Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005743

Physical Location & Seq

Genomic Coordinates Reverse (-)

57414986 .. 57419730

Gene Structure 4745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG420700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGTTCAATTTCTGGGCACCCTTCGCCCTTCTCCTTCTTTAAGCTCTTTCGCTACTTACAAACGCCAAGTCTACTCGCCAATCACAGCTCCCAGAAATGGGTTCTTGTCCTTCAGACGAATGTTCAAGGCTTACATTCAATCCAGTTCAGCAGCGACGGATGCTGGTTTGGGGTTACCATCTGAGCAATCAGAAGTCATATTTATAGGTACAGGAACGAGCGAAGGAATTCCACGTGTGAGCTGCCTGACAAATCCTTTGAAGACATGTGAGGTTTGTTTAAAAGCTGTGGAACCAGGTAATAAAAATAGGAGACTCAACACAAGCATTGTTGTACGTCATCCTACATCCTCTGGAAGTTCCAACATTCTTATTGATGCTGGAAAATTTTTCTATCACAGTGCTCTCAGATGGTTTCCTGCTTATGGGATAAGAACACTTGATGCGGTTATTATTACTCATTCTCATGCTGATGCAATTGGAGGTCTGGATGATCTTCGTGATTGGACGAACAATGTTCAATCCAGCATTCCAATATATGTGCCTGAGCGTGATTTTGAGGTGATGAAGAAGACTCATTATTATTTGGTTGACACAAGTGTGGTCCAACCTGGTGCTGCTGTCTCAGAGTTGCAATTTAATATTATACATGAGGATTCATTTTCCGTGAGCGATTTGAAGTTTACCCCTTTACCTGTATGGCATGGTCGTGGTTATCGTTCCTTTGGATATCGTTTTGGTAATGTTTGTTATATCAGTGACGTTAGCGAAATACCTGAAGAAACCTATCCACTTCTGAGAGATTGTGAACTCCTGATTATGGTGCCTCCCCCTCACTTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B Lactamase_B_2

Protein Analysis

281

Amino Acids

31.34

Weight (kDa)

7.08

Isoelectric Point (pI)

54.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	108 - 185	3.7e-09	Metallo-beta-lactamase superfamily
Anti-Pycsar_Apyc1	PF23023	119 - 266	3.4e-07	Anti-Pycsar protein Apyc1
Lactamase_B_2	PF12706	122 - 273	6.3e-20	Beta-lactamase superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13800 AT3G13800 AT3G13800 AT3G13800
fragaria_vesca	FvH4_6g33560 FvH4_6g33560 FvH4_6g33560 FvH4_6g33560 FvH4_6g33560 FvH4_6g33560 FvH4_6g33560 FvH4_6g33560
malus_domestica	MD09G1192200.v1.1 MD17G1186100.v1.1
prunus_persica	Prupe.3G048500_v2.0.a1 Prupe.3G048500_v2.0.a1
pyrus_communis	pycom09g10880
rosa_chinensis	RchiOBHm_Chr2g0143471
rosa_laevigata	RLG00000020039
rosa_multiflora	Rmu_sc0003507.1_g000024
rosa_roxburghii	Rroxscaffold_2G00101810
rosa_rugosa	Rorug02G0381800 Rorug02G0381900
rosa_samantha	Rh2AG434800 Rh2BG442600 Rh2CG420700 Rh2DG452800
rosa_wichuraiana	Rw2G035440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	17, 823
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	1 cut(s)	446
AcsI	RAATTY	2 cut(s)	228, 386
AcuI	CTGAAG	2 cut(s)	97, 798
AcvI	CACGTG	1 cut(s)	236
AfaI	GTAC	2 cut(s)	211, 336
AfiI	CCNNNNNNNGG	4 cut(s)	98, 99, 425, 820
AflIII	ACRYGT	2 cut(s)	235, 266
AgsI	TTSAA	6 cut(s)	8, 127, 140, 262, 521, 679
AjnI	CCWGG	2 cut(s)	295, 610
AleI	CACNNNNGTG	1 cut(s)	599
AluBI	AGCT	4 cut(s)	45, 89, 243, 287
AluI	AGCT	4 cut(s)	45, 89, 243, 287
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	2 cut(s)	307, 628
ApeKI	GCWGC	3 cut(s)	152, 243, 617
ApoI	RAATTY	2 cut(s)	228, 386
ArsI	GACNNNNNNTTYG	4 cut(s)	54, 86, 241, 273
Asp700I	GAANNNNTTC	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	604
AsuHPI	GGTGA	1 cut(s)	574
AvaII	GGWCC	1 cut(s)	604
BaeGI	GKGCMC	1 cut(s)	20
BanI	GGYRCC	2 cut(s)	17, 823
BbrPI	CACGTG	1 cut(s)	236
BbsI	GAAGAC	2 cut(s)	269, 578
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	3 cut(s)	164, 230, 604
BccI	CCATC	2 cut(s)	187, 405
BciT130I	CCWGG	2 cut(s)	297, 612
BcoDI	GTCTC	2 cut(s)	307, 628
BisI	GCNGC	3 cut(s)	153, 244, 618
BlsI	GCNGC	3 cut(s)	154, 245, 619
Bme1390I	CCNGG	2 cut(s)	297, 612
Bme18I	GGWCC	1 cut(s)	604
BmgT120I	GGNCC	1 cut(s)	604
BmiI	GGNNCC	3 cut(s)	19, 294, 825
BmrFI	CCNGG	2 cut(s)	297, 612
BmsI	GCATC	4 cut(s)	151, 367, 433, 463
BpiI	GAAGAC	2 cut(s)	269, 578
Bpu10I	CCTNAGC	1 cut(s)	546
BsaAI	YACGTR	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 99, 425, 820
Bse1I	ACTGG	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	297, 612
BseGI	GGATG	4 cut(s)	166, 340, 347, 496
BseLI	CCNNNNNNNGG	4 cut(s)	98, 99, 425, 820
BseMII	CTCAG	5 cut(s)	174, 421, 537, 639, 788
BseNI	ACTGG	1 cut(s)	144
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	164, 230, 604
BshNI	GGYRCC	2 cut(s)	17, 823
BsiHKAI	GWGCWC	1 cut(s)	406
BslI	CCNNNNNNNGG	4 cut(s)	98, 99, 425, 820
BsmAI	GTCTC	2 cut(s)	307, 628
BsmI	GAATGC	1 cut(s)	528
Bsp1286I	GDGCHC	2 cut(s)	20, 406
Bsp143I	GATC	1 cut(s)	493
BspACI	CCGC	1 cut(s)	446
BspCNI	CTCAG	5 cut(s)	175, 420, 538, 638, 789
BspLI	GGNNCC	3 cut(s)	19, 294, 825
BspT107I	GGYRCC	2 cut(s)	17, 823
BsrI	ACTGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	493
Bst2UI	CCWGG	2 cut(s)	297, 612
Bst4CI	ACNGT	1 cut(s)	401
BstBAI	YACGTR	1 cut(s)	236
BstDEI	CTNAG	5 cut(s)	183, 407, 546, 625, 797
BstEII	GGTNACC	1 cut(s)	174
BstF5I	GGATG	4 cut(s)	166, 340, 347, 496
BstKTI	GATC	1 cut(s)	496
BstMAI	GTCTC	2 cut(s)	307, 628
BstMBI	GATC	1 cut(s)	493
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 161
BstNI	CCWGG	2 cut(s)	297, 612
BstNSI	RCATGY	1 cut(s)	270
BstPI	GGTNACC	1 cut(s)	174
BstSCI	CCNGG	2 cut(s)	295, 610
BstSLI	GKGCMC	1 cut(s)	20
BstV1I	GCAGC	3 cut(s)	164, 230, 604
BstV2I	GAAGAC	2 cut(s)	269, 578
BtsCI	GGATG	4 cut(s)	166, 340, 347, 496
BtsIMutI	CAGTG	2 cut(s)	406, 763
Cfr13I	GGNCC	1 cut(s)	604
CsiI	ACCWGGT	2 cut(s)	295, 610
Csp6I	GTAC	2 cut(s)	210, 335
CviAII	CATG	4 cut(s)	267, 467, 650, 704
CviJI	RGCY	5 cut(s)	45, 89, 131, 243, 287
CviKI_1	RGCY	5 cut(s)	45, 89, 131, 243, 287
CviQI	GTAC	2 cut(s)	210, 335
DdeI	CTNAG	5 cut(s)	183, 407, 546, 625, 797
DpnI	GATC	1 cut(s)	495
DpnII	GATC	1 cut(s)	493
DraI	TTTAAA	1 cut(s)	282
Eco32I	GATATC	1 cut(s)	731
Eco47I	GGWCC	1 cut(s)	604
Eco57I	CTGAAG	2 cut(s)	97, 798
Eco72I	CACGTG	1 cut(s)	236
Eco91I	GGTNACC	1 cut(s)	174
EcoO65I	GGTNACC	1 cut(s)	174
EcoRI	GAATTC	1 cut(s)	228
EcoRII	CCWGG	2 cut(s)	295, 610
EcoRV	GATATC	1 cut(s)	731
FaeI	CATG	4 cut(s)	270, 470, 653, 707
FatI	CATG	4 cut(s)	266, 466, 649, 703
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	153, 244, 618
FokI	GGATG	4 cut(s)	173, 327, 334, 503
Fsp4HI	GCNGC	3 cut(s)	153, 244, 618
GluI	GCNGC	3 cut(s)	153, 244, 618
Hin1II	CATG	4 cut(s)	270, 470, 653, 707
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	3 cut(s)	315, 574, 656
HphI	GGTGA	1 cut(s)	574
Hpy166II	GTNNAC	4 cut(s)	73, 592, 684, 809
Hpy188I	TCNGA	6 cut(s)	116, 184, 193, 410, 628, 798
Hpy188III	TCNNGA	4 cut(s)	354, 488, 500, 814
Hpy8I	GTNNAC	4 cut(s)	73, 592, 684, 809
Hpy99I	CGWCG	1 cut(s)	160
HpyAV	CCTTC	5 cut(s)	32, 39, 45, 121, 218
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	3 cut(s)	235, 337, 762
HpyCH4V	TGCA	2 cut(s)	476, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 161
HpyF3I	CTNAG	5 cut(s)	183, 407, 546, 625, 797
HpySE526I	ACGT	3 cut(s)	235, 337, 762
Hsp92II	CATG	4 cut(s)	270, 470, 653, 707
Kzo9I	GATC	1 cut(s)	493
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	3 cut(s)	164, 230, 604
LweI	GCATC	4 cut(s)	151, 367, 433, 463
MabI	ACCWGGT	2 cut(s)	295, 610
MaeII	ACGT	3 cut(s)	235, 337, 762
MaeIII	GTNAC	2 cut(s)	174, 758
MalI	GATC	1 cut(s)	495
MboI	GATC	1 cut(s)	493
MboII	GAAGA	5 cut(s)	274, 488, 580, 583, 791
MfeI	CAATTG	1 cut(s)	477
MhlI	GDGCHC	2 cut(s)	20, 406
MluCI	AATT	5 cut(s)	8, 228, 386, 477, 635
MlyI	GAGTC	2 cut(s)	309, 568
MmeI	TCCRAC	2 cut(s)	387, 631
MnlI	CCTC	7 cut(s)	265, 361, 476, 553, 646, 837, 843
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	3 cut(s)	41, 281, 639
MslI	CAYNNNNRTG	4 cut(s)	465, 471, 599, 708
MspR9I	CCNGG	2 cut(s)	297, 612
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	2 cut(s)	297, 612
MwoI	GCNNNNNNNGC	2 cut(s)	24, 161
NdeII	GATC	1 cut(s)	493
NlaIII	CATG	4 cut(s)	270, 470, 653, 707
NlaIV	GGNNCC	3 cut(s)	19, 294, 825
NmuCI	GTSAC	1 cut(s)	758
NspI	RCATGY	1 cut(s)	270
OliI	CACNNNNGTG	1 cut(s)	599
PciI	ACATGT	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	1 cut(s)	715
PctI	GAATGC	1 cut(s)	528
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	656
PkrI	GCNGC	3 cut(s)	154, 245, 619
PleI	GAGTC	2 cut(s)	309, 568
PmaCI	CACGTG	1 cut(s)	236
PmlI	CACGTG	1 cut(s)	236
PpsI	GAGTC	2 cut(s)	309, 568
Ppu21I	YACGTR	1 cut(s)	236
PscI	ACATGT	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	295, 610
PspCI	CACGTG	1 cut(s)	236
PspEI	GGTNACC	1 cut(s)	174
PspGI	CCWGG	2 cut(s)	295, 610
PspN4I	GGNNCC	3 cut(s)	19, 294, 825
PspPI	GGNCC	1 cut(s)	604
RsaI	GTAC	2 cut(s)	211, 336
RsaNI	GTAC	2 cut(s)	210, 335
RseI	CAYNNNNRTG	4 cut(s)	465, 471, 599, 708
SaqAI	TTAA	3 cut(s)	41, 281, 639
SatI	GCNGC	3 cut(s)	153, 244, 618
Sau3AI	GATC	1 cut(s)	493
Sau96I	GGNCC	1 cut(s)	604
SchI	GAGTC	2 cut(s)	309, 568
ScrFI	CCNGG	2 cut(s)	297, 612
SduI	GDGCHC	2 cut(s)	20, 406
SexAI	ACCWGGT	2 cut(s)	295, 610
SfaNI	GCATC	4 cut(s)	151, 367, 433, 463
SinI	GGWCC	1 cut(s)	604
SmiMI	CAYNNNNRTG	4 cut(s)	465, 471, 599, 708
Sse9I	AATT	5 cut(s)	8, 228, 386, 477, 635
SsiI	CCGC	1 cut(s)	446
SspI	AATATT	1 cut(s)	643
StyD4I	CCNGG	2 cut(s)	295, 610
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	3 cut(s)	238, 340, 765
TasI	AATT	5 cut(s)	8, 228, 386, 477, 635
TfiI	GAWTC	1 cut(s)	656
Tru1I	TTAA	3 cut(s)	41, 281, 639
Tru9I	TTAA	3 cut(s)	41, 281, 639
TscAI	CASTG	2 cut(s)	406, 763
TseFI	GTSAC	1 cut(s)	758
TseI	GCWGC	3 cut(s)	152, 243, 617
Tsp45I	GTSAC	1 cut(s)	758
TspDTI	ATGAA	3 cut(s)	581, 648, 831
TspGWI	ACGGA	2 cut(s)	173, 655
TspRI	CASTG	2 cut(s)	406, 763
VpaK11BI	GGWCC	1 cut(s)	604
XapI	RAATTY	2 cut(s)	228, 386
XceI	RCATGY	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.