AT3G13700

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008567
Physical Location & Seq
Reverse (-)
4490628 .. 4493737
3110 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13700.1

Sequence Viewer

Length: 891 bp
ATGGCGTATCACCAACCGTACGATCCTTTCTACGTCTATCAACTTCATTCTCATCCTCATCATCTTCCGCCGCAGCTGCCACTGCTCGCCGACGAACCTGGGGCGATTAACACTCTCTTTGTCTCTGGCTTGCCTAATGACGTTAAGGCTCGTGAGATCCACAATCTCTTCCGTCGTCGTCATGGATTCGAATCTTGTCAGCTCAAGTACACTGGACGCGGTGACCAGGTTTGTAAAAATCTCCAATTTCTGTTTTTTTTTATTCCCATTTTTAGAAAAGCTGTTGTGGCATTTGCAACATTCACGAGTCATAGATTCGCCTTGGCTGCAATGAATGAGCTAAATGGTGTGAAATTTGATCCTCAAACAGGATCAAATCTACATATAGAACTAGCTAGATCAAACTCTAGAAGAAAAGAAAGGCCAGGAAGTGGACCTTATGTTGTGATTGATAACAGAAACAAGGAAATTTCTAAGTCTCAGGATGACCAGAGTGATGAAGGGGATAGCGATCCAGATGAGGTGCAGGAACCTGGAAATAGCGATTCTCCAAAGGAAAACGATACTACCAAAAGCGAAGCGGATTCTGAGCCAGATAGTAAAGCACCATCTGCTAATGGGCACTTAGAGAAAGCATCTGAAGGAGGTTCTGGTGCTCGAGCTTGTTCGACCTTGTTTATAGCTAATCTAGGGCCTAATTGTACAGAAGATGAACTCAAACAACTCCTATCTAGATATCCTGGTTTCCACATTTTAAAAATCCGAGCTAGAGGCGGAATGCCGGTTGCATTTGCTGATTTTGAGGAAATCGAGCAAGCTACTGATGCCATGAATCATCTTCAAGGGAACCTCTTATCCTCTTCAGACCGAGGCGGCATGCATATAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

296

Amino Acids

32.88

Weight (kDa)

5.71

Isoelectric Point (pI)

62.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 225 - 285 7.6e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 431
AccII CGCG 1 cut(s) 219
AciI CCGC 6 cut(s) 68, 71, 219, 581, 774, 873
AclWI GGATC 5 cut(s) 17, 151, 353, 379, 506
AcsI RAATTY 2 cut(s) 353, 468
AcuI CTGAAG 2 cut(s) 660, 846
AfaI GTAC 3 cut(s) 20, 209, 703
AfiI CCNNNNNNNGG 2 cut(s) 368, 431
AgsI TTSAA 1 cut(s) 842
AjnI CCWGG 5 cut(s) 97, 225, 424, 532, 739
AloI GAACNNNNNNTCC 2 cut(s) 839, 871
AluBI AGCT 9 cut(s) 76, 202, 281, 340, 395, 662, 683, 767, 818
AluI AGCT 9 cut(s) 76, 202, 281, 340, 395, 662, 683, 767, 818
Alw21I GWGCWC 1 cut(s) 658
Alw26I GTCTC 2 cut(s) 127, 483
AlwI GGATC 5 cut(s) 17, 151, 353, 379, 506
Ama87I CYCGRG 1 cut(s) 657
AoxI GGCC 2 cut(s) 422, 692
ApeKI GCWGC 3 cut(s) 73, 76, 326
ApoI RAATTY 2 cut(s) 353, 468
AspS9I GGNCC 2 cut(s) 434, 692
AsuHPI GGTGA 1 cut(s) 233
AsuII TTCGAA 1 cut(s) 189
AvaI CYCGRG 1 cut(s) 657
AvaII GGWCC 1 cut(s) 434
BaeGI GKGCMC 1 cut(s) 624
BauI CACGAG 2 cut(s) 150, 304
Bbv12I GWGCWC 1 cut(s) 658
BbvI GCAGC 3 cut(s) 63, 85, 313
BccI CCATC 1 cut(s) 616
BciT130I CCWGG 5 cut(s) 99, 227, 426, 534, 741
BcoDI GTCTC 2 cut(s) 127, 483
BfaI CTAG 6 cut(s) 392, 396, 408, 689, 732, 768
BisI GCNGC 5 cut(s) 71, 74, 77, 327, 874
BlsI GCNGC 5 cut(s) 72, 75, 78, 328, 875
Bme1390I CCNGG 5 cut(s) 99, 227, 426, 534, 741
Bme18I GGWCC 1 cut(s) 434
BmeT110I CYCGRG 1 cut(s) 657
BmgT120I GGNCC 2 cut(s) 434, 692
BmiI GGNNCC 2 cut(s) 531, 848
BmrFI CCNGG 5 cut(s) 99, 227, 426, 534, 741
BmsI GCATC 2 cut(s) 644, 814
Bpu14I TTCGAA 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 188
BsaBI GATNNNNATC 2 cut(s) 190, 510
BsaJI CCNNGG 3 cut(s) 98, 321, 868
Bsc4I CCNNNNNNNGG 2 cut(s) 368, 431
Bse118I RCCGGY 1 cut(s) 781
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 336
Bse8I GATNNNNATC 2 cut(s) 190, 510
BseBI CCWGG 5 cut(s) 99, 227, 426, 534, 741
BseDI CCNNGG 3 cut(s) 98, 321, 868
BseGI GGATG 2 cut(s) 52, 490
BseJI GATNNNNATC 2 cut(s) 190, 510
BseLI CCNNNNNNNGG 2 cut(s) 368, 431
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 2 cut(s) 494, 579
BseNI ACTGG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 624
BseXI GCAGC 3 cut(s) 63, 85, 313
BsgI GTGCAG 1 cut(s) 545
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 2 cut(s) 424, 694
BsiHKAI GWGCWC 1 cut(s) 658
BsiHKCI CYCGRG 1 cut(s) 657
BsiSI CCGG 1 cut(s) 782
BsiWI CGTACG 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 368, 431
BsmAI GTCTC 2 cut(s) 127, 483
BsmI GAATGC 1 cut(s) 783
BsnI GGCC 2 cut(s) 424, 694
BsoBI CYCGRG 1 cut(s) 657
Bsp119I TTCGAA 1 cut(s) 189
Bsp1286I GDGCHC 2 cut(s) 624, 658
Bsp1407I TGTACA 1 cut(s) 701
Bsp143I GATC 6 cut(s) 22, 156, 358, 371, 398, 511
BspACI CCGC 6 cut(s) 68, 71, 219, 581, 774, 873
BspANI GGCC 2 cut(s) 424, 694
BspCNI CTCAG 2 cut(s) 493, 580
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 2 cut(s) 531, 848
BspPI GGATC 5 cut(s) 17, 151, 353, 379, 506
BspT104I TTCGAA 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 336
BsrFI RCCGGY 1 cut(s) 781
BsrGI TGTACA 1 cut(s) 701
BsrI ACTGG 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 781
BssECI CCNNGG 3 cut(s) 98, 321, 868
BssMI GATC 6 cut(s) 22, 156, 358, 371, 398, 511
BssSI CACGAG 2 cut(s) 150, 304
BssT1I CCWWGG 1 cut(s) 321
Bst2BI CACGAG 2 cut(s) 150, 304
Bst2UI CCWGG 5 cut(s) 99, 227, 426, 534, 741
Bst4CI ACNGT 1 cut(s) 18
Bst6I CTCTTC 2 cut(s) 173, 865
BstAPI GCANNNNNTGC 1 cut(s) 611
BstAUI TGTACA 1 cut(s) 701
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 4 cut(s) 87, 131, 816, 878
BstDEI CTNAG 4 cut(s) 474, 480, 588, 625
BstEII GGTNACC 1 cut(s) 221
BstENI CCTNNNNNAGG 1 cut(s) 366
BstF5I GGATG 2 cut(s) 52, 490
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 6 cut(s) 25, 159, 361, 374, 401, 514
BstMAI GTCTC 2 cut(s) 127, 483
BstMBI GATC 6 cut(s) 22, 156, 358, 371, 398, 511
BstMWI GCNNNNNNNGC 6 cut(s) 76, 82, 287, 326, 611, 824
BstNI CCWGG 5 cut(s) 99, 227, 426, 534, 741
BstNSI RCATGY 1 cut(s) 880
BstPI GGTNACC 1 cut(s) 221
BstSCI CCNGG 5 cut(s) 97, 225, 424, 532, 739
BstSLI GKGCMC 1 cut(s) 624
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 3 cut(s) 63, 85, 313
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BsuRI GGCC 2 cut(s) 424, 694
BtsCI GGATG 2 cut(s) 52, 490
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 2 cut(s) 80, 210
Cac8I GCNNGC 4 cut(s) 87, 131, 816, 878
Cfr10I RCCGGY 1 cut(s) 781
Cfr13I GGNCC 2 cut(s) 434, 692
CseI GACGC 1 cut(s) 225
CsiI ACCWGGT 1 cut(s) 225
Csp6I GTAC 3 cut(s) 19, 208, 702
CviAII CATG 3 cut(s) 182, 829, 877
CviQI GTAC 3 cut(s) 19, 208, 702
DdeI CTNAG 4 cut(s) 474, 480, 588, 625
DpnI GATC 6 cut(s) 24, 158, 360, 373, 400, 513
DpnII GATC 6 cut(s) 22, 156, 358, 371, 398, 511
DraI TTTAAA 1 cut(s) 756
Eam1104I CTCTTC 2 cut(s) 173, 865
EarI CTCTTC 2 cut(s) 173, 865
EciI GGCGGA 2 cut(s) 57, 789
Eco130I CCWWGG 1 cut(s) 321
Eco32I GATATC 1 cut(s) 737
Eco47I GGWCC 1 cut(s) 434
Eco57I CTGAAG 2 cut(s) 660, 846
Eco88I CYCGRG 1 cut(s) 657
Eco91I GGTNACC 1 cut(s) 221
EcoNI CCTNNNNNAGG 1 cut(s) 366
EcoO109I RGGNCCY 1 cut(s) 692
EcoO65I GGTNACC 1 cut(s) 221
EcoRII CCWGG 5 cut(s) 97, 225, 424, 532, 739
EcoRV GATATC 1 cut(s) 737
EcoT14I CCWWGG 1 cut(s) 321
EcoT22I ATGCAT 1 cut(s) 882
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 3 cut(s) 185, 832, 880
FalI AAGNNNNNCTT 2 cut(s) 421, 453
FatI CATG 3 cut(s) 181, 828, 876
Fnu4HI GCNGC 5 cut(s) 71, 74, 77, 327, 874
FokI GGATG 2 cut(s) 39, 497
Fsp4HI GCNGC 5 cut(s) 71, 74, 77, 327, 874
FspBI CTAG 6 cut(s) 392, 396, 408, 689, 732, 768
GluI GCNGC 5 cut(s) 71, 74, 77, 327, 874
HaeIII GGCC 2 cut(s) 424, 694
HapII CCGG 1 cut(s) 782
HgaI GACGC 1 cut(s) 225
Hin1II CATG 3 cut(s) 185, 832, 880
HinfI GANTC 7 cut(s) 186, 191, 307, 315, 545, 584, 832
HpaII CCGG 1 cut(s) 782
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 2 cut(s) 210, 434
Hpy188I TCNGA 4 cut(s) 589, 640, 764, 865
Hpy188III TCNNGA 6 cut(s) 152, 304, 408, 482, 515, 732
Hpy8I GTNNAC 2 cut(s) 210, 434
Hpy99I CGWCG 3 cut(s) 95, 177, 180
HpyAV CCTTC 2 cut(s) 494, 635
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4IV ACGT 2 cut(s) 33, 141
HpyCH4V TGCA 5 cut(s) 296, 329, 526, 788, 880
HpyF10VI GCNNNNNNNGC 6 cut(s) 76, 82, 287, 326, 611, 824
HpyF3I CTNAG 4 cut(s) 474, 480, 588, 625
HpySE526I ACGT 2 cut(s) 33, 141
Hsp92II CATG 3 cut(s) 185, 832, 880
Kzo9I GATC 6 cut(s) 22, 156, 358, 371, 398, 511
Lsp1109I GCAGC 3 cut(s) 63, 85, 313
LweI GCATC 2 cut(s) 644, 814
MabI ACCWGGT 1 cut(s) 225
MaeI CTAG 6 cut(s) 392, 396, 408, 689, 732, 768
MaeII ACGT 2 cut(s) 33, 141
MaeIII GTNAC 1 cut(s) 221
MalI GATC 6 cut(s) 24, 158, 360, 373, 400, 513
MboI GATC 6 cut(s) 22, 156, 358, 371, 398, 511
MboII GAAGA 6 cut(s) 56, 160, 423, 719, 830, 852
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 2 cut(s) 624, 658
MluCI AATT 4 cut(s) 245, 353, 468, 697
MlyI GAGTC 1 cut(s) 316
MnlI CCTC 9 cut(s) 66, 372, 514, 638, 764, 796, 860, 863, 868
Mph1103I ATGCAT 1 cut(s) 882
MseI TTAA 3 cut(s) 108, 144, 755
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 1 cut(s) 782
MspR9I CCNGG 5 cut(s) 99, 227, 426, 534, 741
Mva1269I GAATGC 1 cut(s) 783
MvaI CCWGG 5 cut(s) 99, 227, 426, 534, 741
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 6 cut(s) 76, 82, 287, 326, 611, 824
NdeII GATC 6 cut(s) 22, 156, 358, 371, 398, 511
NlaIII CATG 3 cut(s) 185, 832, 880
NlaIV GGNNCC 2 cut(s) 531, 848
NmuCI GTSAC 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 882
NspI RCATGY 1 cut(s) 880
NspV TTCGAA 1 cut(s) 189
PaeI GCATGC 1 cut(s) 880
PaeR7I CTCGAG 1 cut(s) 657
PctI GAATGC 1 cut(s) 783
PfeI GAWTC 6 cut(s) 186, 191, 315, 545, 584, 832
Pfl23II CGTACG 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 431
PkrI GCNGC 5 cut(s) 72, 75, 78, 328, 875
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
Psp6I CCWGG 5 cut(s) 97, 225, 424, 532, 739
PspEI GGTNACC 1 cut(s) 221
PspGI CCWGG 5 cut(s) 97, 225, 424, 532, 739
PspLI CGTACG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 531, 848
PspPI GGNCC 2 cut(s) 434, 692
PspXI VCTCGAGB 1 cut(s) 657
PsuI RGATCY 1 cut(s) 156
PvuII CAGCTG 1 cut(s) 76
RsaI GTAC 3 cut(s) 20, 209, 703
RsaNI GTAC 3 cut(s) 19, 208, 702
SaqAI TTAA 3 cut(s) 108, 144, 755
SatI GCNGC 5 cut(s) 71, 74, 77, 327, 874
Sau3AI GATC 6 cut(s) 22, 156, 358, 371, 398, 511
Sau96I GGNCC 2 cut(s) 434, 692
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 5 cut(s) 99, 227, 426, 534, 741
SduI GDGCHC 2 cut(s) 624, 658
SexAI ACCWGGT 1 cut(s) 225
SfaNI GCATC 2 cut(s) 644, 814
Sfr274I CTCGAG 1 cut(s) 657
SfuI TTCGAA 1 cut(s) 189
SinI GGWCC 1 cut(s) 434
SlaI CTCGAG 1 cut(s) 657
SmlI CTYRAG 2 cut(s) 203, 657
SmoI CTYRAG 2 cut(s) 203, 657
SphI GCATGC 1 cut(s) 880
Sse9I AATT 4 cut(s) 245, 353, 468, 697
SsiI CCGC 6 cut(s) 68, 71, 219, 581, 774, 873
SspMI CTAG 6 cut(s) 392, 396, 408, 689, 732, 768
StyD4I CCNGG 5 cut(s) 97, 225, 424, 532, 739
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 18
TaiI ACGT 2 cut(s) 36, 144
TaqI TCGA 4 cut(s) 189, 658, 668, 810
TaqII GACCGA 1 cut(s) 882
TasI AATT 4 cut(s) 245, 353, 468, 697
TatI WGTACW 2 cut(s) 207, 701
TauI GCSGC 2 cut(s) 73, 876
TfiI GAWTC 6 cut(s) 186, 191, 315, 545, 584, 832
Tru1I TTAA 3 cut(s) 108, 144, 755
Tru9I TTAA 3 cut(s) 108, 144, 755
TscAI CASTG 2 cut(s) 87, 217
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 3 cut(s) 73, 76, 326
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 5 cut(s) 35, 347, 513, 726, 845
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 2 cut(s) 87, 217
Van91I CCANNNNNTGG 1 cut(s) 431
VpaK11BI GGWCC 1 cut(s) 434
XagI CCTNNNNNAGG 1 cut(s) 366
XapI RAATTY 2 cut(s) 353, 468
XbaI TCTAGA 2 cut(s) 407, 731
XceI RCATGY 1 cut(s) 880
XhoI CTCGAG 1 cut(s) 657
XspI CTAG 6 cut(s) 392, 396, 408, 689, 732, 768
Zsp2I ATGCAT 1 cut(s) 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.