Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005743

Physical Location & Seq

Genomic Coordinates Reverse (-)

60390867 .. 60394180

Gene Structure 3314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020039

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGACAGGTTCTGCAGCCACGGATGCTGGTTCGGGGTTACCATCTGAGCAATCAGAAGTCATATTTATAGGTACAGGAACGAGCGAAGGAATTCCACGCGTGAGCTGCCTGACAAATCCTTTGAAGACATGTGAGGTTTGTTTAAAAGCTGTGGAACCGGGTAATAAAAATAGAAGACTCAACACAAGCATTGTTGTACGTCATCCTACATCCTCTGGAAGTTCTAACATTCTTATTGATGCTGGAAAATTTTTCTATCACAGTGCTCTCAGATGGTTTCCTGCTTATGGGATAAGAACACTTGATGCGGTTATTATTACTCATTCTCATGCTGATGCAATTGGAGGTCTGGATGATCTTCGTGATTGGACGAACAATGTTCAATCCAGCATTCCAATATATGTGCCTGAGCGTGATTTTGAGGTGATGAAGAAGACTCATTATTATTTGGTTGACACAAGTGTGGTCCAACCTGGTGCTGCTGTCTCAGAGTTGCAATTTAATATTATACATGAGGATCCATTTTCTGTAAGCGATTTGAAGTTTACCCCTTTACCTGTATGGCATGGTCGTGGTTATCGTTCCTTTGGATATCGTTTTGGTAATGTTTGTTATATCAGTGACGTTAGCGAAATACCTGAAGAAACCTATCCACTTCTGAGAGATTGTGAACTCCTGATTATGGATGCTCTACGGCCAGATCGGAATTCTTCAACACATTTTGCACTCCCAAGGGCTTTGGAGGAAGTACGGAAAATACGACCTAAGAGAACATTGTTTACTGGTATGATGCATTTGATGGATCATGAGAAGGTGAATGATTATCTTATAAAATTGAAGGAGACAGAAGGTCTTGATGCACAGTTGAGCTATGATGGGCTTCGGGTACCTATAGCACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B Lactamase_B_2

Protein Analysis

301

Amino Acids

33.55

Weight (kDa)

5.93

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	62 - 215	3e-09	Metallo-beta-lactamase superfamily
Anti-Pycsar_Apyc1	PF23023	73 - 242	7.7e-08	Anti-Pycsar protein Apyc1
Lactamase_B_2	PF12706	76 - 262	8.3e-26	Beta-lactamase superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13800 AT3G13800 AT3G13800 AT3G13800
fragaria_vesca	FvH4_6g33560 FvH4_6g33560 FvH4_6g33560 FvH4_6g33560 FvH4_6g33560 FvH4_6g33560 FvH4_6g33560 FvH4_6g33560
malus_domestica	MD09G1192200.v1.1 MD17G1186100.v1.1
prunus_persica	Prupe.3G048500_v2.0.a1 Prupe.3G048500_v2.0.a1
pyrus_communis	pycom09g10880
rosa_chinensis	RchiOBHm_Chr2g0143471
rosa_laevigata	RLG00000020039
rosa_multiflora	Rmu_sc0003507.1_g000024
rosa_roxburghii	Rroxscaffold_2G00101810
rosa_rugosa	Rorug02G0381800 Rorug02G0381900
rosa_samantha	Rh2AG434800 Rh2BG442600 Rh2CG420700 Rh2DG452800
rosa_wichuraiana	Rw2G035440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	830
Acc65I	GGTACC	1 cut(s)	886
AccB1I	GGYRCC	1 cut(s)	886
AccII	CGCG	1 cut(s)	99
AciI	CCGC	1 cut(s)	308
AclWI	GGATC	3 cut(s)	512, 525, 810
AcoI	YGGCCR	1 cut(s)	695
AcsI	RAATTY	3 cut(s)	90, 248, 706
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	4 cut(s)	73, 198, 750, 888
AfiI	CCNNNNNNNGG	2 cut(s)	287, 682
AflIII	ACRYGT	2 cut(s)	97, 128
AgsI	TTSAA	5 cut(s)	124, 383, 541, 714, 838
AhdI	GACNNNNNGTC	1 cut(s)	849
AjnI	CCWGG	1 cut(s)	472
AleI	CACNNNNGTG	1 cut(s)	461
AluBI	AGCT	3 cut(s)	105, 149, 870
AluI	AGCT	3 cut(s)	105, 149, 870
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	2 cut(s)	490, 836
AlwI	GGATC	3 cut(s)	512, 525, 810
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	695
ApeKI	GCWGC	3 cut(s)	14, 105, 479
ApoI	RAATTY	3 cut(s)	90, 248, 706
ArsI	GACNNNNNNTTYG	2 cut(s)	103, 135
Asp700I	GAANNNNTTC	1 cut(s)	90
Asp718I	GGTACC	1 cut(s)	886
AspS9I	GGNCC	1 cut(s)	466
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	436, 826
AvaII	GGWCC	1 cut(s)	466
BamHI	GGATCC	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	886
BbsI	GAAGAC	3 cut(s)	131, 181, 440
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	3 cut(s)	26, 92, 466
BccI	CCATC	4 cut(s)	49, 267, 793, 869
BceAI	ACGGC	1 cut(s)	710
BciT130I	CCWGG	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	490, 836
BfmI	CTRYAG	2 cut(s)	12, 891
BisI	GCNGC	3 cut(s)	15, 106, 480
BlsI	GCNGC	3 cut(s)	16, 107, 481
Bme1390I	CCNGG	2 cut(s)	159, 474
Bme18I	GGWCC	1 cut(s)	466
BmeRI	GACNNNNNGTC	1 cut(s)	849
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	3 cut(s)	156, 519, 888
BmrFI	CCNGG	2 cut(s)	159, 474
BmsI	GCATC	7 cut(s)	13, 229, 295, 325, 676, 780, 847
BpiI	GAAGAC	3 cut(s)	131, 181, 440
Bpu10I	CCTNAGC	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	18, 731
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 682
Bse1I	ACTGG	1 cut(s)	787
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	18, 731
BseGI	GGATG	5 cut(s)	28, 202, 209, 358, 691
BseLI	CCNNNNNNNGG	2 cut(s)	287, 682
BseMII	CTCAG	5 cut(s)	36, 283, 399, 501, 650
BseNI	ACTGG	1 cut(s)	787
BseXI	GCAGC	3 cut(s)	26, 92, 466
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	697
BshNI	GGYRCC	1 cut(s)	886
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	2 cut(s)	287, 682
BsmAI	GTCTC	2 cut(s)	490, 836
BsmI	GAATGC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	697
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	4 cut(s)	355, 517, 700, 802
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	1 cut(s)	697
BspCNI	CTCAG	5 cut(s)	37, 282, 400, 500, 651
BspFNI	CGCG	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	3 cut(s)	156, 519, 888
BspMAI	CTGCAG	1 cut(s)	16
BspPI	GGATC	3 cut(s)	512, 525, 810
BspT107I	GGYRCC	1 cut(s)	886
BsrI	ACTGG	1 cut(s)	787
BssECI	CCNNGG	2 cut(s)	18, 731
BssMI	GATC	4 cut(s)	355, 517, 700, 802
BssT1I	CCWWGG	1 cut(s)	731
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	263, 864
BstDEI	CTNAG	6 cut(s)	45, 269, 408, 487, 659, 765
BstDSI	CCRYGG	1 cut(s)	18
BstEII	GGTNACC	1 cut(s)	36
BstF5I	GGATG	5 cut(s)	28, 202, 209, 358, 691
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	4 cut(s)	358, 520, 703, 805
BstMAI	GTCTC	2 cut(s)	490, 836
BstMBI	GATC	4 cut(s)	355, 517, 700, 802
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 105
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	132
BstPI	GGTNACC	1 cut(s)	36
BstSCI	CCNGG	2 cut(s)	157, 472
BstSFI	CTRYAG	2 cut(s)	12, 891
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	3 cut(s)	26, 92, 466
BstV2I	GAAGAC	3 cut(s)	131, 181, 440
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	697
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	5 cut(s)	28, 202, 209, 358, 691
BtsIMutI	CAGTG	2 cut(s)	268, 625
CaiI	CAGNNNCTG	1 cut(s)	11
CciI	TCATGA	1 cut(s)	805
Cfr13I	GGNCC	1 cut(s)	466
CsiI	ACCWGGT	1 cut(s)	472
Csp6I	GTAC	4 cut(s)	72, 197, 749, 887
CviAII	CATG	5 cut(s)	129, 329, 512, 566, 806
CviJI	RGCY	7 cut(s)	17, 105, 149, 697, 737, 870, 880
CviKI_1	RGCY	7 cut(s)	17, 105, 149, 697, 737, 870, 880
CviQI	GTAC	4 cut(s)	72, 197, 749, 887
DdeI	CTNAG	6 cut(s)	45, 269, 408, 487, 659, 765
DpnI	GATC	4 cut(s)	357, 519, 702, 804
DpnII	GATC	4 cut(s)	355, 517, 700, 802
DraI	TTTAAA	1 cut(s)	144
DriI	GACNNNNNGTC	1 cut(s)	849
EaeI	YGGCCR	1 cut(s)	695
Eam1105I	GACNNNNNGTC	1 cut(s)	849
Eco130I	CCWWGG	1 cut(s)	731
Eco32I	GATATC	1 cut(s)	593
Eco47I	GGWCC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	660
Eco91I	GGTNACC	1 cut(s)	36
EcoO65I	GGTNACC	1 cut(s)	36
EcoRI	GAATTC	2 cut(s)	90, 706
EcoRII	CCWGG	1 cut(s)	472
EcoRV	GATATC	1 cut(s)	593
EcoT14I	CCWWGG	1 cut(s)	731
EcoT22I	ATGCAT	1 cut(s)	795
ErhI	CCWWGG	1 cut(s)	731
FaeI	CATG	5 cut(s)	132, 332, 515, 569, 809
FatI	CATG	5 cut(s)	128, 328, 511, 565, 805
Fnu4HI	GCNGC	3 cut(s)	15, 106, 480
FokI	GGATG	5 cut(s)	35, 189, 196, 365, 698
Fsp4HI	GCNGC	3 cut(s)	15, 106, 480
GluI	GCNGC	3 cut(s)	15, 106, 480
HaeIII	GGCC	1 cut(s)	697
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	5 cut(s)	132, 332, 515, 569, 809
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	2 cut(s)	177, 436
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	436, 826
Hpy166II	GTNNAC	4 cut(s)	454, 546, 671, 780
Hpy188I	TCNGA	6 cut(s)	46, 55, 272, 490, 660, 705
Hpy188III	TCNNGA	6 cut(s)	216, 350, 362, 676, 806, 854
Hpy8I	GTNNAC	4 cut(s)	454, 546, 671, 780
HpyAV	CCTTC	4 cut(s)	80, 805, 832, 842
HpyCH4III	ACNGT	2 cut(s)	263, 864
HpyCH4IV	ACGT	2 cut(s)	199, 624
HpyCH4V	TGCA	6 cut(s)	14, 338, 496, 725, 793, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 105
HpyF3I	CTNAG	6 cut(s)	45, 269, 408, 487, 659, 765
HpySE526I	ACGT	2 cut(s)	199, 624
Hsp92II	CATG	5 cut(s)	132, 332, 515, 569, 809
KpnI	GGTACC	1 cut(s)	890
Kzo9I	GATC	4 cut(s)	355, 517, 700, 802
Lsp1109I	GCAGC	3 cut(s)	26, 92, 466
LweI	GCATC	7 cut(s)	13, 229, 295, 325, 676, 780, 847
MabI	ACCWGGT	1 cut(s)	472
MaeII	ACGT	2 cut(s)	199, 624
MaeIII	GTNAC	2 cut(s)	36, 620
MalI	GATC	4 cut(s)	357, 519, 702, 804
MboI	GATC	4 cut(s)	355, 517, 700, 802
MboII	GAAGA	7 cut(s)	136, 186, 350, 442, 445, 653, 702
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	6 cut(s)	90, 248, 339, 497, 706, 833
MluI	ACGCGT	1 cut(s)	97
MlyI	GAGTC	2 cut(s)	171, 430
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	6 cut(s)	127, 223, 338, 415, 508, 736
Mph1103I	ATGCAT	1 cut(s)	795
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	2 cut(s)	143, 501
MslI	CAYNNNNRTG	4 cut(s)	327, 333, 461, 570
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	159, 474
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	23, 105
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	4 cut(s)	355, 517, 700, 802
NlaIII	CATG	5 cut(s)	132, 332, 515, 569, 809
NlaIV	GGNNCC	3 cut(s)	156, 519, 888
NmuCI	GTSAC	1 cut(s)	620
NsiI	ATGCAT	1 cut(s)	795
NspI	RCATGY	1 cut(s)	132
OliI	CACNNNNGTG	1 cut(s)	461
PagI	TCATGA	1 cut(s)	805
PciI	ACATGT	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	2 cut(s)	577, 757
PctI	GAATGC	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	90
PkrI	GCNGC	3 cut(s)	16, 107, 481
PleI	GAGTC	2 cut(s)	171, 430
PpsI	GAGTC	2 cut(s)	171, 430
PscI	ACATGT	1 cut(s)	128
PsiI	TTATAA	1 cut(s)	830
Psp6I	CCWGG	1 cut(s)	472
PspEI	GGTNACC	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	3 cut(s)	156, 519, 888
PspPI	GGNCC	1 cut(s)	466
PsrI	GAACNNNNNNTAC	2 cut(s)	763, 795
PstI	CTGCAG	1 cut(s)	16
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	4 cut(s)	73, 198, 750, 888
RsaNI	GTAC	4 cut(s)	72, 197, 749, 887
RseI	CAYNNNNRTG	4 cut(s)	327, 333, 461, 570
SaqAI	TTAA	2 cut(s)	143, 501
SatI	GCNGC	3 cut(s)	15, 106, 480
Sau3AI	GATC	4 cut(s)	355, 517, 700, 802
Sau96I	GGNCC	1 cut(s)	466
SchI	GAGTC	2 cut(s)	171, 430
ScrFI	CCNGG	2 cut(s)	159, 474
SduI	GDGCHC	1 cut(s)	268
SexAI	ACCWGGT	1 cut(s)	472
SfaNI	GCATC	7 cut(s)	13, 229, 295, 325, 676, 780, 847
SfcI	CTRYAG	2 cut(s)	12, 891
SinI	GGWCC	1 cut(s)	466
SmiMI	CAYNNNNRTG	4 cut(s)	327, 333, 461, 570
Sse9I	AATT	6 cut(s)	90, 248, 339, 497, 706, 833
SsiI	CCGC	1 cut(s)	308
SspI	AATATT	1 cut(s)	505
StyD4I	CCNGG	2 cut(s)	157, 472
StyI	CCWWGG	1 cut(s)	731
TaaI	ACNGT	2 cut(s)	263, 864
TaiI	ACGT	2 cut(s)	202, 627
TasI	AATT	6 cut(s)	90, 248, 339, 497, 706, 833
Tru1I	TTAA	2 cut(s)	143, 501
Tru9I	TTAA	2 cut(s)	143, 501
TscAI	CASTG	2 cut(s)	268, 625
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	3 cut(s)	14, 105, 479
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	2 cut(s)	35, 766
TspRI	CASTG	2 cut(s)	268, 625
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	3 cut(s)	90, 248, 706
XceI	RCATGY	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	90
Zsp2I	ATGCAT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.