AT3G14900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016004
Physical Location & Seq
Reverse (-)
5013291 .. 5015342
2052 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G14900.1

Sequence Viewer

Length: 1836 bp
ATGCTGAGTCAAGATTTATCCTTTTCTAAAACCCTGAACCCTAGCTTTTCCTTCCGTAAATCTCCACTCAATTCCGGGGTACGAAGGATCGTTTCGGTTTTACCGGCAATTACCGAGAGGAATTATGCGTTTAGTGTCAAAAGGTCGGAGCTTTTGCTCAGAGAAGATGGTGGATTCCGGCGAGACGTGCGGGCATTGGCCGGGAGGAGCAAGAAAAAGCTTGGAGGAGGTTCATCTGGTGGAAGGATAGAAGGAGATTCGGATATGAGGAAGCAGGTGAAGAGGAATGCTCGTGAAAAGTCGAAGAAGCTAGCGGAATCTTTGTTTTATAGATTGTATAATAACCCTGACAAGAGTCGGAGTCAGATTCTCAGTAGTCATCCGGATAAGTTTACTGAGGAGGAGCTTGAGATGATTGGGCTTGGTTACGATAGGATGGTTCGGTTTATGGATAAGGATGACCCGAGATTGCGTCATCCTTATGATTGGTTCAAGTATGGAGAGTTTGGACCTTACTCGTGGCGTGGTGTTGTGGTTGGTGATCCGGTTCGTGGTACTATCTCTGATGAGTGTGTTACTATGATTGGTGAAGTGGAGAATCATGAAGAGTTTGAGAAGATTGAGCAGCATGAGATGAATATAGCTTTTCAGAAGAGGGTTAAGGAGTTGGATTCGAATGTTGGTTTGAGGTATTTTTGGGTGTTTGTCAGGCATCCGAAATGGAGACTCAGTGAGTTACCGTGGGAGCAATGGACGTTGGTTAGTGAAGTGGTTGTGGAAGCGGATAAGAAGCAGAGGTTGGATAAGTGGAATTTGATGGGGAGATTAGGGAACAAGTCTCGGTCTTTGATATGTCAATGTGCGGCTTGGTTTAGACCTGATATTGTGTATGTGAAGAAGCCTGTGTTTCAGTGTAGGTTTGAGCCTCAAGAAGATTTCTTTAACTCGCTTATCCCTTATTTAAACCCGGTGACGGAATCTGGATTTGTGTGTGAAGTGGAGGATGATGAAGGTAGAGTGGAGTTGAGTACTTATTACGGAGGATTGTGTAAGATGTTGAAGGTGAGACAGACAGCTTTCGTGGATGATGTGGTGAATGCTTATGAGAAGTTGAGTGATGAAAAGAAGTCCAGAGTGTTGAAGTTCTTGCTTGGAAACCACCCGAACGAGCTGTTGCATCCGTATACAAAAGAATGGAAAGCAAAGTTGGAGGAGATGGAGTTAGGGTGTGATGCTCCAGATGAAGATGAGGATGAGATTAGCATTAGTGGAAGCTCAGAGAAGGCTGAGTTCTCAGAATGGATTGAAGATGAAGCTGACAATGACGATGATGATGATGATGATGATGATGATGATGGTGAGGTGGAAGAAGTAGATGATGATGATAACATGGTTGTCGATGTGGAGGGAAACGTTGAAGAAGACAGTTTGGAAGATGAAATAGAGGAGTCGGATCCGGAAGAGGATGAGAGGTACTGGGAAGAGCAATTCAACAAAGCGACAAACAATGCGGAGCGGATGGAGAAGCTTGCGGAGATGAGTATGGTGGTGTCAGATAAGTTTTATGAGAAGCAGTTAAAGGCATTGGAGGAACGAGAAAAGGGAGAGATTGAAGGAGATGAGTTGGAAATGAGAGGTAAGAAGGCAAAAGTGAAGCCAGAAGAATGGAAGACAGTAGGATATGGAAGGTGGATGAAGAAGATAAAGAAGAGTAGGATTCCACCTGAGCTCTTTCTCCGTGCTGCTGTTAGGCCCTTTGTTTACAGAAACCTTGTCAAAGAGATTGTTCTGACAAGACACGCCATTTTGGAAGGCGAGATTGGTCAGAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

611

Amino Acids

71.22

Weight (kDa)

4.9

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14900
fragaria_vesca FvH4_3g18290
malus_domestica MD03G1243600.v1.1
prunus_persica Prupe.4G164700_v2.0.a1
pyrus_communis pycom03g19030
rosa_chinensis RchiOBHm_Chr5g0030921
rosa_laevigata RLG00000033272
rosa_multiflora Rmu_sc0001974.1_g000013
rosa_roxburghii Rroxscaffold_1G00049340
rosa_rugosa Rorug05G0121500
rosa_samantha Rh5AG214700 Rh5BG213600 Rh5CG237500 Rh5DG218100
rosa_wichuraiana Rw5G019630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 265
Acc36I ACCTGC 1 cut(s) 265
AccBSI CCGCTC 1 cut(s) 1516
AccI GTMKAC 1 cut(s) 1184
AccIII TCCGGA 2 cut(s) 382, 1456
AciI CCGC 7 cut(s) 190, 314, 782, 863, 1511, 1516, 1532
AclI AACGTT 1 cut(s) 1413
AclWI GGATC 4 cut(s) 95, 536, 1448, 1461
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 1 cut(s) 811
AfaI GTAC 4 cut(s) 81, 556, 1030, 1475
AfiI CCNNNNNNNGG 2 cut(s) 551, 973
AgsI TTSAA 7 cut(s) 493, 1060, 1141, 1307, 1418, 1492, 1613
AjiI CACGTC 1 cut(s) 187
AjuI GAANNNNNNNTTGG 6 cut(s) 782, 814, 1190, 1222, 1803, 1835
Alw21I GWGCWC 1 cut(s) 1731
Alw26I GTCTC 4 cut(s) 177, 718, 843, 1060
AlwI GGATC 4 cut(s) 95, 536, 1448, 1461
Ama87I CYCGRG 1 cut(s) 463
Aor13HI TCCGGA 2 cut(s) 382, 1456
AoxI GGCC 2 cut(s) 198, 1751
ApeKI GCWGC 2 cut(s) 625, 1742
ApoI RAATTY 1 cut(s) 811
AspS9I GGNCC 2 cut(s) 509, 1752
AsuC2I CCSGG 3 cut(s) 76, 202, 968
AsuHPI GGTGA 7 cut(s) 289, 551, 599, 982, 1075, 1105, 1370
AsuII TTCGAA 1 cut(s) 674
AsuNHI GCTAGC 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 463
AvaII GGWCC 1 cut(s) 509
BamHI GGATCC 1 cut(s) 1453
BanII GRGCYC 1 cut(s) 1731
BauI CACGAG 2 cut(s) 291, 517
BbsI GAAGAC 2 cut(s) 1428, 1676
Bbv12I GWGCWC 1 cut(s) 1731
BbvI GCAGC 2 cut(s) 637, 1729
BccI CCATC 6 cut(s) 161, 430, 811, 1210, 1349, 1513
BcnI CCSGG 3 cut(s) 76, 202, 968
BcoDI GTCTC 4 cut(s) 177, 718, 843, 1060
BfaI CTAG 2 cut(s) 42, 311
BfuAI ACCTGC 1 cut(s) 265
BisI GCNGC 3 cut(s) 626, 864, 1743
BlsI GCNGC 3 cut(s) 627, 865, 1744
BmcAI AGTACT 1 cut(s) 1030
Bme1390I CCNGG 3 cut(s) 76, 202, 968
Bme18I GGWCC 1 cut(s) 509
BmeT110I CYCGRG 1 cut(s) 463
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 2 cut(s) 509, 1752
BmiI GGNNCC 1 cut(s) 1455
BmrFI CCNGG 3 cut(s) 76, 202, 968
BmrI ACTGGG 1 cut(s) 1486
BmsI GCATC 3 cut(s) 721, 1186, 1222
BmtI GCTAGC 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 1486
BoxI GACNNNNGTC 1 cut(s) 354
BpiI GAAGAC 2 cut(s) 1428, 1676
BplI GAGNNNNNCTC 2 cut(s) 274, 306
BpmI CTGGAG 1 cut(s) 1221
Bpu10I CCTNAGC 1 cut(s) 1725
Bpu14I TTCGAA 1 cut(s) 674
BpuEI CTTGAG 2 cut(s) 428, 912
BpuMI CCSGG 3 cut(s) 76, 202, 968
BsaJI CCNNGG 2 cut(s) 75, 740
BsaWI WCCGGW 3 cut(s) 382, 544, 1456
BsaXI ACNNNNNCTCC 6 cut(s) 715, 745, 1205, 1211, 1235, 1241
Bsc4I CCNNNNNNNGG 2 cut(s) 551, 973
Bse118I RCCGGY 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 1481
Bse3DI GCAATG 1 cut(s) 755
BseAI TCCGGA 2 cut(s) 382, 1456
BseDI CCNNGG 2 cut(s) 75, 740
BseLI CCNNNNNNNGG 2 cut(s) 551, 973
BseMI GCAATG 1 cut(s) 755
BseMII CTCAG 8 cut(s) 172, 385, 387, 742, 1278, 1290, 1308, 1716
BseNI ACTGG 1 cut(s) 1481
BseRI GAGGAG 6 cut(s) 220, 240, 413, 416, 1226, 1460
BseXI GCAGC 2 cut(s) 637, 1729
BshFI GGCC 2 cut(s) 200, 1753
BsiHKAI GWGCWC 1 cut(s) 1731
BsiHKCI CYCGRG 1 cut(s) 463
BsiSI CCGG 8 cut(s) 75, 104, 178, 201, 383, 545, 968, 1457
BslI CCNNNNNNNGG 2 cut(s) 551, 973
BsmAI GTCTC 4 cut(s) 177, 718, 843, 1060
BsmBI CGTCTC 1 cut(s) 177
BsmI GAATGC 2 cut(s) 292, 1102
BsnI GGCC 2 cut(s) 200, 1753
BsoBI CYCGRG 1 cut(s) 463
Bsp119I TTCGAA 1 cut(s) 674
Bsp1286I GDGCHC 1 cut(s) 1731
Bsp13I TCCGGA 2 cut(s) 382, 1456
Bsp143I GATC 3 cut(s) 87, 541, 1453
BspACI CCGC 7 cut(s) 190, 314, 782, 863, 1511, 1516, 1532
BspANI GGCC 2 cut(s) 200, 1753
BspCNI CTCAG 8 cut(s) 171, 384, 388, 741, 1279, 1289, 1307, 1717
BspEI TCCGGA 2 cut(s) 382, 1456
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 1 cut(s) 1455
BspMI ACCTGC 1 cut(s) 265
BspOI GCTAGC 1 cut(s) 314
BspPI GGATC 4 cut(s) 95, 536, 1448, 1461
BspQI GCTCTTC 1 cut(s) 1476
BspT104I TTCGAA 1 cut(s) 674
BsrBI CCGCTC 1 cut(s) 1516
BsrDI GCAATG 1 cut(s) 755
BsrFI RCCGGY 1 cut(s) 103
BsrI ACTGG 1 cut(s) 1481
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 2 cut(s) 75, 740
BssMI GATC 3 cut(s) 87, 541, 1453
BssNAI GTATAC 1 cut(s) 1185
BssSI CACGAG 2 cut(s) 291, 517
Bst1107I GTATAC 1 cut(s) 1185
Bst2BI CACGAG 2 cut(s) 291, 517
Bst4CI ACNGT 3 cut(s) 741, 1427, 1675
Bst6I CTCTTC 6 cut(s) 275, 600, 647, 1455, 1476, 1703
BstBI TTCGAA 1 cut(s) 674
BstC8I GCNNGC 3 cut(s) 192, 312, 1530
BstDEI CTNAG 9 cut(s) 5, 158, 371, 396, 728, 1276, 1287, 1294, 1725
BstDSI CCRYGG 1 cut(s) 740
BstKTI GATC 3 cut(s) 90, 544, 1456
BstMAI GTCTC 4 cut(s) 177, 718, 843, 1060
BstMBI GATC 3 cut(s) 87, 541, 1453
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstPAI GACNNNNGTC 1 cut(s) 354
BstSCI CCNGG 3 cut(s) 74, 200, 966
BstV1I GCAGC 2 cut(s) 637, 1729
BstV2I GAAGAC 2 cut(s) 1428, 1676
BstX2I RGATCY 1 cut(s) 1453
BstXI CCANNNNNNTGG 1 cut(s) 1665
BstYI RGATCY 1 cut(s) 1453
BstZ17I GTATAC 1 cut(s) 1185
BsuRI GGCC 2 cut(s) 200, 1753
BtgI CCRYGG 1 cut(s) 740
BtrI CACGTC 1 cut(s) 187
BtsIMutI CAGTG 2 cut(s) 736, 917
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 3 cut(s) 192, 312, 1530
CciI TCATGA 1 cut(s) 601
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 2 cut(s) 509, 1752
CseI GACGC 1 cut(s) 461
Csp6I GTAC 4 cut(s) 80, 555, 1029, 1474
CviAII CATG 3 cut(s) 602, 629, 1390
CviQI GTAC 4 cut(s) 80, 555, 1029, 1474
DdeI CTNAG 9 cut(s) 5, 158, 371, 396, 728, 1276, 1287, 1294, 1725
DpnI GATC 3 cut(s) 89, 543, 1455
DpnII GATC 3 cut(s) 87, 541, 1453
DraI TTTAAA 1 cut(s) 963
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 6 cut(s) 275, 600, 647, 1455, 1476, 1703
EarI CTCTTC 6 cut(s) 275, 600, 647, 1455, 1476, 1703
Ecl136II GAGCTC 1 cut(s) 1729
Eco24I GRGCYC 1 cut(s) 1731
Eco47I GGWCC 1 cut(s) 509
Eco53kI GAGCTC 1 cut(s) 1729
Eco88I CYCGRG 1 cut(s) 463
EcoICRI GAGCTC 1 cut(s) 1729
EcoO109I RGGNCCY 1 cut(s) 1752
EcoT38I GRGCYC 1 cut(s) 1731
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 3 cut(s) 605, 632, 1393
FatI CATG 3 cut(s) 601, 628, 1389
FauI CCCGC 1 cut(s) 183
FblI GTMKAC 1 cut(s) 1184
Fnu4HI GCNGC 3 cut(s) 626, 864, 1743
FriOI GRGCYC 1 cut(s) 1731
Fsp4HI GCNGC 3 cut(s) 626, 864, 1743
FspBI CTAG 2 cut(s) 42, 311
GluI GCNGC 3 cut(s) 626, 864, 1743
GsuI CTGGAG 1 cut(s) 1221
HaeIII GGCC 2 cut(s) 200, 1753
HapII CCGG 8 cut(s) 75, 104, 178, 201, 383, 545, 968, 1457
HgaI GACGC 1 cut(s) 461
Hin1II CATG 3 cut(s) 605, 632, 1393
HindIII AAGCTT 2 cut(s) 218, 1526
HpaII CCGG 8 cut(s) 75, 104, 178, 201, 383, 545, 968, 1457
HphI GGTGA 7 cut(s) 289, 551, 599, 982, 1075, 1105, 1370
Hpy166II GTNNAC 3 cut(s) 393, 1185, 1762
Hpy188III TCNNGA 9 cut(s) 11, 293, 383, 602, 929, 981, 1131, 1238, 1457
Hpy8I GTNNAC 3 cut(s) 393, 1185, 1762
HpyCH4III ACNGT 3 cut(s) 741, 1427, 1675
HpyCH4IV ACGT 3 cut(s) 186, 755, 1413
HpyCH4V TGCA 1 cut(s) 1177
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpyF3I CTNAG 9 cut(s) 5, 158, 371, 396, 728, 1276, 1287, 1294, 1725
HpySE526I ACGT 3 cut(s) 186, 755, 1413
Hsp92II CATG 3 cut(s) 605, 632, 1393
Kpn2I TCCGGA 2 cut(s) 382, 1456
Kzo9I GATC 3 cut(s) 87, 541, 1453
LguI GCTCTTC 1 cut(s) 1476
LmnI GCTCC 6 cut(s) 148, 207, 403, 745, 1240, 1513
Lsp1109I GCAGC 2 cut(s) 637, 1729
LweI GCATC 3 cut(s) 721, 1186, 1222
MaeI CTAG 2 cut(s) 42, 311
MaeII ACGT 3 cut(s) 186, 755, 1413
MaeIII GTNAC 4 cut(s) 425, 574, 735, 970
MalI GATC 3 cut(s) 89, 543, 1455
MbiI CCGCTC 1 cut(s) 1516
MboI GATC 3 cut(s) 87, 541, 1453
MflI RGATCY 1 cut(s) 1453
MhlI GDGCHC 1 cut(s) 1731
MluCI AATT 5 cut(s) 70, 108, 121, 811, 1487
MlyI GAGTC 5 cut(s) 16, 364, 370, 720, 1457
MmeI TCCRAC 7 cut(s) 126, 338, 648, 780, 1188, 1431, 1605
MroI TCCGGA 2 cut(s) 382, 1456
MseI TTAA 4 cut(s) 660, 942, 962, 1577
MslI CAYNNNNRTG 1 cut(s) 480
MspI CCGG 8 cut(s) 75, 104, 178, 201, 383, 545, 968, 1457
MspR9I CCNGG 3 cut(s) 76, 202, 968
Mva1269I GAATGC 2 cut(s) 292, 1102
MwoI GCNNNNNNNGC 1 cut(s) 187
NciI CCSGG 3 cut(s) 76, 202, 968
NdeII GATC 3 cut(s) 87, 541, 1453
NheI GCTAGC 1 cut(s) 310
NlaIII CATG 3 cut(s) 605, 632, 1393
NlaIV GGNNCC 1 cut(s) 1455
NmuCI GTSAC 1 cut(s) 970
NspV TTCGAA 1 cut(s) 674
PagI TCATGA 1 cut(s) 601
PaqCI CACCTGC 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 1476
PctI GAATGC 2 cut(s) 292, 1102
PfeI GAWTC 8 cut(s) 174, 257, 317, 367, 598, 671, 977, 1717
PkrI GCNGC 3 cut(s) 627, 865, 1744
PleI GAGTC 5 cut(s) 15, 363, 369, 720, 1456
PpsI GAGTC 5 cut(s) 15, 363, 369, 720, 1456
PshAI GACNNNNGTC 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 1731
Psp1406I AACGTT 1 cut(s) 1413
PspN4I GGNNCC 1 cut(s) 1455
PspPI GGNCC 2 cut(s) 509, 1752
PsuI RGATCY 1 cut(s) 1453
RsaI GTAC 4 cut(s) 81, 556, 1030, 1475
RsaNI GTAC 4 cut(s) 80, 555, 1029, 1474
RseI CAYNNNNRTG 1 cut(s) 480
SacI GAGCTC 1 cut(s) 1731
SapI GCTCTTC 1 cut(s) 1476
SaqAI TTAA 4 cut(s) 660, 942, 962, 1577
SatI GCNGC 3 cut(s) 626, 864, 1743
Sau3AI GATC 3 cut(s) 87, 541, 1453
Sau96I GGNCC 2 cut(s) 509, 1752
ScaI AGTACT 1 cut(s) 1030
SchI GAGTC 5 cut(s) 16, 364, 370, 720, 1457
ScrFI CCNGG 3 cut(s) 76, 202, 968
SduI GDGCHC 1 cut(s) 1731
SfaNI GCATC 3 cut(s) 721, 1186, 1222
SfuI TTCGAA 1 cut(s) 674
SinI GGWCC 1 cut(s) 509
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 2 cut(s) 407, 927
SmoI CTYRAG 2 cut(s) 407, 927
Sse9I AATT 5 cut(s) 70, 108, 121, 811, 1487
SsiI CCGC 7 cut(s) 190, 314, 782, 863, 1511, 1516, 1532
SspMI CTAG 2 cut(s) 42, 311
SstI GAGCTC 1 cut(s) 1731
StyD4I CCNGG 3 cut(s) 74, 200, 966
TaaI ACNGT 3 cut(s) 741, 1427, 1675
TaiI ACGT 3 cut(s) 189, 758, 1416
TaqI TCGA 3 cut(s) 302, 674, 1398
TaqII GACCGA 1 cut(s) 831
TasI AATT 5 cut(s) 70, 108, 121, 811, 1487
TatI WGTACW 1 cut(s) 1028
TauI GCSGC 1 cut(s) 866
TfiI GAWTC 8 cut(s) 174, 257, 317, 367, 598, 671, 977, 1717
Tru1I TTAA 4 cut(s) 660, 942, 962, 1577
Tru9I TTAA 4 cut(s) 660, 942, 962, 1577
TscAI CASTG 2 cut(s) 736, 917
TseFI GTSAC 1 cut(s) 970
TseI GCWGC 2 cut(s) 625, 1742
Tsp45I GTSAC 1 cut(s) 970
TspDTI ATGAA 9 cut(s) 222, 618, 650, 1023, 1134, 1257, 1326, 1452, 1709
TspGWI ACGGA 5 cut(s) 44, 989, 1053, 1170, 1727
TspRI CASTG 2 cut(s) 736, 917
VpaK11BI GGWCC 1 cut(s) 509
XapI RAATTY 1 cut(s) 811
XmiI GTMKAC 1 cut(s) 1184
XspI CTAG 2 cut(s) 42, 311
ZrmI AGTACT 1 cut(s) 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.