Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005743

Physical Location & Seq

Genomic Coordinates Reverse (-)

22142943 .. 22146482

Gene Structure 3540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1186100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGTTCAATTTTTGGGCACTATTCGCCCTTCTTCTCTGAGCTACTTTGCTACGTACAAACGCCAACTCTCACTCCACAGCCCTCCAATCACAGCTCCGGCAAATGGGTTTTCTCCCTTTAGACGAATTTTCAACTCTTACCTCCAATCTTATTCTGCAACTACGGGTGCTGGCTCACCTTGTGAGCAATCAGAAATCATATATATAGGTACTGGTACTAGTGAAGGAATTCCCCGAGTCAGCTGCCTGACAAATCCTTTAAAGACATGTGCGGTTTGCTTGATAGCTGTGGAAGCTGGGAATAGAAATAAGAGGCTCAACACAAGCATCCTTATTCGTTATCCTAGACCCTCTGGAAATTATAACATACTTATAGATGCTGGAAAGTTTTTCTACTACAGTGCTCTCCAATGGTTTACTGCCCACGGGTTAAGAATAATTGATGCGGTTATAATTACTCATTCTCATGCTGATGCTATTGGAGGTCTGGATGATCTTCGTGATTGGACAAACAATGTCCAACCCACCATCCCGATCTATGTTCCCCAGCGTGATTTTGAGGTAATGAAAAAGACTCATTATTATTTGGTGGATACAAGTGTGGTTCTTGCTGGTGCTGCAGTCTCAGAGTTGCAATTTAATATCATACATGAGGATCCATTTGTAGTACAAGATTTGAAGGTCAGAATTTATATCAACTTGGTTTATATCGACTTGAGATATAGTTTTGGTAATGTTTGTTATATTAGTGACGTTAGCGACATACCTGAAGAAACTTATCCACTTCTGAAAGACTGCGAGCTCCTGATTCTGGTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B Lactamase_B_2

Protein Analysis

274

Amino Acids

30.68

Weight (kDa)

6.29

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Anti-Pycsar_Apyc1	PF23023	104 - 166	2.2e-06	Anti-Pycsar protein Apyc1
Lactamase_B	PF00753	107 - 178	9e-08	Metallo-beta-lactamase superfamily
Lactamase_B_2	PF12706	121 - 271	4.8e-11	Beta-lactamase superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13800 AT3G13800 AT3G13800 AT3G13800
fragaria_vesca	FvH4_6g33560 FvH4_6g33560 FvH4_6g33560 FvH4_6g33560 FvH4_6g33560 FvH4_6g33560 FvH4_6g33560 FvH4_6g33560
malus_domestica	MD09G1192200.v1.1 MD17G1186100.v1.1
prunus_persica	Prupe.3G048500_v2.0.a1 Prupe.3G048500_v2.0.a1
pyrus_communis	pycom09g10880
rosa_chinensis	RchiOBHm_Chr2g0143471
rosa_laevigata	RLG00000020039
rosa_multiflora	Rmu_sc0003507.1_g000024
rosa_roxburghii	Rroxscaffold_2G00101810
rosa_rugosa	Rorug02G0381800 Rorug02G0381900
rosa_samantha	Rh2AG434800 Rh2BG442600 Rh2CG420700 Rh2DG452800
rosa_wichuraiana	Rw2G035440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	363, 452
AciI	CCGC	2 cut(s)	272, 446
AclWI	GGATC	2 cut(s)	650, 663
AcsI	RAATTY	3 cut(s)	126, 228, 687
AcuI	CTGAAG	1 cut(s)	789
AdeI	CACNNNGTG	1 cut(s)	182
AfaI	GTAC	5 cut(s)	56, 211, 217, 669, 818
AfiI	CCNNNNNNNGG	2 cut(s)	104, 811
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	3 cut(s)	8, 133, 679
AhlI	ACTAGT	1 cut(s)	218
AluBI	AGCT	6 cut(s)	42, 95, 243, 287, 296, 802
AluI	AGCT	6 cut(s)	42, 95, 243, 287, 296, 802
Alw21I	GWGCWC	2 cut(s)	406, 804
Alw26I	GTCTC	1 cut(s)	628
AlwI	GGATC	2 cut(s)	650, 663
Ama87I	CYCGRG	1 cut(s)	234
ApeKI	GCWGC	2 cut(s)	243, 617
ApoI	RAATTY	3 cut(s)	126, 228, 687
Asp700I	GAANNNNTTC	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	168
AvaI	CYCGRG	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	20
BaeI	ACNNNNGTAYC	2 cut(s)	585, 618
BamHI	GGATCC	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	804
Bbv12I	GWGCWC	2 cut(s)	406, 804
BbvI	GCAGC	2 cut(s)	230, 604
BccI	CCATC	1 cut(s)	536
BcgI	CGANNNNNNTGC	2 cut(s)	225, 259
BciVI	GTATCC	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	628
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	2 cut(s)	219, 345
BfmI	CTRYAG	2 cut(s)	397, 618
BfuI	GTATCC	1 cut(s)	586
BisI	GCNGC	2 cut(s)	244, 618
BlsI	GCNGC	2 cut(s)	245, 619
BmeT110I	CYCGRG	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	657
BmsI	GCATC	4 cut(s)	336, 367, 433, 463
BpuEI	CTTGAG	1 cut(s)	736
BsaAI	YACGTR	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	424
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 811
Bse1I	ACTGG	1 cut(s)	217
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	3 cut(s)	327, 496, 528
BseLI	CCNNNNNNNGG	2 cut(s)	104, 811
BseMII	CTCAG	2 cut(s)	29, 639
BseNI	ACTGG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	230, 604
BseYI	CCCAGC	2 cut(s)	296, 546
BsiHKAI	GWGCWC	2 cut(s)	406, 804
BsiHKCI	CYCGRG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	104, 811
BsmAI	GTCTC	1 cut(s)	628
BsoBI	CYCGRG	1 cut(s)	234
Bsp1286I	GDGCHC	3 cut(s)	20, 406, 804
Bsp143I	GATC	3 cut(s)	493, 534, 655
BspACI	CCGC	2 cut(s)	272, 446
BspCNI	CTCAG	2 cut(s)	30, 638
BspLI	GGNNCC	1 cut(s)	657
BspMAI	CTGCAG	1 cut(s)	622
BspPI	GGATC	2 cut(s)	650, 663
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	3 cut(s)	493, 534, 655
Bst4CI	ACNGT	1 cut(s)	401
BstBAI	YACGTR	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	172, 800
BstDEI	CTNAG	2 cut(s)	38, 625
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	3 cut(s)	327, 496, 528
BstKTI	GATC	3 cut(s)	496, 537, 658
BstMAI	GTCTC	1 cut(s)	628
BstMBI	GATC	3 cut(s)	493, 534, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 293, 617
BstNSI	RCATGY	1 cut(s)	270
BstSFI	CTRYAG	2 cut(s)	397, 618
BstSLI	GKGCMC	1 cut(s)	20
BstSNI	TACGTA	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	230, 604
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BsuI	GTATCC	1 cut(s)	586
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	3 cut(s)	327, 496, 528
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	2 cut(s)	172, 800
Csp6I	GTAC	5 cut(s)	55, 210, 216, 668, 817
CviAII	CATG	3 cut(s)	267, 467, 650
CviJI	RGCY	9 cut(s)	42, 81, 95, 174, 243, 287, 296, 316, 802
CviKI_1	RGCY	9 cut(s)	42, 81, 95, 174, 243, 287, 296, 316, 802
CviQI	GTAC	5 cut(s)	55, 210, 216, 668, 817
DdeI	CTNAG	2 cut(s)	38, 625
DpnI	GATC	3 cut(s)	495, 536, 657
DpnII	GATC	3 cut(s)	493, 534, 655
DraI	TTTAAA	1 cut(s)	261
DraIII	CACNNNGTG	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	802
Eco105I	TACGTA	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	804
Eco53kI	GAGCTC	1 cut(s)	802
Eco57I	CTGAAG	1 cut(s)	789
Eco88I	CYCGRG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	802
EcoRI	GAATTC	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	804
FaeI	CATG	3 cut(s)	270, 470, 653
FatI	CATG	3 cut(s)	266, 466, 649
Fnu4HI	GCNGC	2 cut(s)	244, 618
FokI	GGATG	3 cut(s)	314, 503, 515
FriOI	GRGCYC	1 cut(s)	804
Fsp4HI	GCNGC	2 cut(s)	244, 618
FspBI	CTAG	2 cut(s)	219, 345
GluI	GCNGC	2 cut(s)	244, 618
GsaI	CCCAGC	2 cut(s)	300, 550
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	3 cut(s)	270, 470, 653
HinfI	GANTC	3 cut(s)	237, 574, 808
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	168
Hpy166II	GTNNAC	2 cut(s)	417, 817
Hpy188I	TCNGA	5 cut(s)	39, 193, 628, 686, 789
Hpy188III	TCNNGA	5 cut(s)	354, 488, 500, 532, 805
Hpy8I	GTNNAC	2 cut(s)	417, 817
HpyAV	CCTTC	3 cut(s)	39, 218, 673
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	2 cut(s)	53, 753
HpyCH4V	TGCA	3 cut(s)	158, 620, 634
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 293, 617
HpyF3I	CTNAG	2 cut(s)	38, 625
HpySE526I	ACGT	2 cut(s)	53, 753
Hsp92II	CATG	3 cut(s)	270, 470, 653
Kzo9I	GATC	3 cut(s)	493, 534, 655
LmnI	GCTCC	2 cut(s)	100, 807
Lsp1109I	GCAGC	2 cut(s)	230, 604
LweI	GCATC	4 cut(s)	336, 367, 433, 463
MaeI	CTAG	2 cut(s)	219, 345
MaeII	ACGT	2 cut(s)	53, 753
MaeIII	GTNAC	1 cut(s)	749
MalI	GATC	3 cut(s)	495, 536, 657
MboI	GATC	3 cut(s)	493, 534, 655
MboII	GAAGA	3 cut(s)	24, 488, 782
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	3 cut(s)	20, 406, 804
MluCI	AATT	8 cut(s)	8, 126, 228, 358, 438, 453, 635, 687
MlyI	GAGTC	2 cut(s)	246, 568
MmeI	TCCRAC	1 cut(s)	544
MnlI	CCTC	7 cut(s)	93, 152, 306, 361, 476, 553, 646
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	3 cut(s)	260, 431, 639
MslI	CAYNNNNRTG	2 cut(s)	465, 471
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	24, 293, 617
NdeII	GATC	3 cut(s)	493, 534, 655
NlaIII	CATG	3 cut(s)	270, 470, 653
NlaIV	GGNNCC	1 cut(s)	657
NmuCI	GTSAC	1 cut(s)	749
NspI	RCATGY	1 cut(s)	270
PciI	ACATGT	1 cut(s)	266
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	808
PkrI	GCNGC	2 cut(s)	245, 619
PleI	GAGTC	2 cut(s)	245, 568
PpsI	GAGTC	2 cut(s)	245, 568
Ppu21I	YACGTR	1 cut(s)	54
PscI	ACATGT	1 cut(s)	266
PsiI	TTATAA	2 cut(s)	363, 452
Psp124BI	GAGCTC	1 cut(s)	804
PspFI	CCCAGC	2 cut(s)	296, 546
PspN4I	GGNNCC	1 cut(s)	657
PstI	CTGCAG	1 cut(s)	622
PsuI	RGATCY	1 cut(s)	655
PvuII	CAGCTG	1 cut(s)	243
RsaI	GTAC	5 cut(s)	56, 211, 217, 669, 818
RsaNI	GTAC	5 cut(s)	55, 210, 216, 668, 817
RseI	CAYNNNNRTG	2 cut(s)	465, 471
SacI	GAGCTC	1 cut(s)	804
SaqAI	TTAA	3 cut(s)	260, 431, 639
SatI	GCNGC	2 cut(s)	244, 618
Sau3AI	GATC	3 cut(s)	493, 534, 655
SchI	GAGTC	2 cut(s)	246, 568
SduI	GDGCHC	3 cut(s)	20, 406, 804
SfaNI	GCATC	4 cut(s)	336, 367, 433, 463
SfcI	CTRYAG	2 cut(s)	397, 618
SmiMI	CAYNNNNRTG	2 cut(s)	465, 471
SmlI	CTYRAG	1 cut(s)	715
SmoI	CTYRAG	1 cut(s)	715
SnaBI	TACGTA	1 cut(s)	54
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	8 cut(s)	8, 126, 228, 358, 438, 453, 635, 687
SsiI	CCGC	2 cut(s)	272, 446
SspMI	CTAG	2 cut(s)	219, 345
SstI	GAGCTC	1 cut(s)	804
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	2 cut(s)	56, 756
TaqI	TCGA	1 cut(s)	711
TasI	AATT	8 cut(s)	8, 126, 228, 358, 438, 453, 635, 687
TatI	WGTACW	2 cut(s)	667, 816
TfiI	GAWTC	1 cut(s)	808
Tru1I	TTAA	3 cut(s)	260, 431, 639
Tru9I	TTAA	3 cut(s)	260, 431, 639
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	749
TseI	GCWGC	2 cut(s)	243, 617
Tsp45I	GTSAC	1 cut(s)	749
TspDTI	ATGAA	1 cut(s)	581
TspRI	CASTG	1 cut(s)	406
XapI	RAATTY	3 cut(s)	126, 228, 687
XceI	RCATGY	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	2 cut(s)	219, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.