Rh2AG428500

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0008567
Physical Location & Seq
Reverse (-)
63630469 .. 63633871
3403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG428500.1

Sequence Viewer

Length: 816 bp
ATGGCTCATCCGCCCTACGACCCCTACTACCTGCCGCAACCACAGCAACCGCCGCCACTACCGGATTACAGCGACCGGAGCGTGATTAACACGCTTTTCGTCTCGGGCCTCCCCGACGACGTCAAGGCGCGTGAAATTCACAACCTCTTCCGCCGGCGACCTGGCTTCGACTCTTGCCAGCTCAAGTACACCGGCCGCGGCAACCAGGTCGTTGCTTTTGCTACGTTTTTCAATCACCAATCGGCAATTGCAGCTCTACATGCGTTAAATGGTGTCAAATTTGATCCTCAAACTGGGTCCTTGCTGCATATTGAACTTGCTAGATCAAACTCGAGAAGGAAGCGTAAACCAGGTAGTGGAGCCTATGTGGTTATAGATAAAAGGAGTAAAAAAGAGGATGATAACCAAGGAACGTCAAGCGATGATGGTAATGAGCAATCCGAAAAGCATGTTGATGGAGGACAATGTTCCACTCTGTTCATTGCAAATCTAGGTCCTAATTGCACCGAAGATGAACTGAAGCAAGTTTTGTGTCAGTATCCTGGATTTAATGTGATCAAATTGCGTGCTAAAGGTGGGATGCCAGTTGCTTTTGCTGATTTTGAGGAAATTGAACAAGCTAATAAAGCCATGGATGAACTTCGTGGCACCATGTTACCATCTTCAGACCGGGGTGGCATGCATATAGACCATGTTCTCTTCTATTCAAATTGCCTTGGTATTTTCAATGCTACCTCAGCCAAAACCAGATCAGCTACAGCTAGTAATTTGAATATCTCAGGGAATCACAGACATAACGCTATACCCAAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

271

Amino Acids

29.93

Weight (kDa)

7.71

Isoelectric Point (pI)

64.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 32 - 95 1.3e-08 RNA recognition motif
RRM_1 PF00076 159 - 221 8.2e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
Acc36I ACCTGC 1 cut(s) 39
AccB1I GGYRCC 1 cut(s) 647
AccB7I CCANNNNNTGG 1 cut(s) 356
AccII CGCG 2 cut(s) 130, 198
AciI CCGC 7 cut(s) 11, 35, 50, 53, 151, 196, 198
AclWI GGATC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 2 cut(s) 135, 278
AcuI CTGAAG 2 cut(s) 539, 648
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 293, 356
AgsI TTSAA 6 cut(s) 232, 314, 614, 708, 727, 772
AjnI CCWGG 4 cut(s) 160, 204, 349, 541
AluBI AGCT 5 cut(s) 181, 254, 620, 755, 761
AluI AGCT 5 cut(s) 181, 254, 620, 755, 761
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 1 cut(s) 278
Ama87I CYCGRG 2 cut(s) 103, 331
AoxI GGCC 2 cut(s) 106, 193
ApeKI GCWGC 2 cut(s) 251, 304
ApoI RAATTY 2 cut(s) 135, 278
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 3 cut(s) 106, 297, 494
AsuC2I CCSGG 1 cut(s) 671
AsuHPI GGTGA 1 cut(s) 227
AvaI CYCGRG 2 cut(s) 103, 331
AvaII GGWCC 2 cut(s) 297, 494
BanI GGYRCC 1 cut(s) 647
BbvCI CCTCAGC 1 cut(s) 736
BbvI GCAGC 2 cut(s) 263, 291
BccI CCATC 3 cut(s) 419, 449, 667
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BciT130I CCWGG 4 cut(s) 162, 206, 351, 543
BciVI GTATCC 1 cut(s) 549
BclI TGATCA 1 cut(s) 555
BcnI CCSGG 1 cut(s) 671
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 4 cut(s) 321, 491, 762, 814
BfmI CTRYAG 1 cut(s) 756
BfuAI ACCTGC 1 cut(s) 39
BfuI GTATCC 1 cut(s) 549
BisI GCNGC 6 cut(s) 35, 53, 196, 199, 252, 305
BlsI GCNGC 6 cut(s) 36, 54, 197, 200, 253, 306
Bme1390I CCNGG 5 cut(s) 162, 206, 351, 543, 671
Bme18I GGWCC 2 cut(s) 297, 494
BmeT110I CYCGRG 2 cut(s) 103, 331
BmgT120I GGNCC 3 cut(s) 106, 297, 494
BmiI GGNNCC 3 cut(s) 298, 361, 649
BmrFI CCNGG 5 cut(s) 162, 206, 351, 543, 671
BmrI ACTGGG 1 cut(s) 303
BmsI GCATC 1 cut(s) 570
BmuI ACTGGG 1 cut(s) 303
Bpu10I CCTNAGC 1 cut(s) 736
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 671
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 5 cut(s) 196, 406, 630, 670, 715
BsaWI WCCGGW 2 cut(s) 61, 75
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 293, 356
Bse118I RCCGGY 2 cut(s) 153, 191
Bse1I ACTGG 2 cut(s) 298, 584
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 4 cut(s) 162, 206, 351, 543
BseDI CCNNGG 5 cut(s) 196, 406, 630, 670, 715
BseGI GGATG 4 cut(s) 7, 403, 585, 640
BseLI CCNNNNNNNGG 2 cut(s) 293, 356
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 2 cut(s) 750, 792
BseNI ACTGG 2 cut(s) 298, 584
BseX3I CGGCCG 1 cut(s) 193
BseXI GCAGC 2 cut(s) 263, 291
Bsh1236I CGCG 2 cut(s) 130, 198
Bsh1285I CGRYCG 2 cut(s) 76, 196
BshFI GGCC 2 cut(s) 108, 195
BshNI GGYRCC 1 cut(s) 647
BsiEI CGRYCG 2 cut(s) 76, 196
BsiHKCI CYCGRG 2 cut(s) 103, 331
BsiSI CCGG 5 cut(s) 62, 76, 154, 192, 670
BslI CCNNNNNNNGG 2 cut(s) 293, 356
BsmAI GTCTC 1 cut(s) 106
BsmBI CGTCTC 1 cut(s) 106
BsnI GGCC 2 cut(s) 108, 195
BsoBI CYCGRG 2 cut(s) 103, 331
Bsp143I GATC 4 cut(s) 283, 323, 555, 749
Bsp19I CCATGG 1 cut(s) 630
BspACI CCGC 7 cut(s) 11, 35, 50, 53, 151, 196, 198
BspANI GGCC 2 cut(s) 108, 195
BspCNI CTCAG 2 cut(s) 749, 791
BspFNI CGCG 2 cut(s) 130, 198
BspLI GGNNCC 3 cut(s) 298, 361, 649
BspMI ACCTGC 1 cut(s) 39
BspPI GGATC 1 cut(s) 278
BspT107I GGYRCC 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 480
BsrFI RCCGGY 2 cut(s) 153, 191
BsrI ACTGG 2 cut(s) 298, 584
BssAI RCCGGY 2 cut(s) 153, 191
BssECI CCNNGG 5 cut(s) 196, 406, 630, 670, 715
BssMI GATC 4 cut(s) 283, 323, 555, 749
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 3 cut(s) 406, 630, 715
Bst2UI CCWGG 4 cut(s) 162, 206, 351, 543
Bst6I CTCTTC 2 cut(s) 152, 704
BstACI GRCGYC 1 cut(s) 120
BstC8I GCNNGC 4 cut(s) 155, 179, 567, 680
BstDEI CTNAG 2 cut(s) 736, 778
BstDSI CCRYGG 2 cut(s) 196, 630
BstF5I GGATG 4 cut(s) 7, 403, 585, 640
BstFNI CGCG 2 cut(s) 130, 198
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 4 cut(s) 286, 326, 558, 752
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 4 cut(s) 283, 323, 555, 749
BstMCI CGRYCG 2 cut(s) 76, 196
BstMWI GCNNNNNNNGC 7 cut(s) 43, 52, 78, 251, 260, 626, 737
BstNI CCWGG 4 cut(s) 162, 206, 351, 543
BstNSI RCATGY 3 cut(s) 263, 452, 682
BstSCI CCNGG 5 cut(s) 160, 204, 349, 541, 669
BstSFI CTRYAG 1 cut(s) 756
BstUI CGCG 2 cut(s) 130, 198
BstV1I GCAGC 2 cut(s) 263, 291
BstZI CGGCCG 1 cut(s) 193
BsuI GTATCC 1 cut(s) 549
BsuRI GGCC 2 cut(s) 108, 195
BtgI CCRYGG 2 cut(s) 196, 630
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 4 cut(s) 7, 403, 585, 640
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 4 cut(s) 155, 179, 567, 680
CfoI GCGC 1 cut(s) 130
Cfr10I RCCGGY 2 cut(s) 153, 191
Cfr13I GGNCC 3 cut(s) 106, 297, 494
Cfr42I CCGCGG 1 cut(s) 199
CsiI ACCWGGT 2 cut(s) 204, 349
Csp6I GTAC 1 cut(s) 187
CviAII CATG 6 cut(s) 260, 449, 631, 652, 679, 692
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 2 cut(s) 736, 778
DpnI GATC 4 cut(s) 285, 325, 557, 751
DpnII GATC 4 cut(s) 283, 323, 555, 749
EaeI YGGCCR 1 cut(s) 193
EagI CGGCCG 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 152, 704
EarI CTCTTC 2 cut(s) 152, 704
EciI GGCGGA 1 cut(s) 140
EclXI CGGCCG 1 cut(s) 193
Eco130I CCWWGG 3 cut(s) 406, 630, 715
Eco47I GGWCC 2 cut(s) 297, 494
Eco52I CGGCCG 1 cut(s) 193
Eco57I CTGAAG 2 cut(s) 539, 648
Eco88I CYCGRG 2 cut(s) 103, 331
EcoO109I RGGNCCY 2 cut(s) 297, 494
EcoRII CCWGG 4 cut(s) 160, 204, 349, 541
EcoT14I CCWWGG 3 cut(s) 406, 630, 715
EcoT22I ATGCAT 1 cut(s) 684
ErhI CCWWGG 3 cut(s) 406, 630, 715
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 6 cut(s) 263, 452, 634, 655, 682, 695
FatI CATG 6 cut(s) 259, 448, 630, 651, 678, 691
FbaI TGATCA 1 cut(s) 555
Fnu4HI GCNGC 6 cut(s) 35, 53, 196, 199, 252, 305
FokI GGATG 3 cut(s) 410, 592, 647
Fsp4HI GCNGC 6 cut(s) 35, 53, 196, 199, 252, 305
FspBI CTAG 4 cut(s) 321, 491, 762, 814
GlaI GCGC 1 cut(s) 129
GluI GCNGC 6 cut(s) 35, 53, 196, 199, 252, 305
HaeIII GGCC 2 cut(s) 108, 195
HapII CCGG 5 cut(s) 62, 76, 154, 192, 670
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 6 cut(s) 263, 452, 634, 655, 682, 695
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HinfI GANTC 2 cut(s) 170, 784
HpaII CCGG 5 cut(s) 62, 76, 154, 192, 670
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 189, 347
Hpy188I TCNGA 2 cut(s) 442, 667
Hpy188III TCNNGA 1 cut(s) 333
Hpy8I GTNNAC 2 cut(s) 189, 347
Hpy99I CGWCG 2 cut(s) 119, 122
HpyAV CCTTC 1 cut(s) 330
HpyCH4IV ACGT 3 cut(s) 120, 224, 413
HpyCH4V TGCA 5 cut(s) 251, 307, 485, 504, 682
HpyF10VI GCNNNNNNNGC 7 cut(s) 43, 52, 78, 251, 260, 626, 737
HpyF3I CTNAG 2 cut(s) 736, 778
HpySE526I ACGT 3 cut(s) 120, 224, 413
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 6 cut(s) 263, 452, 634, 655, 682, 695
HspAI GCGC 1 cut(s) 128
KroI GCCGGC 1 cut(s) 153
KroNI GCCGGC 1 cut(s) 155
Ksp22I TGATCA 1 cut(s) 555
KspI CCGCGG 1 cut(s) 199
Kzo9I GATC 4 cut(s) 283, 323, 555, 749
LmnI GCTCC 2 cut(s) 78, 359
Lsp1109I GCAGC 2 cut(s) 263, 291
LweI GCATC 1 cut(s) 570
MabI ACCWGGT 2 cut(s) 204, 349
MaeI CTAG 4 cut(s) 321, 491, 762, 814
MaeII ACGT 3 cut(s) 120, 224, 413
MaeIII GTNAC 1 cut(s) 654
MalI GATC 4 cut(s) 285, 325, 557, 751
MboI GATC 4 cut(s) 283, 323, 555, 749
MboII GAAGA 4 cut(s) 139, 521, 654, 691
MfeI CAATTG 1 cut(s) 246
MluCI AATT 8 cut(s) 135, 246, 278, 499, 560, 609, 709, 766
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 7 cut(s) 119, 155, 297, 388, 452, 598, 745
Mph1103I ATGCAT 1 cut(s) 684
MreI CGCCGGCG 1 cut(s) 153
MroNI GCCGGC 1 cut(s) 153
MseI TTAA 3 cut(s) 87, 266, 549
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 5 cut(s) 62, 76, 154, 192, 670
MspR9I CCNGG 5 cut(s) 162, 206, 351, 543, 671
MunI CAATTG 1 cut(s) 246
MvaI CCWGG 4 cut(s) 162, 206, 351, 543
MvnI CGCG 2 cut(s) 130, 198
MwoI GCNNNNNNNGC 7 cut(s) 43, 52, 78, 251, 260, 626, 737
NaeI GCCGGC 1 cut(s) 155
NciI CCSGG 1 cut(s) 671
NcoI CCATGG 1 cut(s) 630
NdeII GATC 4 cut(s) 283, 323, 555, 749
NgoMIV GCCGGC 1 cut(s) 153
NlaIII CATG 6 cut(s) 263, 452, 634, 655, 682, 695
NlaIV GGNNCC 3 cut(s) 298, 361, 649
NsiI ATGCAT 1 cut(s) 684
NspI RCATGY 3 cut(s) 263, 452, 682
PaeI GCATGC 1 cut(s) 682
PaeR7I CTCGAG 1 cut(s) 331
PdiI GCCGGC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 784
PflFI GACNNNGTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 356
PfoI TCCNGGA 1 cut(s) 541
PkrI GCNGC 6 cut(s) 36, 54, 197, 200, 253, 306
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PpuMI RGGWCCY 2 cut(s) 297, 494
Psp5II RGGWCCY 2 cut(s) 297, 494
Psp6I CCWGG 4 cut(s) 160, 204, 349, 541
PspGI CCWGG 4 cut(s) 160, 204, 349, 541
PspN4I GGNNCC 3 cut(s) 298, 361, 649
PspPI GGNCC 3 cut(s) 106, 297, 494
PspPPI RGGWCCY 2 cut(s) 297, 494
PsyI GACNNNGTC 1 cut(s) 119
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 453
SacII CCGCGG 1 cut(s) 199
SaqAI TTAA 3 cut(s) 87, 266, 549
SatI GCNGC 6 cut(s) 35, 53, 196, 199, 252, 305
Sau3AI GATC 4 cut(s) 283, 323, 555, 749
Sau96I GGNCC 3 cut(s) 106, 297, 494
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 5 cut(s) 162, 206, 351, 543, 671
SexAI ACCWGGT 2 cut(s) 204, 349
SfaNI GCATC 1 cut(s) 570
SfcI CTRYAG 1 cut(s) 756
Sfr274I CTCGAG 1 cut(s) 331
Sfr303I CCGCGG 1 cut(s) 199
SgrAI CRCCGGYG 1 cut(s) 153
SgrBI CCGCGG 1 cut(s) 199
SinI GGWCC 2 cut(s) 297, 494
SlaI CTCGAG 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 2 cut(s) 182, 331
SmoI CTYRAG 2 cut(s) 182, 331
SphI GCATGC 1 cut(s) 682
Sse9I AATT 8 cut(s) 135, 246, 278, 499, 560, 609, 709, 766
SsiI CCGC 7 cut(s) 11, 35, 50, 53, 151, 196, 198
SspMI CTAG 4 cut(s) 321, 491, 762, 814
StyD4I CCNGG 5 cut(s) 160, 204, 349, 541, 669
StyI CCWWGG 3 cut(s) 406, 630, 715
TaiI ACGT 3 cut(s) 123, 227, 416
TaqI TCGA 2 cut(s) 168, 332
TasI AATT 8 cut(s) 135, 246, 278, 499, 560, 609, 709, 766
TatI WGTACW 1 cut(s) 186
TauI GCSGC 4 cut(s) 37, 55, 198, 201
TfiI GAWTC 1 cut(s) 784
Tru1I TTAA 3 cut(s) 87, 266, 549
Tru9I TTAA 3 cut(s) 87, 266, 549
TseI GCWGC 2 cut(s) 251, 304
TspDTI ATGAA 3 cut(s) 469, 528, 651
Tth111I GACNNNGTC 1 cut(s) 119
Van91I CCANNNNNTGG 1 cut(s) 356
VpaK11BI GGWCC 2 cut(s) 297, 494
XapI RAATTY 2 cut(s) 135, 278
XceI RCATGY 3 cut(s) 263, 452, 682
XhoI CTCGAG 1 cut(s) 331
XspI CTAG 4 cut(s) 321, 491, 762, 814
ZraI GACGTC 1 cut(s) 121
Zsp2I ATGCAT 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.