) 57, 68, 87, 168, 234, 351, 434
SfaNI GCATC 1 cut(s) 197
SinI GGWCC 2 cut(s) 180, 442
Sse9I AATT 1 cut(s) 371
SsiI CCGC 6 cut(s) 76, 79, 121, 329, 381, 392
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 5 cut(s) 222, 240, 279, 332, 425
TaqI TCGA 3 cut(s) 291, 375, 422
TasI AATT 1 cut(s) 371
TauI GCSGC 3 cut(s) 81, 124, 332
TfiI GAWTC 2 cut(s) 269, 295
TscAI CASTG 1 cut(s) 452
TseI GCWGC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 277
TspGWI ACGGA 4 cut(s) 85, 131, 212, 455
TspRI CASTG 1 cut(s) 452
VpaK11BI GGWCC 2 cut(s) 180, 442
XagI CCTNNNNNAGG 1 cut(s) 161
XapI RAATTY 1 cut(s) 371
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.