pycom09g11190

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0008567
Physical Location & Seq
Forward (+)
9376973 .. 9380117
3145 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g11190.10

Sequence Viewer

Length: 849 bp
ATGGCTCATCCACCGTACGATCCCTACTATCTACAGCAGCAACCGCAACCAGTACCGCCACCACAACCACAGGACTACAGTGACCGGAGCGCGATCAACACGCTCTTCGTCTCCGGCCTCCCGGACGACGTCAAAGCGCGTGAGATTCACAACCTCTTCCGCCGGCGCCCGGGCTTCGACTCTTGCCAGCTCAAGTACACGGGTCGCGGCAACCTGGTCGTTGCTTTTGCTACGTTCTTCAATCACCAGTCAGCAATGGCAGCCCTGCATTCGTTAAATGGTGTGAAATTTGATCCTCAAACTGGGACCCTGCTGCATATTGAACTTGCCAGATCAAACTCAAGAAGGAAGCGTAAACCAGGTAGTGGAGCTTATGTTGTTATAGATAAAAGAACTAAAAAAGAGGCCGATACCCAAGAAACGTCTAGTGATGATGGAGAAAGTGAATCTGATGAACCATCTGAAACTGACAATCATGATTCTGGGGACAAGAGTGATCTAGCAACCGCGAAGAGCGGTGAGACTGCGGTGGATTCTGAGAATGCTGTAGCTGCTGTAAATGACCAACCCGAAAAGCATGTTGATGCAGGACAATGTTCTACTCTGTTCATTGCAAATCTAGGTCCAAATTGCACGGAAGATGAGTTGAAGCAAGTTCTATCTCAGTATCCTGGATTCAACGTGATCAAACTGCGTGCTAAAGGTGGAATGCCAGTTGCATTTGCTGATTTTGAGGAAATTGAACAAGCTAATAAAGCCATGGATGAACTTCGTGGAAGCTCGTTACCATCTTCAGACAGGGGCGGCATGCATATAGAATATGCAAGGTCTAAAATGAGGAAGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

283

Amino Acids

31.02

Weight (kDa)

5.53

Isoelectric Point (pI)

68.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 165
AccB7I CCANNNNNTGG 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 516
AccII CGCG 4 cut(s) 92, 139, 207, 509
AciI CCGC 8 cut(s) 44, 56, 160, 207, 507, 516, 527, 804
AclWI GGATC 2 cut(s) 14, 287
AcsI RAATTY 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 777
AcyI GRCGYC 2 cut(s) 129, 166
AfaI GTAC 3 cut(s) 17, 54, 197
AfiI CCNNNNNNNGG 3 cut(s) 169, 302, 365
AgsI TTSAA 5 cut(s) 241, 323, 649, 679, 743
AjnI CCWGG 3 cut(s) 213, 358, 670
AluBI AGCT 5 cut(s) 190, 371, 551, 749, 780
AluI AGCT 5 cut(s) 190, 371, 551, 749, 780
Alw26I GTCTC 2 cut(s) 115, 515
AlwI GGATC 2 cut(s) 14, 287
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 2 cut(s) 115, 405
ApeKI GCWGC 4 cut(s) 37, 260, 313, 551
ApoI RAATTY 1 cut(s) 287
AspLEI GCGC 3 cut(s) 92, 139, 168
AspS9I GGNCC 2 cut(s) 306, 623
AsuC2I CCSGG 3 cut(s) 122, 170, 171
AsuHPI GGTGA 2 cut(s) 236, 530
AvaI CYCGRG 1 cut(s) 169
AvaII GGWCC 2 cut(s) 306, 623
BanI GGYRCC 1 cut(s) 165
BbvI GCAGC 4 cut(s) 49, 272, 300, 538
BccI CCATC 3 cut(s) 428, 466, 796
BcgI CGANNNNNNTGC 2 cut(s) 199, 233
BciT130I CCWGG 3 cut(s) 215, 360, 672
BciVI GTATCC 1 cut(s) 678
BclI TGATCA 1 cut(s) 684
BcnI CCSGG 3 cut(s) 122, 170, 171
BcoDI GTCTC 2 cut(s) 115, 515
BfaI CTAG 3 cut(s) 426, 500, 620
BfmI CTRYAG 3 cut(s) 32, 76, 546
BfoI RGCGCY 1 cut(s) 169
BfuI GTATCC 1 cut(s) 678
BisI GCNGC 6 cut(s) 38, 208, 261, 314, 552, 805
BlsI GCNGC 6 cut(s) 39, 209, 262, 315, 553, 806
Bme1390I CCNGG 6 cut(s) 122, 170, 171, 215, 360, 672
Bme18I GGWCC 2 cut(s) 306, 623
BmeT110I CYCGRG 1 cut(s) 169
BmgT120I GGNCC 2 cut(s) 306, 623
BmiI GGNNCC 3 cut(s) 167, 307, 308
BmrFI CCNGG 6 cut(s) 122, 170, 171, 215, 360, 672
BmrI ACTGGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 574
BmuI ACTGGG 1 cut(s) 312
BpuEI CTTGAG 2 cut(s) 176, 325
BpuMI CCSGG 3 cut(s) 122, 170, 171
BsaHI GRCGYC 2 cut(s) 129, 166
BsaJI CCNNGG 2 cut(s) 169, 759
BsaWI WCCGGW 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 302, 365
Bse118I RCCGGY 1 cut(s) 162
Bse1I ACTGG 4 cut(s) 50, 247, 307, 713
Bse3DI GCAATG 2 cut(s) 261, 609
BseBI CCWGG 3 cut(s) 215, 360, 672
BseDI CCNNGG 2 cut(s) 169, 759
BseGI GGATG 2 cut(s) 7, 769
BseLI CCNNNNNNNGG 3 cut(s) 169, 302, 365
BseMI GCAATG 2 cut(s) 261, 609
BseMII CTCAG 2 cut(s) 528, 677
BseNI ACTGG 4 cut(s) 50, 247, 307, 713
BseXI GCAGC 4 cut(s) 49, 272, 300, 538
Bsh1236I CGCG 4 cut(s) 92, 139, 207, 509
BshFI GGCC 2 cut(s) 117, 407
BshNI GGYRCC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 5 cut(s) 85, 114, 122, 163, 170
BsiWI CGTACG 1 cut(s) 15
BslFI GGGAC 2 cut(s) 319, 500
BslI CCNNNNNNNGG 3 cut(s) 169, 302, 365
BsmAI GTCTC 2 cut(s) 115, 515
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 2 cut(s) 319, 500
BsmI GAATGC 3 cut(s) 268, 547, 714
BsnI GGCC 2 cut(s) 117, 407
BsoBI CYCGRG 1 cut(s) 169
Bsp143I GATC 6 cut(s) 19, 93, 292, 332, 496, 684
Bsp19I CCATGG 1 cut(s) 759
BspACI CCGC 8 cut(s) 44, 56, 160, 207, 507, 516, 527, 804
BspANI GGCC 2 cut(s) 117, 407
BspCNI CTCAG 2 cut(s) 529, 676
BspFNI CGCG 4 cut(s) 92, 139, 207, 509
BspHI TCATGA 1 cut(s) 475
BspLI GGNNCC 3 cut(s) 167, 307, 308
BspPI GGATC 2 cut(s) 14, 287
BspQI GCTCTTC 2 cut(s) 110, 506
BspT107I GGYRCC 1 cut(s) 165
BsrBI CCGCTC 1 cut(s) 516
BsrDI GCAATG 2 cut(s) 261, 609
BsrFI RCCGGY 1 cut(s) 162
BsrI ACTGG 4 cut(s) 50, 247, 307, 713
BssAI RCCGGY 1 cut(s) 162
BssECI CCNNGG 2 cut(s) 169, 759
BssMI GATC 6 cut(s) 19, 93, 292, 332, 496, 684
BssNI GRCGYC 2 cut(s) 129, 166
BssT1I CCWWGG 1 cut(s) 759
Bst2UI CCWGG 3 cut(s) 215, 360, 672
Bst4CI ACNGT 2 cut(s) 15, 80
Bst6I CTCTTC 3 cut(s) 110, 161, 506
BstACI GRCGYC 2 cut(s) 129, 166
BstC8I GCNNGC 4 cut(s) 164, 188, 696, 809
BstDEI CTNAG 2 cut(s) 537, 663
BstDSI CCRYGG 1 cut(s) 759
BstF5I GGATG 2 cut(s) 7, 769
BstFNI CGCG 4 cut(s) 92, 139, 207, 509
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 3 cut(s) 92, 139, 168
BstKTI GATC 6 cut(s) 22, 96, 295, 335, 499, 687
BstMAI GTCTC 2 cut(s) 115, 515
BstMBI GATC 6 cut(s) 19, 93, 292, 332, 496, 684
BstMWI GCNNNNNNNGC 4 cut(s) 43, 260, 551, 755
BstNI CCWGG 3 cut(s) 215, 360, 672
BstNSI RCATGY 2 cut(s) 581, 811
BstSCI CCNGG 6 cut(s) 120, 168, 169, 213, 358, 670
BstSFI CTRYAG 3 cut(s) 32, 76, 546
BstUI CGCG 4 cut(s) 92, 139, 207, 509
BstV1I GCAGC 4 cut(s) 49, 272, 300, 538
BsuI GTATCC 1 cut(s) 678
BsuRI GGCC 2 cut(s) 117, 407
BtgI CCRYGG 1 cut(s) 759
BtsCI GGATG 2 cut(s) 7, 769
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 4 cut(s) 164, 188, 696, 809
CciI TCATGA 1 cut(s) 475
CfoI GCGC 3 cut(s) 92, 139, 168
Cfr10I RCCGGY 1 cut(s) 162
Cfr13I GGNCC 2 cut(s) 306, 623
Cfr9I CCCGGG 1 cut(s) 169
CsiI ACCWGGT 2 cut(s) 213, 358
Csp6I GTAC 3 cut(s) 16, 53, 196
CviAII CATG 4 cut(s) 476, 578, 760, 808
CviQI GTAC 3 cut(s) 16, 53, 196
DdeI CTNAG 2 cut(s) 537, 663
DinI GGCGCC 1 cut(s) 167
DpnI GATC 6 cut(s) 21, 95, 294, 334, 498, 686
DpnII GATC 6 cut(s) 19, 93, 292, 332, 496, 684
Eam1104I CTCTTC 3 cut(s) 110, 161, 506
EarI CTCTTC 3 cut(s) 110, 161, 506
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 759
Eco47I GGWCC 2 cut(s) 306, 623
Eco57I CTGAAG 1 cut(s) 777
Eco88I CYCGRG 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 306
EcoRII CCWGG 3 cut(s) 213, 358, 670
EcoT14I CCWWGG 1 cut(s) 759
EcoT22I ATGCAT 1 cut(s) 813
EgeI GGCGCC 1 cut(s) 167
EheI GGCGCC 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 759
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 4 cut(s) 479, 581, 763, 811
FaqI GGGAC 2 cut(s) 319, 500
FatI CATG 4 cut(s) 475, 577, 759, 807
FbaI TGATCA 1 cut(s) 684
Fnu4HI GCNGC 6 cut(s) 38, 208, 261, 314, 552, 805
FokI GGATG 1 cut(s) 776
Fsp4HI GCNGC 6 cut(s) 38, 208, 261, 314, 552, 805
FspBI CTAG 3 cut(s) 426, 500, 620
GlaI GCGC 3 cut(s) 91, 138, 167
GluI GCNGC 6 cut(s) 38, 208, 261, 314, 552, 805
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 2 cut(s) 117, 407
HapII CCGG 5 cut(s) 85, 114, 122, 163, 170
HhaI GCGC 3 cut(s) 92, 139, 168
Hin1I GRCGYC 2 cut(s) 129, 166
Hin1II CATG 4 cut(s) 479, 581, 763, 811
Hin6I GCGC 3 cut(s) 90, 137, 166
HinP1I GCGC 3 cut(s) 90, 137, 166
HinfI GANTC 6 cut(s) 145, 179, 446, 479, 533, 675
HpaII CCGG 5 cut(s) 85, 114, 122, 163, 170
HphI GGTGA 2 cut(s) 236, 530
Hpy166II GTNNAC 2 cut(s) 198, 356
Hpy188I TCNGA 4 cut(s) 451, 463, 538, 796
Hpy188III TCNNGA 2 cut(s) 342, 476
Hpy8I GTNNAC 2 cut(s) 198, 356
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 339
HpyCH4III ACNGT 2 cut(s) 15, 80
HpyCH4IV ACGT 4 cut(s) 129, 233, 422, 681
HpyCH4V TGCA 8 cut(s) 268, 316, 587, 614, 633, 719, 811, 824
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 260, 551, 755
HpyF3I CTNAG 2 cut(s) 537, 663
HpySE526I ACGT 4 cut(s) 129, 233, 422, 681
Hsp92I GRCGYC 2 cut(s) 129, 166
Hsp92II CATG 4 cut(s) 479, 581, 763, 811
HspAI GCGC 3 cut(s) 90, 137, 166
KasI GGCGCC 1 cut(s) 165
KflI GGGWCCC 1 cut(s) 306
KroI GCCGGC 1 cut(s) 162
KroNI GCCGGC 1 cut(s) 164
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 6 cut(s) 19, 93, 292, 332, 496, 684
LguI GCTCTTC 2 cut(s) 110, 506
LmnI GCTCC 2 cut(s) 87, 368
Lsp1109I GCAGC 4 cut(s) 49, 272, 300, 538
LweI GCATC 1 cut(s) 574
MabI ACCWGGT 2 cut(s) 213, 358
MaeI CTAG 3 cut(s) 426, 500, 620
MaeII ACGT 4 cut(s) 129, 233, 422, 681
MaeIII GTNAC 2 cut(s) 80, 783
MalI GATC 6 cut(s) 21, 95, 294, 334, 498, 686
MbiI CCGCTC 1 cut(s) 516
MboI GATC 6 cut(s) 19, 93, 292, 332, 496, 684
MboII GAAGA 6 cut(s) 97, 148, 229, 523, 650, 783
MluCI AATT 3 cut(s) 287, 628, 738
Mly113I GGCGCC 1 cut(s) 166
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 6 cut(s) 128, 164, 306, 397, 727, 831
Mph1103I ATGCAT 1 cut(s) 813
MreI CGCCGGCG 1 cut(s) 162
MroNI GCCGGC 1 cut(s) 162
MseI TTAA 1 cut(s) 275
MslI CAYNNNNRTG 1 cut(s) 582
MspI CCGG 5 cut(s) 85, 114, 122, 163, 170
MspR9I CCNGG 6 cut(s) 122, 170, 171, 215, 360, 672
Mva1269I GAATGC 3 cut(s) 268, 547, 714
MvaI CCWGG 3 cut(s) 215, 360, 672
MvnI CGCG 4 cut(s) 92, 139, 207, 509
MwoI GCNNNNNNNGC 4 cut(s) 43, 260, 551, 755
NaeI GCCGGC 1 cut(s) 164
NarI GGCGCC 1 cut(s) 166
NciI CCSGG 3 cut(s) 122, 170, 171
NcoI CCATGG 1 cut(s) 759
NdeII GATC 6 cut(s) 19, 93, 292, 332, 496, 684
NgoMIV GCCGGC 1 cut(s) 162
NlaIII CATG 4 cut(s) 479, 581, 763, 811
NlaIV GGNNCC 3 cut(s) 167, 307, 308
NmuCI GTSAC 1 cut(s) 80
NsiI ATGCAT 1 cut(s) 813
NspI RCATGY 2 cut(s) 581, 811
PaeI GCATGC 1 cut(s) 811
PagI TCATGA 1 cut(s) 475
PciSI GCTCTTC 2 cut(s) 110, 506
PctI GAATGC 3 cut(s) 268, 547, 714
PdiI GCCGGC 1 cut(s) 164
PfeI GAWTC 5 cut(s) 145, 446, 479, 533, 675
Pfl23II CGTACG 1 cut(s) 15
PflFI GACNNNGTC 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 365
PfoI TCCNGGA 2 cut(s) 120, 670
PkrI GCNGC 6 cut(s) 39, 209, 262, 315, 553, 806
PleI GAGTC 1 cut(s) 173
PluTI GGCGCC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 173
PpuMI RGGWCCY 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 306
Psp6I CCWGG 3 cut(s) 213, 358, 670
PspGI CCWGG 3 cut(s) 213, 358, 670
PspLI CGTACG 1 cut(s) 15
PspN4I GGNNCC 3 cut(s) 167, 307, 308
PspPI GGNCC 2 cut(s) 306, 623
PspPPI RGGWCCY 1 cut(s) 306
PsyI GACNNNGTC 1 cut(s) 128
RsaI GTAC 3 cut(s) 17, 54, 197
RsaNI GTAC 3 cut(s) 16, 53, 196
RseI CAYNNNNRTG 1 cut(s) 582
SapI GCTCTTC 2 cut(s) 110, 506
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 6 cut(s) 38, 208, 261, 314, 552, 805
Sau3AI GATC 6 cut(s) 19, 93, 292, 332, 496, 684
Sau96I GGNCC 2 cut(s) 306, 623
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 6 cut(s) 122, 170, 171, 215, 360, 672
SexAI ACCWGGT 2 cut(s) 213, 358
SfaNI GCATC 1 cut(s) 574
SfcI CTRYAG 3 cut(s) 32, 76, 546
SfoI GGCGCC 1 cut(s) 167
SgrAI CRCCGGYG 1 cut(s) 162
SinI GGWCC 2 cut(s) 306, 623
SmaI CCCGGG 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 582
SmlI CTYRAG 2 cut(s) 191, 340
SmoI CTYRAG 2 cut(s) 191, 340
SphI GCATGC 1 cut(s) 811
SrfI GCCCGGGC 1 cut(s) 171
Sse9I AATT 3 cut(s) 287, 628, 738
SsiI CCGC 8 cut(s) 44, 56, 160, 207, 507, 516, 527, 804
SspDI GGCGCC 1 cut(s) 165
SspMI CTAG 3 cut(s) 426, 500, 620
StyD4I CCNGG 6 cut(s) 120, 168, 169, 213, 358, 670
StyI CCWWGG 1 cut(s) 759
TaaI ACNGT 2 cut(s) 15, 80
TaiI ACGT 4 cut(s) 132, 236, 425, 684
TaqI TCGA 1 cut(s) 177
TasI AATT 3 cut(s) 287, 628, 738
TatI WGTACW 1 cut(s) 195
TauI GCSGC 2 cut(s) 210, 807
TfiI GAWTC 5 cut(s) 145, 446, 479, 533, 675
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 4 cut(s) 37, 260, 313, 551
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 3 cut(s) 468, 598, 780
TspGWI ACGGA 1 cut(s) 650
TspMI CCCGGG 1 cut(s) 169
TspRI CASTG 1 cut(s) 85
Tth111I GACNNNGTC 1 cut(s) 128
Van91I CCANNNNNTGG 1 cut(s) 365
VpaK11BI GGWCC 2 cut(s) 306, 623
XapI RAATTY 1 cut(s) 287
XceI RCATGY 2 cut(s) 581, 811
XmaI CCCGGG 1 cut(s) 169
XspI CTAG 3 cut(s) 426, 500, 620
ZraI GACGTC 1 cut(s) 130
Zsp2I ATGCAT 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.