Rh2CG414100

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008567
Physical Location & Seq
Reverse (-)
56604863 .. 56607892
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG414100.1

Sequence Viewer

Length: 660 bp
ATGGCTCATCCGCCCTACGACCCCTACTACCTGCCGCAACCACAGCAACCGCCGCCACTACCGGATTACAGCGACCGGAGCGTGATTAACACGCTTTTCGTCTCGGGCCTCCCCGACGACGTCAAGGCGCGTGAAATTCACAACCTCTTCCGCCGGCGACCTGGCTTCGACTCTTGCCAGCTCAAGTACACCGGCCGCGGCAACCAGGTCGTTGCTTTTGCTACGTTTTTCAATCACCAATCGGCAATTGCAGCTCTACATGCGTTAAATGGTGTCAAATTTGATCCTCAAACTGGGTCCTTGCTGCATATTGAACTTGCTAGATCAAACTCGAGAAGGAAGCGTAAACCAGGTAGTGGAGCCTATGTGGTTATAGATAAAAGGAGTAAAAAAGAGGATGATAACCAAGGAACGTCAAGCGATGATGGAGACAGTGAATCTGAAGAACCATCTGAAACTGACAATCATGATTCTGGCGAGAAGAGTGATTTAGCAAACACAAAGAGTAGTGAGGCAGTGGTGGATTCTGATATTGCTGTAGCTGCCGTAAATGAGCAATCCGAAAAGCATGTTGATGGAGGACAATGTTCCACTCTGTTCATTGCAAATCTAGGTCCTAATTGCACCGAAGATGAACTGAAGCAAGTTTTGTGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

219

Amino Acids

24.03

Weight (kDa)

5.12

Isoelectric Point (pI)

63.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 32 - 95 8.6e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
Acc36I ACCTGC 1 cut(s) 39
AccB7I CCANNNNNTGG 1 cut(s) 356
AccII CGCG 2 cut(s) 130, 198
AciI CCGC 7 cut(s) 11, 35, 50, 53, 151, 196, 198
AclWI GGATC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 2 cut(s) 135, 278
AcuI CTGAAG 2 cut(s) 462, 659
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 293, 356
AgsI TTSAA 2 cut(s) 232, 314
AjnI CCWGG 3 cut(s) 160, 204, 349
AluBI AGCT 3 cut(s) 181, 254, 542
AluI AGCT 3 cut(s) 181, 254, 542
Alw26I GTCTC 2 cut(s) 106, 423
AlwI GGATC 1 cut(s) 278
Ama87I CYCGRG 2 cut(s) 103, 331
AoxI GGCC 2 cut(s) 106, 193
ApeKI GCWGC 3 cut(s) 251, 304, 542
ApoI RAATTY 2 cut(s) 135, 278
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 3 cut(s) 106, 297, 614
AsuHPI GGTGA 1 cut(s) 227
AvaI CYCGRG 2 cut(s) 103, 331
AvaII GGWCC 2 cut(s) 297, 614
BbvI GCAGC 3 cut(s) 263, 291, 529
BccI CCATC 3 cut(s) 419, 457, 569
BceAI ACGGC 1 cut(s) 530
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BciT130I CCWGG 3 cut(s) 162, 206, 351
BcoDI GTCTC 2 cut(s) 106, 423
BfaI CTAG 2 cut(s) 321, 611
BfmI CTRYAG 1 cut(s) 537
BfuAI ACCTGC 1 cut(s) 39
BisI GCNGC 7 cut(s) 35, 53, 196, 199, 252, 305, 543
BlsI GCNGC 7 cut(s) 36, 54, 197, 200, 253, 306, 544
Bme1390I CCNGG 3 cut(s) 162, 206, 351
Bme18I GGWCC 2 cut(s) 297, 614
BmeT110I CYCGRG 2 cut(s) 103, 331
BmgT120I GGNCC 3 cut(s) 106, 297, 614
BmiI GGNNCC 2 cut(s) 298, 361
BmrFI CCNGG 3 cut(s) 162, 206, 351
BmrI ACTGGG 1 cut(s) 303
BmuI ACTGGG 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 196, 406
BsaWI WCCGGW 2 cut(s) 61, 75
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 293, 356
Bse118I RCCGGY 2 cut(s) 153, 191
Bse1I ACTGG 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 600
BseBI CCWGG 3 cut(s) 162, 206, 351
BseDI CCNNGG 2 cut(s) 196, 406
BseGI GGATG 2 cut(s) 7, 403
BseLI CCNNNNNNNGG 2 cut(s) 293, 356
BseMI GCAATG 1 cut(s) 600
BseNI ACTGG 1 cut(s) 298
BseX3I CGGCCG 1 cut(s) 193
BseXI GCAGC 3 cut(s) 263, 291, 529
Bsh1236I CGCG 2 cut(s) 130, 198
Bsh1285I CGRYCG 2 cut(s) 76, 196
BshFI GGCC 2 cut(s) 108, 195
BsiEI CGRYCG 2 cut(s) 76, 196
BsiHKCI CYCGRG 2 cut(s) 103, 331
BsiSI CCGG 4 cut(s) 62, 76, 154, 192
BslI CCNNNNNNNGG 2 cut(s) 293, 356
BsmAI GTCTC 2 cut(s) 106, 423
BsmBI CGTCTC 1 cut(s) 106
BsnI GGCC 2 cut(s) 108, 195
BsoBI CYCGRG 2 cut(s) 103, 331
Bsp143I GATC 2 cut(s) 283, 323
BspACI CCGC 7 cut(s) 11, 35, 50, 53, 151, 196, 198
BspANI GGCC 2 cut(s) 108, 195
BspFNI CGCG 2 cut(s) 130, 198
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 2 cut(s) 298, 361
BspMI ACCTGC 1 cut(s) 39
BspPI GGATC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 600
BsrFI RCCGGY 2 cut(s) 153, 191
BsrI ACTGG 1 cut(s) 298
BssAI RCCGGY 2 cut(s) 153, 191
BssECI CCNNGG 2 cut(s) 196, 406
BssMI GATC 2 cut(s) 283, 323
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 406
Bst2UI CCWGG 3 cut(s) 162, 206, 351
Bst4CI ACNGT 1 cut(s) 434
Bst6I CTCTTC 2 cut(s) 152, 476
BstACI GRCGYC 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 155, 179
BstDSI CCRYGG 1 cut(s) 196
BstF5I GGATG 2 cut(s) 7, 403
BstFNI CGCG 2 cut(s) 130, 198
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 2 cut(s) 286, 326
BstMAI GTCTC 2 cut(s) 106, 423
BstMBI GATC 2 cut(s) 283, 323
BstMCI CGRYCG 2 cut(s) 76, 196
BstMWI GCNNNNNNNGC 6 cut(s) 43, 52, 78, 251, 260, 542
BstNI CCWGG 3 cut(s) 162, 206, 351
BstNSI RCATGY 2 cut(s) 263, 572
BstSCI CCNGG 3 cut(s) 160, 204, 349
BstSFI CTRYAG 1 cut(s) 537
BstUI CGCG 2 cut(s) 130, 198
BstV1I GCAGC 3 cut(s) 263, 291, 529
BstZI CGGCCG 1 cut(s) 193
BsuRI GGCC 2 cut(s) 108, 195
BtgI CCRYGG 1 cut(s) 196
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 2 cut(s) 7, 403
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 2 cut(s) 439, 522
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 155, 179
CciI TCATGA 1 cut(s) 466
CfoI GCGC 1 cut(s) 130
Cfr10I RCCGGY 2 cut(s) 153, 191
Cfr13I GGNCC 3 cut(s) 106, 297, 614
Cfr42I CCGCGG 1 cut(s) 199
CsiI ACCWGGT 2 cut(s) 204, 349
Csp6I GTAC 1 cut(s) 187
CviAII CATG 3 cut(s) 260, 467, 569
CviJI RGCY 8 cut(s) 5, 108, 165, 181, 195, 254, 362, 542
CviKI_1 RGCY 8 cut(s) 5, 108, 165, 181, 195, 254, 362, 542
CviQI GTAC 1 cut(s) 187
DpnI GATC 2 cut(s) 285, 325
DpnII GATC 2 cut(s) 283, 323
EaeI YGGCCR 1 cut(s) 193
EagI CGGCCG 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 152, 476
EarI CTCTTC 2 cut(s) 152, 476
EciI GGCGGA 1 cut(s) 140
EclXI CGGCCG 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 406
Eco47I GGWCC 2 cut(s) 297, 614
Eco52I CGGCCG 1 cut(s) 193
Eco57I CTGAAG 2 cut(s) 462, 659
Eco88I CYCGRG 2 cut(s) 103, 331
EcoO109I RGGNCCY 2 cut(s) 297, 614
EcoRII CCWGG 3 cut(s) 160, 204, 349
EcoT14I CCWWGG 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 406
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 3 cut(s) 263, 470, 572
FaiI YATR 6 cut(s) 261, 309, 366, 374, 468, 570
FatI CATG 3 cut(s) 259, 466, 568
Fnu4HI GCNGC 7 cut(s) 35, 53, 196, 199, 252, 305, 543
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 7 cut(s) 35, 53, 196, 199, 252, 305, 543
FspBI CTAG 2 cut(s) 321, 611
GlaI GCGC 1 cut(s) 129
GluI GCNGC 7 cut(s) 35, 53, 196, 199, 252, 305, 543
HaeIII GGCC 2 cut(s) 108, 195
HapII CCGG 4 cut(s) 62, 76, 154, 192
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 3 cut(s) 263, 470, 572
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HinfI GANTC 4 cut(s) 170, 437, 470, 524
HpaII CCGG 4 cut(s) 62, 76, 154, 192
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 189, 347
Hpy188I TCNGA 4 cut(s) 442, 454, 529, 562
Hpy188III TCNNGA 2 cut(s) 333, 467
Hpy8I GTNNAC 2 cut(s) 189, 347
Hpy99I CGWCG 2 cut(s) 119, 122
HpyAV CCTTC 1 cut(s) 330
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4IV ACGT 3 cut(s) 120, 224, 413
HpyCH4V TGCA 4 cut(s) 251, 307, 605, 624
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 52, 78, 251, 260, 542
HpySE526I ACGT 3 cut(s) 120, 224, 413
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 3 cut(s) 263, 470, 572
HspAI GCGC 1 cut(s) 128
KroI GCCGGC 1 cut(s) 153
KroNI GCCGGC 1 cut(s) 155
KspI CCGCGG 1 cut(s) 199
Kzo9I GATC 2 cut(s) 283, 323
LmnI GCTCC 2 cut(s) 78, 359
Lsp1109I GCAGC 3 cut(s) 263, 291, 529
MabI ACCWGGT 2 cut(s) 204, 349
MaeI CTAG 2 cut(s) 321, 611
MaeII ACGT 3 cut(s) 120, 224, 413
MalI GATC 2 cut(s) 285, 325
MboI GATC 2 cut(s) 283, 323
MboII GAAGA 4 cut(s) 139, 455, 493, 641
MfeI CAATTG 1 cut(s) 246
MluCI AATT 4 cut(s) 135, 246, 278, 619
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 6 cut(s) 119, 155, 297, 388, 505, 572
MreI CGCCGGCG 1 cut(s) 153
MroNI GCCGGC 1 cut(s) 153
MseI TTAA 2 cut(s) 87, 266
MslI CAYNNNNRTG 1 cut(s) 573
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 4 cut(s) 62, 76, 154, 192
MspR9I CCNGG 3 cut(s) 162, 206, 351
MunI CAATTG 1 cut(s) 246
MvaI CCWGG 3 cut(s) 162, 206, 351
MvnI CGCG 2 cut(s) 130, 198
MwoI GCNNNNNNNGC 6 cut(s) 43, 52, 78, 251, 260, 542
NaeI GCCGGC 1 cut(s) 155
NdeII GATC 2 cut(s) 283, 323
NgoMIV GCCGGC 1 cut(s) 153
NlaIII CATG 3 cut(s) 263, 470, 572
NlaIV GGNNCC 2 cut(s) 298, 361
NspI RCATGY 2 cut(s) 263, 572
PaeR7I CTCGAG 1 cut(s) 331
PagI TCATGA 1 cut(s) 466
PdiI GCCGGC 1 cut(s) 155
PfeI GAWTC 3 cut(s) 437, 470, 524
PflFI GACNNNGTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 356
PkrI GCNGC 7 cut(s) 36, 54, 197, 200, 253, 306, 544
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PpuMI RGGWCCY 2 cut(s) 297, 614
Psp5II RGGWCCY 2 cut(s) 297, 614
Psp6I CCWGG 3 cut(s) 160, 204, 349
PspGI CCWGG 3 cut(s) 160, 204, 349
PspN4I GGNNCC 2 cut(s) 298, 361
PspPI GGNCC 3 cut(s) 106, 297, 614
PspPPI RGGWCCY 2 cut(s) 297, 614
PsyI GACNNNGTC 1 cut(s) 119
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 573
SacII CCGCGG 1 cut(s) 199
SaqAI TTAA 2 cut(s) 87, 266
SatI GCNGC 7 cut(s) 35, 53, 196, 199, 252, 305, 543
Sau3AI GATC 2 cut(s) 283, 323
Sau96I GGNCC 3 cut(s) 106, 297, 614
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 162, 206, 351
SexAI ACCWGGT 2 cut(s) 204, 349
SfcI CTRYAG 1 cut(s) 537
Sfr274I CTCGAG 1 cut(s) 331
Sfr303I CCGCGG 1 cut(s) 199
SgrAI CRCCGGYG 1 cut(s) 153
SgrBI CCGCGG 1 cut(s) 199
SinI GGWCC 2 cut(s) 297, 614
SlaI CTCGAG 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 2 cut(s) 182, 331
SmoI CTYRAG 2 cut(s) 182, 331
Sse9I AATT 4 cut(s) 135, 246, 278, 619
SsiI CCGC 7 cut(s) 11, 35, 50, 53, 151, 196, 198
SspMI CTAG 2 cut(s) 321, 611
StyD4I CCNGG 3 cut(s) 160, 204, 349
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 1 cut(s) 434
TaiI ACGT 3 cut(s) 123, 227, 416
TaqI TCGA 2 cut(s) 168, 332
TasI AATT 4 cut(s) 135, 246, 278, 619
TatI WGTACW 1 cut(s) 186
TauI GCSGC 4 cut(s) 37, 55, 198, 201
TfiI GAWTC 3 cut(s) 437, 470, 524
Tru1I TTAA 2 cut(s) 87, 266
Tru9I TTAA 2 cut(s) 87, 266
TscAI CASTG 2 cut(s) 439, 522
TseI GCWGC 3 cut(s) 251, 304, 542
TspDTI ATGAA 2 cut(s) 589, 648
TspRI CASTG 2 cut(s) 439, 522
Tth111I GACNNNGTC 1 cut(s) 119
Van91I CCANNNNNTGG 1 cut(s) 356
VpaK11BI GGWCC 2 cut(s) 297, 614
XapI RAATTY 2 cut(s) 135, 278
XceI RCATGY 2 cut(s) 263, 572
XhoI CTCGAG 1 cut(s) 331
XspI CTAG 2 cut(s) 321, 611
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.