AT3G13800
ERF Family

Beta-lactamase superfamily domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005743
Physical Location & Seq
Forward (+)
4538328 .. 4541823
3496 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13800.3

Sequence Viewer

Length: 1086 bp
ATGGCGGCTATGTCAGCGGTTCTGTCTCTGGGTTTAGGAACACTCCGCCCTTCGCATCGTTCCTTGTCCTGTTTCGATTCCCTCCGGCACCACCAGACATCTTTTCTCCGTTGCCACCAAAGTCTCATCTCTAGAAATACGACGAGGTCTCCGCTCAACAAGATTCTTCAGGCTTGCCTTCAATCCAATTCTGCAAATGGTGATGCTTTGGTGTCATCATCCGATGAAAGTTCTGAGATTGTATTTATGGGTACCGGAACCAGTGAAGGGATTCCTCGTGTCAGCTGCCTCACTAATCCTTTGAAAACATGTTCGGTATGCACAAAAGCAACAGAACCAGGAAACAGAAATAGGAGACTTAACACCAGCATTCTTGTTCGGTACATTAGACCATCCGGAACAAGTAACATCCTCATTGATTGTGGCAAGTTCTTCTACCATAGTGCCCTTCGATGGTTTCCCACCTTCGGGCTAAGAACACTTGATGCAGTTGTAATTACTCATTCTCATGCTGACGCAATTGGAGGTCTTGATGATCTTCGTGATTGGACAAACAATGTCCAACCTCACATTCCAATTTACACTGCTATACGTGATCTCGAGGTGATGAAGAAGACCCATTATTACTTGGTTGATACAAGTGTCATCATACCCGGAGCTGCAGTCTCAGAGTTGGAGTTTAAAGTCATACACGAGGACCAGCCATTTGTGGTAAACGATCTGAAGATCACCCCATTACCTGTATGGCATGGAAGTAACTACCGTTCCCTTGGTTTCCGCTTTGGTAATGTCTGCTACATAAGCGATGTCAGTGACATACCGGAAGAAACCTACCCGCTCCTTAAAGACTGTGATCTCCTAATTATGGATGCTTTGAGGCCTGACCGGTCTTCAGCAACACACTTTGGCCTCCCAAGGGCGTTAGAGGAAGTTCGGAAAATCAAACCAAAAAGAACCCTTTTCACCGGAATGATGCATTTGATGGACCACGAGAAGGTGAGCGAAGAACTGGAGAAACTTAGGAACACAGAAGGCCTCGATGTCCAACTGAGCTACGATGGTCTTCGTGTACCAATCTCAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lactamase_B Lactamase_B_2

Protein Analysis

361

Amino Acids

40.38

Weight (kDa)

7.22

Isoelectric Point (pI)

57.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B PF00753 39 - 113 4.2e-09 Metallo-beta-lactamase superfamily
Anti-Pycsar_Apyc1 PF23023 51 - 220 1.8e-09 Anti-Pycsar protein Apyc1
Lactamase_B_2 PF12706 54 - 241 1.2e-26 Beta-lactamase superfamily domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 251
AccB1I GGYRCC 2 cut(s) 87, 251
AccBSI CCGCTC 2 cut(s) 154, 838
AccIII TCCGGA 1 cut(s) 395
AciI CCGC 6 cut(s) 5, 17, 46, 152, 778, 836
AcuI CTGAAG 3 cut(s) 152, 743, 876
AfaI GTAC 3 cut(s) 253, 383, 1071
AfiI CCNNNNNNNGG 7 cut(s) 267, 453, 467, 468, 865, 916, 994
AflIII ACRYGT 1 cut(s) 308
AgeI ACCGGT 1 cut(s) 885
AgsI TTSAA 2 cut(s) 182, 304
AjnI CCWGG 1 cut(s) 337
AjuI GAANNNNNNNTTGG 2 cut(s) 555, 587
AluBI AGCT 3 cut(s) 285, 659, 1053
AluI AGCT 3 cut(s) 285, 659, 1053
Alw26I GTCTC 5 cut(s) 30, 128, 153, 349, 670
Ama87I CYCGRG 1 cut(s) 599
Aor13HI TCCGGA 1 cut(s) 395
AoxI GGCC 3 cut(s) 878, 907, 1033
ApeKI GCWGC 2 cut(s) 285, 659
ArsI GACNNNNNNTTYG 2 cut(s) 689, 721
AsiGI ACCGGT 1 cut(s) 885
Asp700I GAANNNNTTC 1 cut(s) 270
Asp718I GGTACC 1 cut(s) 251
AspS9I GGNCC 2 cut(s) 697, 985
AsuC2I CCSGG 1 cut(s) 654
AsuHPI GGTGA 5 cut(s) 212, 616, 721, 955, 1009
AvaI CYCGRG 1 cut(s) 599
AvaII GGWCC 2 cut(s) 697, 985
BaeGI GKGCMC 1 cut(s) 448
BaeI ACNNNNGTAYC 2 cut(s) 627, 660
BanI GGYRCC 2 cut(s) 87, 251
BauI CACGAG 3 cut(s) 276, 692, 989
BbsI GAAGAC 3 cut(s) 620, 882, 1055
BbvI GCAGC 2 cut(s) 272, 646
BccI CCATC 4 cut(s) 400, 447, 976, 1052
BciT130I CCWGG 1 cut(s) 339
BcnI CCSGG 1 cut(s) 654
BcoDI GTCTC 5 cut(s) 30, 128, 153, 349, 670
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 660
BisI GCNGC 3 cut(s) 6, 286, 660
BlsI GCNGC 3 cut(s) 7, 287, 661
Bme1390I CCNGG 2 cut(s) 339, 654
Bme18I GGWCC 2 cut(s) 697, 985
BmeT110I CYCGRG 1 cut(s) 599
BmgT120I GGNCC 2 cut(s) 697, 985
BmiI GGNNCC 3 cut(s) 89, 253, 259
BmrFI CCNGG 2 cut(s) 339, 654
BmsI GCATC 5 cut(s) 64, 193, 475, 859, 963
BpiI GAAGAC 3 cut(s) 620, 882, 1055
BpmI CTGGAG 1 cut(s) 1031
BpuMI CCSGG 1 cut(s) 654
BsaAI YACGTR 1 cut(s) 593
BsaI GGTCTC 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 769, 914
BsaWI WCCGGW 5 cut(s) 254, 395, 820, 885, 965
BsaXI ACNNNNNCTCC 4 cut(s) 133, 163, 648, 678
Bsc4I CCNNNNNNNGG 7 cut(s) 267, 453, 467, 468, 865, 916, 994
Bse118I RCCGGY 1 cut(s) 885
Bse1I ACTGG 2 cut(s) 261, 1014
BseAI TCCGGA 1 cut(s) 395
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 769, 914
BseGI GGATG 4 cut(s) 218, 392, 408, 874
BseLI CCNNNNNNNGG 7 cut(s) 267, 453, 467, 468, 865, 916, 994
BseMII CTCAG 3 cut(s) 225, 681, 1040
BseNI ACTGG 2 cut(s) 261, 1014
BseSI GKGCMC 1 cut(s) 448
BseXI GCAGC 2 cut(s) 272, 646
BshFI GGCC 3 cut(s) 880, 909, 1035
BshNI GGYRCC 2 cut(s) 87, 251
BshTI ACCGGT 1 cut(s) 885
BsiHKCI CYCGRG 1 cut(s) 599
BsiSI CCGG 7 cut(s) 85, 255, 396, 654, 821, 886, 966
BslI CCNNNNNNNGG 7 cut(s) 267, 453, 467, 468, 865, 916, 994
BsmAI GTCTC 5 cut(s) 30, 128, 153, 349, 670
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 3 cut(s) 880, 909, 1035
Bso31I GGTCTC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 599
Bsp1286I GDGCHC 1 cut(s) 448
Bsp13I TCCGGA 1 cut(s) 395
Bsp143I GATC 5 cut(s) 535, 595, 718, 726, 853
BspACI CCGC 6 cut(s) 5, 17, 46, 152, 778, 836
BspANI GGCC 3 cut(s) 880, 909, 1035
BspCNI CTCAG 3 cut(s) 226, 680, 1041
BspEI TCCGGA 1 cut(s) 395
BspLI GGNNCC 3 cut(s) 89, 253, 259
BspMAI CTGCAG 1 cut(s) 664
BspT107I GGYRCC 2 cut(s) 87, 251
BspTNI GGTCTC 1 cut(s) 153
BsrBI CCGCTC 2 cut(s) 154, 838
BsrFI RCCGGY 1 cut(s) 885
BsrI ACTGG 2 cut(s) 261, 1014
BssAI RCCGGY 1 cut(s) 885
BssECI CCNNGG 2 cut(s) 769, 914
BssMI GATC 5 cut(s) 535, 595, 718, 726, 853
BssSI CACGAG 3 cut(s) 276, 692, 989
BssT1I CCWWGG 2 cut(s) 769, 914
Bst2BI CACGAG 3 cut(s) 276, 692, 989
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 2 cut(s) 764, 851
BstBAI YACGTR 1 cut(s) 593
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 5 cut(s) 234, 473, 667, 1019, 1049
BstF5I GGATG 4 cut(s) 218, 392, 408, 874
BstKTI GATC 5 cut(s) 538, 598, 721, 729, 856
BstMAI GTCTC 5 cut(s) 30, 128, 153, 349, 670
BstMBI GATC 5 cut(s) 535, 595, 718, 726, 853
BstMWI GCNNNNNNNGC 2 cut(s) 14, 801
BstNI CCWGG 1 cut(s) 339
BstNSI RCATGY 1 cut(s) 312
BstSCI CCNGG 2 cut(s) 337, 652
BstSFI CTRYAG 1 cut(s) 660
BstSLI GKGCMC 1 cut(s) 448
BstV1I GCAGC 2 cut(s) 272, 646
BstV2I GAAGAC 3 cut(s) 620, 882, 1055
BsuRI GGCC 3 cut(s) 880, 909, 1035
BtgZI GCGATG 1 cut(s) 819
BtsCI GGATG 4 cut(s) 218, 392, 408, 874
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 3 cut(s) 268, 582, 817
Cac8I GCNNGC 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 885
Cfr13I GGNCC 2 cut(s) 697, 985
CseI GACGC 1 cut(s) 524
Csp6I GTAC 3 cut(s) 252, 382, 1070
CspAI ACCGGT 1 cut(s) 885
CviAII CATG 3 cut(s) 309, 509, 749
CviQI GTAC 3 cut(s) 252, 382, 1070
DdeI CTNAG 5 cut(s) 234, 473, 667, 1019, 1049
DpnI GATC 5 cut(s) 537, 597, 720, 728, 855
DpnII GATC 5 cut(s) 535, 595, 718, 726, 853
DraI TTTAAA 1 cut(s) 682
EciI GGCGGA 1 cut(s) 35
Eco130I CCWWGG 2 cut(s) 769, 914
Eco147I AGGCCT 2 cut(s) 880, 1035
Eco31I GGTCTC 1 cut(s) 153
Eco47I GGWCC 2 cut(s) 697, 985
Eco57I CTGAAG 3 cut(s) 152, 743, 876
Eco88I CYCGRG 1 cut(s) 599
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 2 cut(s) 769, 914
EcoT22I ATGCAT 1 cut(s) 978
ErhI CCWWGG 2 cut(s) 769, 914
FaeI CATG 3 cut(s) 312, 512, 752
FatI CATG 3 cut(s) 308, 508, 748
FauI CCCGC 1 cut(s) 843
Fnu4HI GCNGC 3 cut(s) 6, 286, 660
FokI GGATG 4 cut(s) 205, 379, 395, 881
Fsp4HI GCNGC 3 cut(s) 6, 286, 660
FspBI CTAG 1 cut(s) 132
GluI GCNGC 3 cut(s) 6, 286, 660
GsuI CTGGAG 1 cut(s) 1031
HaeIII GGCC 3 cut(s) 880, 909, 1035
HapII CCGG 7 cut(s) 85, 255, 396, 654, 821, 886, 966
HgaI GACGC 1 cut(s) 524
Hin1II CATG 3 cut(s) 312, 512, 752
HinfI GANTC 3 cut(s) 77, 163, 271
HpaII CCGG 7 cut(s) 85, 255, 396, 654, 821, 886, 966
HphI GGTGA 5 cut(s) 212, 616, 721, 955, 1009
Hpy166II GTNNAC 2 cut(s) 715, 1070
Hpy188I TCNGA 5 cut(s) 223, 235, 670, 723, 936
Hpy188III TCNNGA 5 cut(s) 132, 396, 530, 542, 599
Hpy8I GTNNAC 2 cut(s) 715, 1070
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 7 cut(s) 60, 188, 260, 458, 475, 988, 1025
HpyCH4III ACNGT 2 cut(s) 764, 851
HpyCH4IV ACGT 1 cut(s) 592
HpyCH4V TGCA 5 cut(s) 194, 321, 488, 662, 976
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 801
HpyF3I CTNAG 5 cut(s) 234, 473, 667, 1019, 1049
HpySE526I ACGT 1 cut(s) 592
Hsp92II CATG 3 cut(s) 312, 512, 752
Kpn2I TCCGGA 1 cut(s) 395
KpnI GGTACC 1 cut(s) 255
Kzo9I GATC 5 cut(s) 535, 595, 718, 726, 853
LmnI GCTCC 2 cut(s) 656, 843
Lsp1109I GCAGC 2 cut(s) 272, 646
LweI GCATC 5 cut(s) 64, 193, 475, 859, 963
MaeI CTAG 1 cut(s) 132
MaeII ACGT 1 cut(s) 592
MaeIII GTNAC 3 cut(s) 404, 755, 812
MalI GATC 5 cut(s) 537, 597, 720, 728, 855
MbiI CCGCTC 2 cut(s) 154, 838
MboI GATC 5 cut(s) 535, 595, 718, 726, 853
MfeI CAATTG 1 cut(s) 519
MhlI GDGCHC 1 cut(s) 448
MluCI AATT 6 cut(s) 187, 495, 519, 576, 861, 1080
MmeI TCCRAC 3 cut(s) 586, 654, 1069
Mph1103I ATGCAT 1 cut(s) 978
MroI TCCGGA 1 cut(s) 395
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 4 cut(s) 360, 681, 843, 1084
MslI CAYNNNNRTG 2 cut(s) 507, 968
MspA1I CMGCKG 2 cut(s) 17, 285
MspI CCGG 7 cut(s) 85, 255, 396, 654, 821, 886, 966
MspR9I CCNGG 2 cut(s) 339, 654
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 369
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 2 cut(s) 14, 801
NciI CCSGG 1 cut(s) 654
NdeII GATC 5 cut(s) 535, 595, 718, 726, 853
NlaIII CATG 3 cut(s) 312, 512, 752
NlaIV GGNNCC 3 cut(s) 89, 253, 259
NmuCI GTSAC 1 cut(s) 812
NsiI ATGCAT 1 cut(s) 978
NspI RCATGY 1 cut(s) 312
PaeR7I CTCGAG 1 cut(s) 599
PceI AGGCCT 2 cut(s) 880, 1035
PciI ACATGT 1 cut(s) 308
PctI GAATGC 1 cut(s) 369
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 3 cut(s) 77, 163, 271
PflFI GACNNNGTC 1 cut(s) 145
PinAI ACCGGT 1 cut(s) 885
PkrI GCNGC 3 cut(s) 7, 287, 661
Ppu21I YACGTR 1 cut(s) 593
PscI ACATGT 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 3 cut(s) 89, 253, 259
PspPI GGNCC 2 cut(s) 697, 985
PsrI GAACNNNNNNTAC 2 cut(s) 748, 780
PstI CTGCAG 1 cut(s) 664
PsyI GACNNNGTC 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 285
RsaI GTAC 3 cut(s) 253, 383, 1071
RsaNI GTAC 3 cut(s) 252, 382, 1070
RseI CAYNNNNRTG 2 cut(s) 507, 968
SaqAI TTAA 4 cut(s) 360, 681, 843, 1084
SatI GCNGC 3 cut(s) 6, 286, 660
Sau3AI GATC 5 cut(s) 535, 595, 718, 726, 853
Sau96I GGNCC 2 cut(s) 697, 985
ScrFI CCNGG 2 cut(s) 339, 654
SduI GDGCHC 1 cut(s) 448
SfaNI GCATC 5 cut(s) 64, 193, 475, 859, 963
SfcI CTRYAG 1 cut(s) 660
Sfr274I CTCGAG 1 cut(s) 599
SinI GGWCC 2 cut(s) 697, 985
SlaI CTCGAG 1 cut(s) 599
SmiMI CAYNNNNRTG 2 cut(s) 507, 968
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 6 cut(s) 187, 495, 519, 576, 861, 1080
SseBI AGGCCT 2 cut(s) 880, 1035
SsiI CCGC 6 cut(s) 5, 17, 46, 152, 778, 836
SspMI CTAG 1 cut(s) 132
StuI AGGCCT 2 cut(s) 880, 1035
StyD4I CCNGG 2 cut(s) 337, 652
StyI CCWWGG 2 cut(s) 769, 914
TaaI ACNGT 2 cut(s) 764, 851
TaiI ACGT 1 cut(s) 595
TaqI TCGA 4 cut(s) 75, 451, 600, 1038
TasI AATT 6 cut(s) 187, 495, 519, 576, 861, 1080
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 77, 163, 271
Tru1I TTAA 4 cut(s) 360, 681, 843, 1084
Tru9I TTAA 4 cut(s) 360, 681, 843, 1084
TscAI CASTG 3 cut(s) 268, 589, 817
TseFI GTSAC 1 cut(s) 812
TseI GCWGC 2 cut(s) 285, 659
Tsp45I GTSAC 1 cut(s) 812
TspDTI ATGAA 2 cut(s) 240, 623
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 3 cut(s) 268, 589, 817
Tth111I GACNNNGTC 1 cut(s) 145
VpaK11BI GGWCC 2 cut(s) 697, 985
XbaI TCTAGA 1 cut(s) 131
XceI RCATGY 1 cut(s) 312
XcmI CCANNNNNNNNNTGG 1 cut(s) 741
XhoI CTCGAG 1 cut(s) 599
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.