FvH4_6g33120

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008567
Physical Location & Seq
Reverse (-)
26197041 .. 26200525
3485 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33120.t2

Sequence Viewer

Length: 828 bp
ATGGCTCACCCGCCCTACGACCCCTACTACCTGCCGCAACCACAGCAACCGGACTACAGCAACCGGAGCGTGATTAACACGCTTTTCGTCTCGGGCCTCCCTGACGACGTCAAGGCGCGTGAAATTCACAACCTCTTCCGCCGCCGCCCTGGCTTCGACTCCTGCCAGCTCAAGTACACCGGCCGCGGCAACCAGGTCGTTGCTTTCGCTACGTTTTTCAATCACCAATCGGCAATTGCAGCTCTACATGCTTTGAATGGTGTCAAATTTGATCCTCAAACTGGGTCATTGCTGCATATTGAACTCGCTAGATCAAACTCAAGAAGGAAGCGTAAACCAGGTGGTGGAGCCTATGTGGTTATAGATAAAAGGAGTAAAAAAGAGGATGATAACCAAGGAACATCCAGCGATGATGGAGACAGTGAATCCGAAGAAGCATCTGAAACTGACAATCACGATTCTGGGGAAAAGAGTGAATTAGCTAACACAAAGAGCACCGAGGCAGTGCTGGATCCTGATAATTCTATTGCTGCTGTAAATGAGCAATCTGAAAAGCATACTGATCAAGGACAATGTTCCACTCTGTTCATTGCAAATCTAGGTCCTAATTGCACCGAAGATGAACTGAAGCAAGTTTTGTCTCAATATCCCGGATTTAATGTGATCAAATTGCGTGCTAAAGGTGGGATGCCAGTTGCTTTTGCCGATTTTGAGGAAATTGAACAAGCTAATAAAGCCATGGATGAACTTCGTGGCACCATGTTACCATCTTCAGACCGTGGTGGCATGCATATAGAATATGCAAGATCTAAAATGAGGAAGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

276

Amino Acids

30.43

Weight (kDa)

5.66

Isoelectric Point (pI)

68.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 118 - 180 2.2e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 111
Acc36I ACCTGC 1 cut(s) 39
AccB1I GGYRCC 1 cut(s) 755
AccB7I CCANNNNNTGG 1 cut(s) 344
AccII CGCG 2 cut(s) 118, 186
AciI CCGC 7 cut(s) 11, 35, 139, 142, 145, 184, 186
AclWI GGATC 3 cut(s) 266, 506, 519
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 2 cut(s) 123, 266
AcuI CTGAAG 2 cut(s) 647, 756
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 281, 344
AgsI TTSAA 4 cut(s) 220, 256, 302, 722
AjnI CCWGG 3 cut(s) 148, 192, 337
AluBI AGCT 4 cut(s) 169, 242, 482, 728
AluI AGCT 4 cut(s) 169, 242, 482, 728
Alw21I GWGCWC 1 cut(s) 497
Alw26I GTCTC 3 cut(s) 94, 411, 645
AlwI GGATC 3 cut(s) 266, 506, 519
Ama87I CYCGRG 1 cut(s) 91
AoxI GGCC 2 cut(s) 94, 181
ApeKI GCWGC 3 cut(s) 239, 292, 530
ApoI RAATTY 2 cut(s) 123, 266
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 2 cut(s) 94, 602
AsuC2I CCSGG 1 cut(s) 651
AsuHPI GGTGA 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 91
AvaII GGWCC 1 cut(s) 602
BamHI GGATCC 1 cut(s) 511
BanI GGYRCC 1 cut(s) 755
Bbv12I GWGCWC 1 cut(s) 497
BbvI GCAGC 3 cut(s) 251, 279, 517
BccI CCATC 2 cut(s) 407, 775
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BciT130I CCWGG 3 cut(s) 150, 194, 339
BclI TGATCA 2 cut(s) 562, 663
BcnI CCSGG 1 cut(s) 651
BcoDI GTCTC 3 cut(s) 94, 411, 645
BfaI CTAG 2 cut(s) 309, 599
BfmI CTRYAG 1 cut(s) 55
BfuAI ACCTGC 1 cut(s) 39
BglI GCCNNNNNGGC 1 cut(s) 150
BglII AGATCT 1 cut(s) 806
BisI GCNGC 8 cut(s) 35, 142, 145, 184, 187, 240, 293, 531
BlsI GCNGC 8 cut(s) 36, 143, 146, 185, 188, 241, 294, 532
Bme1390I CCNGG 4 cut(s) 150, 194, 339, 651
Bme18I GGWCC 1 cut(s) 602
BmeT110I CYCGRG 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 94, 602
BmiI GGNNCC 3 cut(s) 349, 513, 757
BmrFI CCNGG 4 cut(s) 150, 194, 339, 651
BmrI ACTGGG 1 cut(s) 291
BmsI GCATC 2 cut(s) 446, 678
BmuI ACTGGG 1 cut(s) 291
BpuEI CTTGAG 2 cut(s) 155, 304
BpuMI CCSGG 1 cut(s) 651
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 6 cut(s) 148, 184, 394, 498, 738, 778
BsaWI WCCGGW 2 cut(s) 49, 63
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 344
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 286, 692
Bse3DI GCAATG 2 cut(s) 287, 588
BseBI CCWGG 3 cut(s) 150, 194, 339
BseDI CCNNGG 6 cut(s) 148, 184, 394, 498, 738, 778
BseGI GGATG 4 cut(s) 391, 401, 693, 748
BseLI CCNNNNNNNGG 2 cut(s) 281, 344
BseMI GCAATG 2 cut(s) 287, 588
BseNI ACTGG 2 cut(s) 286, 692
BseX3I CGGCCG 1 cut(s) 181
BseXI GCAGC 3 cut(s) 251, 279, 517
Bsh1236I CGCG 2 cut(s) 118, 186
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 2 cut(s) 96, 183
BshNI GGYRCC 1 cut(s) 755
BsiEI CGRYCG 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 497
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 4 cut(s) 50, 64, 180, 651
BslI CCNNNNNNNGG 2 cut(s) 281, 344
BsmAI GTCTC 3 cut(s) 94, 411, 645
BsmBI CGTCTC 1 cut(s) 94
BsnI GGCC 2 cut(s) 96, 183
BsoBI CYCGRG 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 497
Bsp143I GATC 6 cut(s) 271, 311, 511, 562, 663, 806
Bsp19I CCATGG 1 cut(s) 738
BspACI CCGC 7 cut(s) 11, 35, 139, 142, 145, 184, 186
BspANI GGCC 2 cut(s) 96, 183
BspFNI CGCG 2 cut(s) 118, 186
BspLI GGNNCC 3 cut(s) 349, 513, 757
BspMI ACCTGC 1 cut(s) 39
BspPI GGATC 3 cut(s) 266, 506, 519
BspT107I GGYRCC 1 cut(s) 755
BsrDI GCAATG 2 cut(s) 287, 588
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 2 cut(s) 286, 692
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 6 cut(s) 148, 184, 394, 498, 738, 778
BssMI GATC 6 cut(s) 271, 311, 511, 562, 663, 806
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 2 cut(s) 394, 738
Bst2UI CCWGG 3 cut(s) 150, 194, 339
Bst4CI ACNGT 2 cut(s) 422, 779
Bst6I CTCTTC 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 167, 675, 788
BstDSI CCRYGG 3 cut(s) 184, 738, 778
BstF5I GGATG 4 cut(s) 391, 401, 693, 748
BstFNI CGCG 2 cut(s) 118, 186
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 6 cut(s) 274, 314, 514, 565, 666, 809
BstMAI GTCTC 3 cut(s) 94, 411, 645
BstMBI GATC 6 cut(s) 271, 311, 511, 562, 663, 806
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 6 cut(s) 43, 66, 150, 239, 248, 734
BstNI CCWGG 3 cut(s) 150, 194, 339
BstNSI RCATGY 2 cut(s) 251, 790
BstSCI CCNGG 4 cut(s) 148, 192, 337, 649
BstSFI CTRYAG 1 cut(s) 55
BstUI CGCG 2 cut(s) 118, 186
BstV1I GCAGC 3 cut(s) 251, 279, 517
BstX2I RGATCY 2 cut(s) 511, 806
BstYI RGATCY 2 cut(s) 511, 806
BstZI CGGCCG 1 cut(s) 181
BsuRI GGCC 2 cut(s) 96, 183
BtgI CCRYGG 3 cut(s) 184, 738, 778
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 4 cut(s) 391, 401, 693, 748
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 2 cut(s) 427, 510
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 3 cut(s) 167, 675, 788
CfoI GCGC 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 94, 602
Cfr42I CCGCGG 1 cut(s) 187
CsiI ACCWGGT 2 cut(s) 192, 337
Csp6I GTAC 1 cut(s) 175
CviAII CATG 4 cut(s) 248, 739, 760, 787
CviQI GTAC 1 cut(s) 175
DpnI GATC 6 cut(s) 273, 313, 513, 564, 665, 808
DpnII GATC 6 cut(s) 271, 311, 511, 562, 663, 806
EaeI YGGCCR 1 cut(s) 181
EagI CGGCCG 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
EciI GGCGGA 1 cut(s) 128
EclXI CGGCCG 1 cut(s) 181
Eco130I CCWWGG 2 cut(s) 394, 738
Eco47I GGWCC 1 cut(s) 602
Eco52I CGGCCG 1 cut(s) 181
Eco57I CTGAAG 2 cut(s) 647, 756
Eco88I CYCGRG 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 602
EcoRII CCWGG 3 cut(s) 148, 192, 337
EcoT14I CCWWGG 2 cut(s) 394, 738
EcoT22I ATGCAT 1 cut(s) 792
ErhI CCWWGG 2 cut(s) 394, 738
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 4 cut(s) 251, 742, 763, 790
FatI CATG 4 cut(s) 247, 738, 759, 786
FauI CCCGC 1 cut(s) 18
FbaI TGATCA 2 cut(s) 562, 663
Fnu4HI GCNGC 8 cut(s) 35, 142, 145, 184, 187, 240, 293, 531
FokI GGATG 4 cut(s) 388, 398, 700, 755
Fsp4HI GCNGC 8 cut(s) 35, 142, 145, 184, 187, 240, 293, 531
FspBI CTAG 2 cut(s) 309, 599
GlaI GCGC 1 cut(s) 117
GluI GCNGC 8 cut(s) 35, 142, 145, 184, 187, 240, 293, 531
HaeIII GGCC 2 cut(s) 96, 183
HapII CCGG 4 cut(s) 50, 64, 180, 651
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 4 cut(s) 251, 742, 763, 790
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HinfI GANTC 3 cut(s) 158, 425, 458
HpaII CCGG 4 cut(s) 50, 64, 180, 651
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 2 cut(s) 177, 335
Hpy188I TCNGA 4 cut(s) 430, 442, 550, 775
Hpy188III TCNNGA 3 cut(s) 321, 455, 515
Hpy8I GTNNAC 2 cut(s) 177, 335
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 318
HpyCH4III ACNGT 2 cut(s) 422, 779
HpyCH4IV ACGT 2 cut(s) 108, 212
HpyCH4V TGCA 6 cut(s) 239, 295, 593, 612, 790, 803
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 66, 150, 239, 248, 734
HpySE526I ACGT 2 cut(s) 108, 212
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 4 cut(s) 251, 742, 763, 790
HspAI GCGC 1 cut(s) 116
Ksp22I TGATCA 2 cut(s) 562, 663
KspI CCGCGG 1 cut(s) 187
Kzo9I GATC 6 cut(s) 271, 311, 511, 562, 663, 806
LmnI GCTCC 2 cut(s) 66, 347
Lsp1109I GCAGC 3 cut(s) 251, 279, 517
LweI GCATC 2 cut(s) 446, 678
MabI ACCWGGT 2 cut(s) 192, 337
MaeI CTAG 2 cut(s) 309, 599
MaeII ACGT 2 cut(s) 108, 212
MaeIII GTNAC 1 cut(s) 762
MalI GATC 6 cut(s) 273, 313, 513, 564, 665, 808
MboI GATC 6 cut(s) 271, 311, 511, 562, 663, 806
MboII GAAGA 4 cut(s) 127, 443, 629, 762
MfeI CAATTG 1 cut(s) 234
MflI RGATCY 2 cut(s) 511, 806
MhlI GDGCHC 1 cut(s) 497
MluCI AATT 8 cut(s) 123, 234, 266, 476, 520, 607, 668, 717
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 7 cut(s) 107, 143, 285, 376, 493, 706, 810
Mph1103I ATGCAT 1 cut(s) 792
MseI TTAA 2 cut(s) 75, 657
MspA1I CMGCKG 1 cut(s) 186
MspI CCGG 4 cut(s) 50, 64, 180, 651
MspR9I CCNGG 4 cut(s) 150, 194, 339, 651
MunI CAATTG 1 cut(s) 234
MvaI CCWGG 3 cut(s) 150, 194, 339
MvnI CGCG 2 cut(s) 118, 186
MwoI GCNNNNNNNGC 6 cut(s) 43, 66, 150, 239, 248, 734
NciI CCSGG 1 cut(s) 651
NcoI CCATGG 1 cut(s) 738
NdeII GATC 6 cut(s) 271, 311, 511, 562, 663, 806
NlaIII CATG 4 cut(s) 251, 742, 763, 790
NlaIV GGNNCC 3 cut(s) 349, 513, 757
NsiI ATGCAT 1 cut(s) 792
NspI RCATGY 2 cut(s) 251, 790
PaeI GCATGC 1 cut(s) 790
PfeI GAWTC 2 cut(s) 425, 458
PflFI GACNNNGTC 1 cut(s) 107
PflMI CCANNNNNTGG 1 cut(s) 344
PfoI TCCNGGA 1 cut(s) 649
PkrI GCNGC 8 cut(s) 36, 143, 146, 185, 188, 241, 294, 532
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PpuMI RGGWCCY 1 cut(s) 602
Psp5II RGGWCCY 1 cut(s) 602
Psp6I CCWGG 3 cut(s) 148, 192, 337
PspGI CCWGG 3 cut(s) 148, 192, 337
PspN4I GGNNCC 3 cut(s) 349, 513, 757
PspPI GGNCC 2 cut(s) 94, 602
PspPPI RGGWCCY 1 cut(s) 602
PsuI RGATCY 2 cut(s) 511, 806
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SacII CCGCGG 1 cut(s) 187
SaqAI TTAA 2 cut(s) 75, 657
SatI GCNGC 8 cut(s) 35, 142, 145, 184, 187, 240, 293, 531
Sau3AI GATC 6 cut(s) 271, 311, 511, 562, 663, 806
Sau96I GGNCC 2 cut(s) 94, 602
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 4 cut(s) 150, 194, 339, 651
SduI GDGCHC 1 cut(s) 497
SexAI ACCWGGT 2 cut(s) 192, 337
SfaNI GCATC 2 cut(s) 446, 678
SfcI CTRYAG 1 cut(s) 55
Sfr303I CCGCGG 1 cut(s) 187
SgrBI CCGCGG 1 cut(s) 187
SinI GGWCC 1 cut(s) 602
SmlI CTYRAG 2 cut(s) 170, 319
SmoI CTYRAG 2 cut(s) 170, 319
SphI GCATGC 1 cut(s) 790
Sse9I AATT 8 cut(s) 123, 234, 266, 476, 520, 607, 668, 717
SsiI CCGC 7 cut(s) 11, 35, 139, 142, 145, 184, 186
SspMI CTAG 2 cut(s) 309, 599
StyD4I CCNGG 4 cut(s) 148, 192, 337, 649
StyI CCWWGG 2 cut(s) 394, 738
TaaI ACNGT 2 cut(s) 422, 779
TaiI ACGT 2 cut(s) 111, 215
TaqI TCGA 1 cut(s) 156
TasI AATT 8 cut(s) 123, 234, 266, 476, 520, 607, 668, 717
TatI WGTACW 1 cut(s) 174
TauI GCSGC 5 cut(s) 37, 144, 147, 186, 189
TfiI GAWTC 2 cut(s) 425, 458
Tru1I TTAA 2 cut(s) 75, 657
Tru9I TTAA 2 cut(s) 75, 657
TscAI CASTG 2 cut(s) 427, 510
TseI GCWGC 3 cut(s) 239, 292, 530
TspDTI ATGAA 3 cut(s) 577, 636, 759
TspRI CASTG 2 cut(s) 427, 510
Tth111I GACNNNGTC 1 cut(s) 107
Van91I CCANNNNNTGG 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 602
XapI RAATTY 2 cut(s) 123, 266
XceI RCATGY 2 cut(s) 251, 790
XspI CTAG 2 cut(s) 309, 599
ZraI GACGTC 1 cut(s) 109
Zsp2I ATGCAT 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.