MD09G1194800.v1.1

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0008567
Physical Location & Seq
Forward (+)
17564621 .. 17568190
3570 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1194800.v1.1.491

Sequence Viewer

Length: 837 bp
ATGGCTCATCCACCGTACGATCCCTACTATCTACAGCCGCAACCGCAACCACAACCACAGGACTACAGTGACCGGAGCGCGATCAACACGCTCTTCGTCTCCGGCCTCCCGGACGACGTCAAAGCGCGTGAGATTCACAACCTCTTCCGCCGGCGCCCGGGCTTCGACTCTTGCCAGCTCAAGTACACGGGTCGCGGCAACCAGGTCGTTGCTTTTGCTACGTTCTTCAATCACCAGTCAGCAATGGCAGCTCTGCATTCGTTAAATGGTGTGAAATTTGATCCTCAAACTGGGTCCCTGCTGCATATTGAACTTGCCAGATCAAACTCAAGAAGGAAGCGTAAACCAGGTAGTGGAGCTTATGTTGTTATAGATAAAAGAACTAAAAAAGAGGCTGATACCCAAGAAACGTCTAGTGATGATGGAGAAAGTGAATCTGATGAACCATCTGAAACTGACAAGCATGATTCTGGGGACAAGAGTGATCTAGCAACCACGAAGAGCGGTGAGACTGCGGTGGATTCTGAGAATGCTGTAGCTGCTGTAAATGACCAACCTGAAAAGCATGTTGATGCAGGACAATGTTCTACTCTGTTCATTGCAAATCTAGGTCCAAATTGCACGGAAGATGAGTTGAAGCAAGTTCTATCTCAGTATACTGGATTCAACGTGATCAAACTGCGTGCTAAAGGTGGAATGCCAGTTGCATTTGCTGATTTTGAGGAAATTGAACAAGCTAACAAAGCCATGGATGAACTTCGTGGAAGCTCGTTACCATCTTCAGACAGGGGCGGCATGCATATAGAATATGCAAGGTCTAAAATGAGGAAGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

279

Amino Acids

30.64

Weight (kDa)

5.66

Isoelectric Point (pI)

65.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 31 - 94 5.9e-08 RNA recognition motif
RRM_1 PF00076 198 - 259 7.6e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 153
AccB7I CCANNNNNTGG 1 cut(s) 353
AccBSI CCGCTC 1 cut(s) 504
AccI GTMKAC 1 cut(s) 656
AccII CGCG 3 cut(s) 80, 127, 195
AciI CCGC 7 cut(s) 38, 44, 148, 195, 504, 515, 792
AclWI GGATC 2 cut(s) 14, 275
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 765
AcyI GRCGYC 2 cut(s) 117, 154
AfaI GTAC 2 cut(s) 17, 185
AfiI CCNNNNNNNGG 3 cut(s) 157, 290, 353
AgsI TTSAA 5 cut(s) 229, 311, 637, 667, 731
AjnI CCWGG 2 cut(s) 201, 346
AluBI AGCT 6 cut(s) 178, 251, 359, 539, 737, 768
AluI AGCT 6 cut(s) 178, 251, 359, 539, 737, 768
Alw26I GTCTC 2 cut(s) 103, 503
AlwI GGATC 2 cut(s) 14, 275
Ama87I CYCGRG 1 cut(s) 157
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 3 cut(s) 248, 301, 539
ApoI RAATTY 1 cut(s) 275
AspLEI GCGC 3 cut(s) 80, 127, 156
AspS9I GGNCC 2 cut(s) 294, 611
AsuC2I CCSGG 3 cut(s) 110, 158, 159
AsuHPI GGTGA 2 cut(s) 224, 518
AvaI CYCGRG 1 cut(s) 157
AvaII GGWCC 2 cut(s) 294, 611
BanI GGYRCC 1 cut(s) 153
BbvI GCAGC 3 cut(s) 260, 288, 526
BccI CCATC 3 cut(s) 416, 454, 784
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BciT130I CCWGG 2 cut(s) 203, 348
BclI TGATCA 1 cut(s) 672
BcnI CCSGG 3 cut(s) 110, 158, 159
BcoDI GTCTC 2 cut(s) 103, 503
BfaI CTAG 3 cut(s) 414, 488, 608
BfmI CTRYAG 3 cut(s) 32, 64, 534
BfoI RGCGCY 1 cut(s) 157
BisI GCNGC 6 cut(s) 38, 196, 249, 302, 540, 793
BlsI GCNGC 6 cut(s) 39, 197, 250, 303, 541, 794
Bme1390I CCNGG 5 cut(s) 110, 158, 159, 203, 348
Bme18I GGWCC 2 cut(s) 294, 611
BmeT110I CYCGRG 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 294, 611
BmiI GGNNCC 3 cut(s) 155, 295, 296
BmrFI CCNGG 5 cut(s) 110, 158, 159, 203, 348
BmrI ACTGGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 562
BmuI ACTGGG 1 cut(s) 300
BpuEI CTTGAG 2 cut(s) 164, 313
BpuMI CCSGG 3 cut(s) 110, 158, 159
BsaHI GRCGYC 2 cut(s) 117, 154
BsaJI CCNNGG 2 cut(s) 157, 747
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 290, 353
Bse118I RCCGGY 1 cut(s) 150
Bse1I ACTGG 4 cut(s) 235, 295, 664, 701
Bse3DI GCAATG 2 cut(s) 249, 597
BseBI CCWGG 2 cut(s) 203, 348
BseDI CCNNGG 2 cut(s) 157, 747
BseGI GGATG 2 cut(s) 7, 757
BseLI CCNNNNNNNGG 3 cut(s) 157, 290, 353
BseMI GCAATG 2 cut(s) 249, 597
BseMII CTCAG 2 cut(s) 516, 665
BseNI ACTGG 4 cut(s) 235, 295, 664, 701
BseXI GCAGC 3 cut(s) 260, 288, 526
Bsh1236I CGCG 3 cut(s) 80, 127, 195
BshFI GGCC 1 cut(s) 105
BshNI GGYRCC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 157
BsiSI CCGG 5 cut(s) 73, 102, 110, 151, 158
BsiWI CGTACG 1 cut(s) 15
BslFI GGGAC 2 cut(s) 280, 488
BslI CCNNNNNNNGG 3 cut(s) 157, 290, 353
BsmAI GTCTC 2 cut(s) 103, 503
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 2 cut(s) 280, 488
BsmI GAATGC 3 cut(s) 256, 535, 702
BsnI GGCC 1 cut(s) 105
BsoBI CYCGRG 1 cut(s) 157
Bsp143I GATC 6 cut(s) 19, 81, 280, 320, 484, 672
Bsp19I CCATGG 1 cut(s) 747
BspACI CCGC 7 cut(s) 38, 44, 148, 195, 504, 515, 792
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 2 cut(s) 517, 664
BspFNI CGCG 3 cut(s) 80, 127, 195
BspLI GGNNCC 3 cut(s) 155, 295, 296
BspPI GGATC 2 cut(s) 14, 275
BspQI GCTCTTC 2 cut(s) 98, 494
BspT107I GGYRCC 1 cut(s) 153
BsrBI CCGCTC 1 cut(s) 504
BsrDI GCAATG 2 cut(s) 249, 597
BsrFI RCCGGY 1 cut(s) 150
BsrI ACTGG 4 cut(s) 235, 295, 664, 701
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 2 cut(s) 157, 747
BssMI GATC 6 cut(s) 19, 81, 280, 320, 484, 672
BssNAI GTATAC 1 cut(s) 657
BssNI GRCGYC 2 cut(s) 117, 154
BssT1I CCWWGG 1 cut(s) 747
Bst1107I GTATAC 1 cut(s) 657
Bst2UI CCWGG 2 cut(s) 203, 348
Bst4CI ACNGT 2 cut(s) 15, 68
Bst6I CTCTTC 3 cut(s) 98, 149, 494
BstACI GRCGYC 2 cut(s) 117, 154
BstC8I GCNNGC 4 cut(s) 152, 176, 684, 797
BstDEI CTNAG 2 cut(s) 525, 651
BstDSI CCRYGG 1 cut(s) 747
BstF5I GGATG 2 cut(s) 7, 757
BstFNI CGCG 3 cut(s) 80, 127, 195
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 3 cut(s) 80, 127, 156
BstKTI GATC 6 cut(s) 22, 84, 283, 323, 487, 675
BstMAI GTCTC 2 cut(s) 103, 503
BstMBI GATC 6 cut(s) 19, 81, 280, 320, 484, 672
BstMWI GCNNNNNNNGC 4 cut(s) 43, 248, 539, 743
BstNI CCWGG 2 cut(s) 203, 348
BstNSI RCATGY 2 cut(s) 569, 799
BstSCI CCNGG 5 cut(s) 108, 156, 157, 201, 346
BstSFI CTRYAG 3 cut(s) 32, 64, 534
BstUI CGCG 3 cut(s) 80, 127, 195
BstV1I GCAGC 3 cut(s) 260, 288, 526
BstZ17I GTATAC 1 cut(s) 657
BsuRI GGCC 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 747
BtsCI GGATG 2 cut(s) 7, 757
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 4 cut(s) 152, 176, 684, 797
CfoI GCGC 3 cut(s) 80, 127, 156
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 294, 611
Cfr9I CCCGGG 1 cut(s) 157
CsiI ACCWGGT 2 cut(s) 201, 346
Csp6I GTAC 2 cut(s) 16, 184
CviAII CATG 4 cut(s) 464, 566, 748, 796
CviQI GTAC 2 cut(s) 16, 184
DdeI CTNAG 2 cut(s) 525, 651
DinI GGCGCC 1 cut(s) 155
DpnI GATC 6 cut(s) 21, 83, 282, 322, 486, 674
DpnII GATC 6 cut(s) 19, 81, 280, 320, 484, 672
Eam1104I CTCTTC 3 cut(s) 98, 149, 494
EarI CTCTTC 3 cut(s) 98, 149, 494
EciI GGCGGA 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 747
Eco47I GGWCC 2 cut(s) 294, 611
Eco57I CTGAAG 1 cut(s) 765
Eco88I CYCGRG 1 cut(s) 157
EcoO109I RGGNCCY 1 cut(s) 294
EcoRII CCWGG 2 cut(s) 201, 346
EcoT14I CCWWGG 1 cut(s) 747
EcoT22I ATGCAT 1 cut(s) 801
EgeI GGCGCC 1 cut(s) 155
EheI GGCGCC 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 747
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 4 cut(s) 467, 569, 751, 799
FaqI GGGAC 2 cut(s) 280, 488
FatI CATG 4 cut(s) 463, 565, 747, 795
FbaI TGATCA 1 cut(s) 672
FblI GTMKAC 1 cut(s) 656
Fnu4HI GCNGC 6 cut(s) 38, 196, 249, 302, 540, 793
FokI GGATG 1 cut(s) 764
Fsp4HI GCNGC 6 cut(s) 38, 196, 249, 302, 540, 793
FspBI CTAG 3 cut(s) 414, 488, 608
GlaI GCGC 3 cut(s) 79, 126, 155
GluI GCNGC 6 cut(s) 38, 196, 249, 302, 540, 793
HaeII RGCGCY 1 cut(s) 157
HaeIII GGCC 1 cut(s) 105
HapII CCGG 5 cut(s) 73, 102, 110, 151, 158
HhaI GCGC 3 cut(s) 80, 127, 156
Hin1I GRCGYC 2 cut(s) 117, 154
Hin1II CATG 4 cut(s) 467, 569, 751, 799
Hin6I GCGC 3 cut(s) 78, 125, 154
HinP1I GCGC 3 cut(s) 78, 125, 154
HinfI GANTC 6 cut(s) 133, 167, 434, 467, 521, 663
HpaII CCGG 5 cut(s) 73, 102, 110, 151, 158
HphI GGTGA 2 cut(s) 224, 518
Hpy166II GTNNAC 3 cut(s) 186, 344, 657
Hpy188I TCNGA 4 cut(s) 439, 451, 526, 784
Hpy188III TCNNGA 1 cut(s) 330
Hpy8I GTNNAC 3 cut(s) 186, 344, 657
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 2 cut(s) 15, 68
HpyCH4IV ACGT 4 cut(s) 117, 221, 410, 669
HpyCH4V TGCA 8 cut(s) 256, 304, 575, 602, 621, 707, 799, 812
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 248, 539, 743
HpyF3I CTNAG 2 cut(s) 525, 651
HpySE526I ACGT 4 cut(s) 117, 221, 410, 669
Hsp92I GRCGYC 2 cut(s) 117, 154
Hsp92II CATG 4 cut(s) 467, 569, 751, 799
HspAI GCGC 3 cut(s) 78, 125, 154
KasI GGCGCC 1 cut(s) 153
KflI GGGWCCC 1 cut(s) 294
KroI GCCGGC 1 cut(s) 150
KroNI GCCGGC 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 672
Kzo9I GATC 6 cut(s) 19, 81, 280, 320, 484, 672
LguI GCTCTTC 2 cut(s) 98, 494
LmnI GCTCC 2 cut(s) 75, 356
Lsp1109I GCAGC 3 cut(s) 260, 288, 526
LweI GCATC 1 cut(s) 562
MabI ACCWGGT 2 cut(s) 201, 346
MaeI CTAG 3 cut(s) 414, 488, 608
MaeII ACGT 4 cut(s) 117, 221, 410, 669
MaeIII GTNAC 2 cut(s) 68, 771
MalI GATC 6 cut(s) 21, 83, 282, 322, 486, 674
MbiI CCGCTC 1 cut(s) 504
MboI GATC 6 cut(s) 19, 81, 280, 320, 484, 672
MboII GAAGA 6 cut(s) 85, 136, 217, 511, 638, 771
MluCI AATT 3 cut(s) 275, 616, 726
Mly113I GGCGCC 1 cut(s) 154
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 6 cut(s) 116, 152, 294, 385, 715, 819
Mph1103I ATGCAT 1 cut(s) 801
MreI CGCCGGCG 1 cut(s) 150
MroNI GCCGGC 1 cut(s) 150
MseI TTAA 1 cut(s) 263
MslI CAYNNNNRTG 1 cut(s) 570
MspI CCGG 5 cut(s) 73, 102, 110, 151, 158
MspR9I CCNGG 5 cut(s) 110, 158, 159, 203, 348
Mva1269I GAATGC 3 cut(s) 256, 535, 702
MvaI CCWGG 2 cut(s) 203, 348
MvnI CGCG 3 cut(s) 80, 127, 195
MwoI GCNNNNNNNGC 4 cut(s) 43, 248, 539, 743
NaeI GCCGGC 1 cut(s) 152
NarI GGCGCC 1 cut(s) 154
NciI CCSGG 3 cut(s) 110, 158, 159
NcoI CCATGG 1 cut(s) 747
NdeII GATC 6 cut(s) 19, 81, 280, 320, 484, 672
NgoMIV GCCGGC 1 cut(s) 150
NlaIII CATG 4 cut(s) 467, 569, 751, 799
NlaIV GGNNCC 3 cut(s) 155, 295, 296
NmuCI GTSAC 1 cut(s) 68
NsiI ATGCAT 1 cut(s) 801
NspI RCATGY 2 cut(s) 569, 799
PaeI GCATGC 1 cut(s) 799
PciSI GCTCTTC 2 cut(s) 98, 494
PctI GAATGC 3 cut(s) 256, 535, 702
PdiI GCCGGC 1 cut(s) 152
PfeI GAWTC 5 cut(s) 133, 434, 467, 521, 663
Pfl23II CGTACG 1 cut(s) 15
PflFI GACNNNGTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 353
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 6 cut(s) 39, 197, 250, 303, 541, 794
PleI GAGTC 1 cut(s) 161
PluTI GGCGCC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 161
PpuMI RGGWCCY 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 294
Psp6I CCWGG 2 cut(s) 201, 346
PspGI CCWGG 2 cut(s) 201, 346
PspLI CGTACG 1 cut(s) 15
PspN4I GGNNCC 3 cut(s) 155, 295, 296
PspPI GGNCC 2 cut(s) 294, 611
PspPPI RGGWCCY 1 cut(s) 294
PsyI GACNNNGTC 1 cut(s) 116
RsaI GTAC 2 cut(s) 17, 185
RsaNI GTAC 2 cut(s) 16, 184
RseI CAYNNNNRTG 1 cut(s) 570
SapI GCTCTTC 2 cut(s) 98, 494
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 6 cut(s) 38, 196, 249, 302, 540, 793
Sau3AI GATC 6 cut(s) 19, 81, 280, 320, 484, 672
Sau96I GGNCC 2 cut(s) 294, 611
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 5 cut(s) 110, 158, 159, 203, 348
SexAI ACCWGGT 2 cut(s) 201, 346
SfaNI GCATC 1 cut(s) 562
SfcI CTRYAG 3 cut(s) 32, 64, 534
SfoI GGCGCC 1 cut(s) 155
SgrAI CRCCGGYG 1 cut(s) 150
SinI GGWCC 2 cut(s) 294, 611
SmaI CCCGGG 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 570
SmlI CTYRAG 2 cut(s) 179, 328
SmoI CTYRAG 2 cut(s) 179, 328
SphI GCATGC 1 cut(s) 799
SrfI GCCCGGGC 1 cut(s) 159
Sse9I AATT 3 cut(s) 275, 616, 726
SsiI CCGC 7 cut(s) 38, 44, 148, 195, 504, 515, 792
SspDI GGCGCC 1 cut(s) 153
SspMI CTAG 3 cut(s) 414, 488, 608
StyD4I CCNGG 5 cut(s) 108, 156, 157, 201, 346
StyI CCWWGG 1 cut(s) 747
TaaI ACNGT 2 cut(s) 15, 68
TaiI ACGT 4 cut(s) 120, 224, 413, 672
TaqI TCGA 1 cut(s) 165
TasI AATT 3 cut(s) 275, 616, 726
TatI WGTACW 1 cut(s) 183
TauI GCSGC 3 cut(s) 40, 198, 795
TfiI GAWTC 5 cut(s) 133, 434, 467, 521, 663
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 3 cut(s) 248, 301, 539
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 3 cut(s) 456, 586, 768
TspGWI ACGGA 1 cut(s) 638
TspMI CCCGGG 1 cut(s) 157
TspRI CASTG 1 cut(s) 73
Tth111I GACNNNGTC 1 cut(s) 116
Van91I CCANNNNNTGG 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 294, 611
XapI RAATTY 1 cut(s) 275
XceI RCATGY 2 cut(s) 569, 799
XmaI CCCGGG 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 656
XspI CTAG 3 cut(s) 414, 488, 608
ZraI GACGTC 1 cut(s) 118
Zsp2I ATGCAT 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.