Prupe.3G051400_v2.0.a1

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0008567
Physical Location & Seq
Forward (+)
3617958 .. 3621853
3896 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G051400.2

Sequence Viewer

Length: 843 bp
ATGGCTCATCCGCCGCACGATCCCTACTACCTGCAGCAGCAACCACCGCTGCCGCCACAGCAACAGGATTTCAGTGACCGGAGTGTGATCAACACGCTCTTCGTCTCGGGCCTCCCCGACGACGTCAAGGCGCGTGAGATTCACAACCTCTTCCGCCGCCGCCCTGGCTTCGACTCTTGCCAGCTCAAGTACACCGGCCGCGGCAACCAGGTCGTTGCTTTTGCTACGTTTTTCAATCACCAATCAGCAATGGCAGCTCTGCATTCGTTAAATGGTGTGAAATTTGATCCTCAAACTGGGTCCCTGCTGCATATTGAACTGGCCAGATCAAACTCAAGAAGGAAGCGTAAACCAGGTAGTGGAGCCTATGTTGTTATAGATAAAAGAACTAAAAAAGAGGCTGATACCCAAGAAACATCTAGCGATGATGGAGACAGCGAAACTGATGAACCATCTGAAACTGAAAATAATGATTCTGGCGACAAGACTGAATTAGAGACAACAAAGAGCGCTGAGACAGCAGTGGATTCTGACAATGCTGTAGCTACTGTAAATGAACAATCGGAAAAGCATGTTGACGGAGGACCATGTTCCACTCTGTTCATTGCAAATCTAGGTCCAAATTGCACTGAAGATGAACTGAAGCAAGTTCTATCTAAGTACCCTGGATTCAATGTGATCAAATTGCGTGCTAAAGGTGGAATGCCAGTTGCATTTGCTGATTTTGAGGAAATTGAACAAGCCAATAAAGCCATGGACGAACTTCGTGGCAACTCGTTACCATCTTCAGACAGGGGTGGCATGCATATAGAATATGCAAGGTCTAAGATGAGGAAATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

281

Amino Acids

30.95

Weight (kDa)

5.54

Isoelectric Point (pI)

67.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 126
Acc36I ACCTGC 1 cut(s) 39
AccB7I CCANNNNNTGG 1 cut(s) 359
AccII CGCG 2 cut(s) 133, 201
AciI CCGC 9 cut(s) 11, 14, 47, 53, 154, 157, 160, 199, 201
AclWI GGATC 2 cut(s) 14, 281
AcoI YGGCCR 2 cut(s) 196, 321
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 3 cut(s) 651, 662, 771
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 2 cut(s) 191, 662
AfeI AGCGCT 1 cut(s) 511
AfiI CCNNNNNNNGG 2 cut(s) 296, 359
AgsI TTSAA 4 cut(s) 235, 317, 673, 737
AjnI CCWGG 4 cut(s) 163, 207, 352, 664
AluBI AGCT 3 cut(s) 184, 257, 545
AluI AGCT 3 cut(s) 184, 257, 545
Alw26I GTCTC 4 cut(s) 109, 426, 491, 509
AlwI GGATC 2 cut(s) 14, 281
Ama87I CYCGRG 1 cut(s) 106
Aor51HI AGCGCT 1 cut(s) 511
AoxI GGCC 3 cut(s) 109, 196, 321
ApeKI GCWGC 5 cut(s) 34, 37, 49, 254, 307
ApoI RAATTY 1 cut(s) 281
AspLEI GCGC 2 cut(s) 133, 512
AspS9I GGNCC 4 cut(s) 109, 300, 584, 617
AsuHPI GGTGA 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 106
AvaII GGWCC 3 cut(s) 300, 584, 617
BalI TGGCCA 1 cut(s) 323
BbvI GCAGC 5 cut(s) 36, 46, 49, 266, 294
BccI CCATC 3 cut(s) 422, 460, 790
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BciT130I CCWGG 4 cut(s) 165, 209, 354, 666
BclI TGATCA 2 cut(s) 87, 678
BcoDI GTCTC 4 cut(s) 109, 426, 491, 509
BfaI CTAG 2 cut(s) 420, 614
BfmI CTRYAG 2 cut(s) 32, 540
BfoI RGCGCY 1 cut(s) 513
BfuAI ACCTGC 1 cut(s) 39
BglI GCCNNNNNGGC 1 cut(s) 165
Bme1390I CCNGG 4 cut(s) 165, 209, 354, 666
Bme18I GGWCC 3 cut(s) 300, 584, 617
BmeT110I CYCGRG 1 cut(s) 106
BmgT120I GGNCC 4 cut(s) 109, 300, 584, 617
BmiI GGNNCC 3 cut(s) 301, 302, 364
BmrFI CCNGG 4 cut(s) 165, 209, 354, 666
BmrI ACTGGG 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 306
BpuEI CTTGAG 2 cut(s) 170, 319
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 4 cut(s) 163, 199, 664, 753
BsaWI WCCGGW 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 359
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 3 cut(s) 301, 324, 707
Bse3DI GCAATG 2 cut(s) 255, 603
BseBI CCWGG 4 cut(s) 165, 209, 354, 666
BseDI CCNNGG 4 cut(s) 163, 199, 664, 753
BseGI GGATG 1 cut(s) 7
BseLI CCNNNNNNNGG 2 cut(s) 296, 359
BseMI GCAATG 2 cut(s) 255, 603
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 3 cut(s) 301, 324, 707
BseX3I CGGCCG 1 cut(s) 196
BseXI GCAGC 5 cut(s) 36, 46, 49, 266, 294
Bsh1236I CGCG 2 cut(s) 133, 201
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 3 cut(s) 111, 198, 323
BsiEI CGRYCG 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 2 cut(s) 79, 195
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 2 cut(s) 296, 359
BsmAI GTCTC 4 cut(s) 109, 426, 491, 509
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 286
BsmI GAATGC 2 cut(s) 262, 708
BsnI GGCC 3 cut(s) 111, 198, 323
BsoBI CYCGRG 1 cut(s) 106
Bsp143I GATC 5 cut(s) 19, 87, 286, 326, 678
Bsp19I CCATGG 1 cut(s) 753
BspACI CCGC 9 cut(s) 11, 14, 47, 53, 154, 157, 160, 199, 201
BspANI GGCC 3 cut(s) 111, 198, 323
BspCNI CTCAG 1 cut(s) 505
BspFNI CGCG 2 cut(s) 133, 201
BspLI GGNNCC 3 cut(s) 301, 302, 364
BspMAI CTGCAG 1 cut(s) 36
BspMI ACCTGC 1 cut(s) 39
BspPI GGATC 2 cut(s) 14, 281
BspQI GCTCTTC 1 cut(s) 104
BsrDI GCAATG 2 cut(s) 255, 603
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 3 cut(s) 301, 324, 707
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 4 cut(s) 163, 199, 664, 753
BssMI GATC 5 cut(s) 19, 87, 286, 326, 678
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 753
Bst2UI CCWGG 4 cut(s) 165, 209, 354, 666
Bst4CI ACNGT 1 cut(s) 550
Bst6I CTCTTC 2 cut(s) 104, 155
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 3 cut(s) 182, 690, 803
BstDEI CTNAG 3 cut(s) 513, 657, 825
BstDSI CCRYGG 2 cut(s) 199, 753
BstF5I GGATG 1 cut(s) 7
BstFNI CGCG 2 cut(s) 133, 201
BstH2I RGCGCY 1 cut(s) 513
BstHHI GCGC 2 cut(s) 133, 512
BstKTI GATC 5 cut(s) 22, 90, 289, 329, 681
BstMAI GTCTC 4 cut(s) 109, 426, 491, 509
BstMBI GATC 5 cut(s) 19, 87, 286, 326, 678
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 6 cut(s) 46, 58, 165, 254, 518, 749
BstNI CCWGG 4 cut(s) 165, 209, 354, 666
BstNSI RCATGY 2 cut(s) 575, 805
BstSCI CCNGG 4 cut(s) 163, 207, 352, 664
BstSFI CTRYAG 2 cut(s) 32, 540
BstUI CGCG 2 cut(s) 133, 201
BstV1I GCAGC 5 cut(s) 36, 46, 49, 266, 294
BstZI CGGCCG 1 cut(s) 196
BsuRI GGCC 3 cut(s) 111, 198, 323
BtgI CCRYGG 2 cut(s) 199, 753
BtgZI GCGATG 1 cut(s) 438
BtsCI GGATG 1 cut(s) 7
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 3 cut(s) 79, 528, 627
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 3 cut(s) 182, 690, 803
CfoI GCGC 2 cut(s) 133, 512
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 4 cut(s) 109, 300, 584, 617
Cfr42I CCGCGG 1 cut(s) 202
CsiI ACCWGGT 2 cut(s) 207, 352
Csp6I GTAC 2 cut(s) 190, 661
CviAII CATG 4 cut(s) 572, 588, 754, 802
CviQI GTAC 2 cut(s) 190, 661
DdeI CTNAG 3 cut(s) 513, 657, 825
DpnI GATC 5 cut(s) 21, 89, 288, 328, 680
DpnII GATC 5 cut(s) 19, 87, 286, 326, 678
EaeI YGGCCR 2 cut(s) 196, 321
EagI CGGCCG 1 cut(s) 196
Eam1104I CTCTTC 2 cut(s) 104, 155
EarI CTCTTC 2 cut(s) 104, 155
EciI GGCGGA 1 cut(s) 143
EclXI CGGCCG 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 753
Eco47I GGWCC 3 cut(s) 300, 584, 617
Eco47III AGCGCT 1 cut(s) 511
Eco52I CGGCCG 1 cut(s) 196
Eco57I CTGAAG 3 cut(s) 651, 662, 771
Eco88I CYCGRG 1 cut(s) 106
EcoO109I RGGNCCY 1 cut(s) 300
EcoRII CCWGG 4 cut(s) 163, 207, 352, 664
EcoT14I CCWWGG 1 cut(s) 753
EcoT22I ATGCAT 1 cut(s) 807
ErhI CCWWGG 1 cut(s) 753
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 4 cut(s) 575, 591, 757, 805
FaqI GGGAC 1 cut(s) 286
FatI CATG 4 cut(s) 571, 587, 753, 801
FbaI TGATCA 2 cut(s) 87, 678
FspBI CTAG 2 cut(s) 420, 614
GlaI GCGC 2 cut(s) 132, 511
HaeII RGCGCY 1 cut(s) 513
HaeIII GGCC 3 cut(s) 111, 198, 323
HapII CCGG 2 cut(s) 79, 195
HhaI GCGC 2 cut(s) 133, 512
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 4 cut(s) 575, 591, 757, 805
Hin6I GCGC 2 cut(s) 131, 510
HinP1I GCGC 2 cut(s) 131, 510
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 5 cut(s) 139, 173, 473, 527, 669
HpaII CCGG 2 cut(s) 79, 195
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 3 cut(s) 192, 350, 577
Hpy188I TCNGA 4 cut(s) 457, 532, 565, 790
Hpy188III TCNNGA 1 cut(s) 336
Hpy8I GTNNAC 3 cut(s) 192, 350, 577
Hpy99I CGWCG 2 cut(s) 122, 125
HpyAV CCTTC 1 cut(s) 333
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4IV ACGT 2 cut(s) 123, 227
HpyCH4V TGCA 8 cut(s) 34, 262, 310, 608, 627, 713, 805, 818
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 58, 165, 254, 518, 749
HpyF3I CTNAG 3 cut(s) 513, 657, 825
HpySE526I ACGT 2 cut(s) 123, 227
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 4 cut(s) 575, 591, 757, 805
HspAI GCGC 2 cut(s) 131, 510
KflI GGGWCCC 1 cut(s) 300
Ksp22I TGATCA 2 cut(s) 87, 678
KspI CCGCGG 1 cut(s) 202
Kzo9I GATC 5 cut(s) 19, 87, 286, 326, 678
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 1 cut(s) 362
Lsp1109I GCAGC 5 cut(s) 36, 46, 49, 266, 294
MabI ACCWGGT 2 cut(s) 207, 352
MaeI CTAG 2 cut(s) 420, 614
MaeII ACGT 2 cut(s) 123, 227
MaeIII GTNAC 2 cut(s) 74, 777
MalI GATC 5 cut(s) 21, 89, 288, 328, 680
MboI GATC 5 cut(s) 19, 87, 286, 326, 678
MboII GAAGA 4 cut(s) 91, 142, 644, 777
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 5 cut(s) 281, 491, 622, 683, 732
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 7 cut(s) 122, 158, 300, 391, 575, 721, 825
Mox20I TGGCCA 1 cut(s) 323
Mph1103I ATGCAT 1 cut(s) 807
MscI TGGCCA 1 cut(s) 323
MseI TTAA 1 cut(s) 269
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 2 cut(s) 49, 201
MspI CCGG 2 cut(s) 79, 195
MspR9I CCNGG 4 cut(s) 165, 209, 354, 666
Mva1269I GAATGC 2 cut(s) 262, 708
MvaI CCWGG 4 cut(s) 165, 209, 354, 666
MvnI CGCG 2 cut(s) 133, 201
MwoI GCNNNNNNNGC 6 cut(s) 46, 58, 165, 254, 518, 749
NcoI CCATGG 1 cut(s) 753
NdeII GATC 5 cut(s) 19, 87, 286, 326, 678
NlaIII CATG 4 cut(s) 575, 591, 757, 805
NlaIV GGNNCC 3 cut(s) 301, 302, 364
NmuCI GTSAC 1 cut(s) 74
NsiI ATGCAT 1 cut(s) 807
NspI RCATGY 2 cut(s) 575, 805
PaeI GCATGC 1 cut(s) 805
PciSI GCTCTTC 1 cut(s) 104
PctI GAATGC 2 cut(s) 262, 708
PfeI GAWTC 4 cut(s) 139, 473, 527, 669
PflFI GACNNNGTC 1 cut(s) 122
PflMI CCANNNNNTGG 1 cut(s) 359
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PpuMI RGGWCCY 1 cut(s) 300
Psp5II RGGWCCY 1 cut(s) 300
Psp6I CCWGG 4 cut(s) 163, 207, 352, 664
PspGI CCWGG 4 cut(s) 163, 207, 352, 664
PspN4I GGNNCC 3 cut(s) 301, 302, 364
PspPI GGNCC 4 cut(s) 109, 300, 584, 617
PspPPI RGGWCCY 1 cut(s) 300
PstI CTGCAG 1 cut(s) 36
PsyI GACNNNGTC 1 cut(s) 122
RsaI GTAC 2 cut(s) 191, 662
RsaNI GTAC 2 cut(s) 190, 661
SacII CCGCGG 1 cut(s) 202
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 269
Sau3AI GATC 5 cut(s) 19, 87, 286, 326, 678
Sau96I GGNCC 4 cut(s) 109, 300, 584, 617
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 4 cut(s) 165, 209, 354, 666
SexAI ACCWGGT 2 cut(s) 207, 352
SfcI CTRYAG 2 cut(s) 32, 540
Sfr303I CCGCGG 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 202
SinI GGWCC 3 cut(s) 300, 584, 617
SmlI CTYRAG 2 cut(s) 185, 334
SmoI CTYRAG 2 cut(s) 185, 334
SphI GCATGC 1 cut(s) 805
Sse9I AATT 5 cut(s) 281, 491, 622, 683, 732
SsiI CCGC 9 cut(s) 11, 14, 47, 53, 154, 157, 160, 199, 201
SspMI CTAG 2 cut(s) 420, 614
StyD4I CCNGG 4 cut(s) 163, 207, 352, 664
StyI CCWWGG 1 cut(s) 753
TaaI ACNGT 1 cut(s) 550
TaiI ACGT 2 cut(s) 126, 230
TaqI TCGA 1 cut(s) 171
TasI AATT 5 cut(s) 281, 491, 622, 683, 732
TatI WGTACW 1 cut(s) 189
TauI GCSGC 6 cut(s) 16, 55, 159, 162, 201, 204
TfiI GAWTC 4 cut(s) 139, 473, 527, 669
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 3 cut(s) 79, 528, 634
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 5 cut(s) 34, 37, 49, 254, 307
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 4 cut(s) 462, 570, 592, 651
TspGWI ACGGA 1 cut(s) 594
TspRI CASTG 3 cut(s) 79, 528, 634
Tth111I GACNNNGTC 1 cut(s) 122
Van91I CCANNNNNTGG 1 cut(s) 359
VpaK11BI GGWCC 3 cut(s) 300, 584, 617
XapI RAATTY 1 cut(s) 281
XceI RCATGY 2 cut(s) 575, 805
XcmI CCANNNNNNNNNTGG 1 cut(s) 751
XspI CTAG 2 cut(s) 420, 614
ZraI GACGTC 1 cut(s) 124
Zsp2I ATGCAT 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.