Rorug05G0121500

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000039
Physical Location & Seq
Reverse (-)
10741545 .. 10745747
4203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0121500.1

Sequence Viewer

Length: 3378 bp
ATGGAGAAAAGGCAGATTCTGTGGGGGATAGTCTTGCTGGTGGTTTACTATTGTTGCACCATGGCTGCAGCGCAAACCAACTTCAGCACCGACCAGTCTGCTCTTCTTGCTCTCAAAGCACGTATTACCGGTGACCCTCAGAACAAGATCTTGACCAACTGGTCATCCAACTCCGACGTTTGCAACTGGGTCGGGGTCACTTGCGGTGAACGCCACCTTAGGGTCGTATTTTTGAACCTCTCTGAGTTTCATCTCACTGGCACCATTCCTCCGGAGCTAGGAAACCTATCATTTCTTGCTGGGATGCGCCTAGAAAATAACAGCTTCCATGGAACTATCCCAGGGGAATTGGCTGGTTTGCGGCGACTCACGTTGTTTAGCTTCGGATTCAATAATTTTGTGGGAGATATTCCGTCATGGTTGGGGTCCTTGTCCAAACTACAAATCCTCAATTTGTATGGCAATGGGTTTTCAGGTTCAATACCCACGGTTATCTTCAACTTGTCTGCACTACAAGTACTTGATCTCAGATATAATCAACTATCGGGTACCATACCGAAAGAAATCGGGAACTTAACCATGCTGAAGATACTGAACCTAGACTCGAACAATTTCAAAGAACTTCCAAAGGAGATTGGTGCTTTAGATTTGGAGGAATTGTTTATGCAAGACAACGGCCTAGAAGGTCTTGTTCCTGCGGGTGTCTTCAACATGTCTTCTTTGACTACTCTGAATCTATATGGAAACCGTTTGAACGGCAAGATTCCAGACAATTTGTGTGGGAATCTCCCTAATCTTCAAGGATTGAATTTGGCTTACAACCAATTTGAGGGTCCACTTCCATCAAGCTTAGAGCAGTGCAAACAACTTCTGGTATTAACATTGGGAGATAACAATTTCAGTGGGAGTATACCTAGAAATATTGGGAACTTGACGGAGATCAAGTATCTTCATCTTAGTCCAAACAATTTGACAGGGACAATACCACACGAGATTGGTCACCTTGGAAACTTAGAGACTTTAGCACTTGGTGCCAATAATCTCAATGGCCTCATCCCATCAGAAATCTTCAACTTATCCTTGCTAAAAGGAATCGATATTTCTTTGAATCAACTATCAGGCAGTCTCCCTGCAAATATAGGCCTTGCCTTTCCAAACCTACAAGAGATCCATGTAGGAGGAAATAACCTTAGCGGAGAGATCCCAAACTTCATCTCCAATGCTTCTAAGCTCACAAAACTAGACATGGGCCCAAACTTATTTTCTGGGTTTATTCCTGCTACCCTCTGTGCCTTACCAAATCTTCAATGGCTTCTATTATCTTTCAATAACTTGATGATTGATACTTCTACCCCAGAAGCAAACATTTTCTCATGTTTACCTAATCTCAGAAATTTGAGGATGTTAAGCCTAGTAGGAAACCCTTTAAATACCACCCTCCCTATTTCCCTTGGGAATCTCTCTACATCACTACAATATATGGATTTTAGAGGATGCAACTTAAGGGGTAACATTCCCAACGAGATTGGCAACTTCAGCGGCTTAACAACATTGTACCTGGCATTCAATGAACTGAGCGGATCAATTCCAACGACATTGGGAAAACTACGGAATCTCCAAGGTTTGTATTTGACTTTCAACAAATTGCAAGGAAACATACCAGATGAACTTTGTCAGCTAGACAGCCTAGCTGATTTAGAATTGTATAGTAATGAACTCTCTGGTACTATACCTTCCTGCTTAGGTAACCTAGCCAGATCACTAAGAAGGCTAATTTTAAGCTACAATATGCTGACTTCCACAATACCTTCTTCCTTGTGGGAACTTAGATACATCTTGTTGTTACGCCTGTCATCCAATAGTCTAAGTGGACCTCTCTCAGAAGATGTTGGCAATTTGGCAGCTGTGGTAGATATAGATTTATCAAACAACCATTTATCAGGTTCGATGCCAAGCAGCTTTGGGGGTCTTGAAAATCTGGTCTCACTCTCCTTGGCAAATAATAATTTTGAAGGCAACATTCCTAGTTCATTTGGGAACTTCCTAAGCCTAGAACTCCTGGATCTATCCAACAACAGTCTTTCTGGAGTCATTCCGAAGTCTCTAGAAGCACTCTCACGTCTCCAATCTCTGAATCTGTCTTTCAACAAACTACAAGGAGAAATTCCAACTGGTGGACCTTTCAAAAACTTCTCTTCTGCATCTTTTGTCTCAAATGGTGCACTCTGTGGTGCACCCCAATTGCTTGTTCCACCATGCAAGAAGAAAGCAGTTGGCAGTTCTTTCCCAAAATATATTATTATAGGCATCTTGTCAGCAATAGTGCTCATAGTAGGCCTTGCATCGATGATAATGCTATGCAGAAAAAGGAATGTGGAAGCTGCAATGGAGGTTGCCATGTTGCATCAGCCTCTTTGGAGAAATGTTTCACACTTGGAACTTTTAAGGGCAACAAATGGGTTCAATGAAAGCAACTTACTTGGCTCAGGGGGTTTTGGCACAGTATATAAAGGAACGTTGTCAGATGGGATAAATGTTGCGGTAAAGGTTTTCAATTTAGAAGTAGAAGGGGCTTTCAGGAGTTTTCATAATGAATGCGAAATGCTAGGCAATATTCGTCATCGAAATCTTCTCAAAATAATCAGTTGTTGCAGCCAAACAAACTTCAAAGCCGCAGTACTGAACTACATGCCCAATGGAAGTCTTGATAAATGGTTGTATTCCGAAAACCTTTCCTTGAACCTCCTGCAGAGGTTGAATATAGTGATTGATGTTGCATCAGCGTTGGAGTACCTTCATCATGGTTATGAAACACCCATCACCCATTGTGATTTGAAGCCCAGCAACATACTACTAGATGATGATATGGTCGCGCATGTTGCTGATTTTGGCATGGCAAAGCTTTTAGGTGGTGGAGATTCTATGACTCAGACAATGACCCTAGCCACCATTGGTTATATGGCTCCAGAGTATGGAACAGAAGGAATGGTCTCAAGAAGAGGGGATGTGTACAGCTTTGGTATTGTACTGATGGAAACATTCACAAAGAGGAAGCCAACAGATGAGATGTTTGGTGGGGATATGAGTATGAAGCAATGGGTTGCAAATTCACTATTTCTACATGGAATAGTTGAAGTTGCAGATGCCAATTTATTTGGGACTCAAGAAGGCAATGATGTTGTGAACACGACAGAGTGTTTATCATCCATTCTGGGATTAGCTCTAGCTTGTTGTGCAGAATCACCGGAAGAGAGAACAAATATGCAAGATGCTCTAGCCACGCTCAACAAAATTAAGACCAAGTTTTTGAAGGCCACTGCAGGAGGTGTGGTGTTAAAGTTAAACAGTTCTCTTATAAGCAGTTCTAAATTAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

1125

Amino Acids

122.01

Weight (kDa)

5.57

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 30 - 68 5.6e-11 Leucine rich repeat N-terminal domain
LRR_8 PF13855 146 - 205 1.6e-07 Leucine rich repeat
LRR_14 PF23598 167 - 271 2.8e-11 Leucine-rich repeat region
LRR_8 PF13855 217 - 276 4.7e-06 Leucine rich repeat
LRR_14 PF23598 282 - 351 4.7e-07 Leucine-rich repeat region
LRR_8 PF13855 385 - 445 1.7e-07 Leucine rich repeat
LRR_14 PF23598 485 - 594 4.5e-08 Leucine-rich repeat region
LRR_8 PF13855 514 - 573 1.3e-06 Leucine rich repeat
LRR_14 PF23598 605 - 718 7.5e-09 Leucine-rich repeat region
LRR_8 PF13855 662 - 718 3.7e-08 Leucine rich repeat
Pkinase PF00069 822 - 1093 1.7e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 825 - 1092 2e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3356
AasI GACNNNNNNGTC 1 cut(s) 160
Acc65I GGTACC 1 cut(s) 548
AccB1I GGYRCC 3 cut(s) 260, 548, 1031
AccB7I CCANNNNNTGG 2 cut(s) 2174, 2972
AccBSI CCGCTC 1 cut(s) 1578
AccI GTMKAC 1 cut(s) 910
AccII CGCG 1 cut(s) 2873
AccIII TCCGGA 1 cut(s) 271
AciI CCGC 8 cut(s) 204, 361, 698, 1194, 1539, 1578, 2540, 2673
AclI AACGTT 1 cut(s) 2516
AclWI GGATC 4 cut(s) 1162, 1195, 1588, 2070
AcsI RAATTY 4 cut(s) 808, 1393, 2163, 3106
AcuI CTGAAG 3 cut(s) 67, 605, 1519
AdeI CACNNNGTG 2 cut(s) 1031, 2228
AfaI GTAC 8 cut(s) 519, 550, 1556, 1726, 2679, 2792, 3011, 3027
AfiI CCNNNNNNNGG 5 cut(s) 220, 278, 829, 2174, 2972
AflII CTTAAG 1 cut(s) 1501
AflIII ACRYGT 1 cut(s) 711
AgeI ACCGGT 1 cut(s) 128
AjiI CACGTC 1 cut(s) 2120
AjnI CCWGG 3 cut(s) 340, 1557, 2058
AjuI GAANNNNNNNTTGG 4 cut(s) 1246, 1278, 2232, 2264
Alw21I GWGCWC 3 cut(s) 2224, 2236, 2328
Alw26I GTCTC 7 cut(s) 1010, 1130, 1987, 2106, 2126, 2215, 2995
Alw44I GTGCAC 2 cut(s) 2220, 2232
AlwI GGATC 4 cut(s) 1162, 1195, 1588, 2070
AlwNI CAGNNNCTG 1 cut(s) 19
Aor13HI TCCGGA 1 cut(s) 271
AoxI GGCC 6 cut(s) 676, 1048, 1141, 1249, 2335, 3312
ApaI GGGCCC 1 cut(s) 1253
ApaLI GTGCAC 2 cut(s) 2220, 2232
ApeKI GCWGC 6 cut(s) 65, 68, 1901, 1956, 2381, 2652
ApoI RAATTY 4 cut(s) 808, 1393, 2163, 3106
ArsI GACNNNNNNTTYG 2 cut(s) 3289, 3321
AsiGI ACCGGT 1 cut(s) 128
Asp700I GAANNNNTTC 2 cut(s) 611, 2425
Asp718I GGTACC 1 cut(s) 548
AspLEI GCGC 3 cut(s) 73, 309, 2875
AspS9I GGNCC 6 cut(s) 426, 833, 1249, 1250, 1871, 2177
AsuHPI GGTGA 5 cut(s) 143, 218, 992, 2812, 3234
AvaII GGWCC 4 cut(s) 426, 833, 1871, 2177
AxyI CCTNAGG 1 cut(s) 218
BaeGI GKGCMC 3 cut(s) 1253, 2224, 2236
BanI GGYRCC 3 cut(s) 260, 548, 1031
BanII GRGCYC 1 cut(s) 1253
BarI GAAGNNNNNNTAC 2 cut(s) 1717, 1749
BauI CACGAG 1 cut(s) 989
BbsI GAAGAC 2 cut(s) 697, 708
Bbv12I GWGCWC 3 cut(s) 2224, 2236, 2328
BbvI GCAGC 6 cut(s) 52, 80, 1913, 1968, 2368, 2664
BccI CCATC 5 cut(s) 850, 1066, 2519, 2825, 3025
BceAI ACGGC 2 cut(s) 691, 772
BcgI CGANNNNNNTGC 6 cut(s) 80, 114, 172, 206, 2335, 2369
BciT130I CCWGG 3 cut(s) 342, 1559, 2060
BcoDI GTCTC 7 cut(s) 1010, 1130, 1987, 2106, 2126, 2215, 2995
BfmI CTRYAG 3 cut(s) 66, 2747, 3318
BfrI CTTAAG 1 cut(s) 1501
BglII AGATCT 1 cut(s) 147
BisI GCNGC 9 cut(s) 66, 69, 362, 1540, 1902, 1957, 2382, 2653, 2673
BlsI GCNGC 9 cut(s) 67, 70, 363, 1541, 1903, 1958, 2383, 2654, 2674
BmcAI AGTACT 2 cut(s) 519, 2679
Bme1390I CCNGG 3 cut(s) 342, 1559, 2060
Bme18I GGWCC 4 cut(s) 426, 833, 1871, 2177
BmgBI CACGTC 1 cut(s) 2120
BmgT120I GGNCC 6 cut(s) 426, 833, 1249, 1250, 1871, 2177
BmiI GGNNCC 7 cut(s) 262, 427, 550, 834, 1033, 1251, 2964
BmrFI CCNGG 3 cut(s) 342, 1559, 2060
BmrI ACTGGG 1 cut(s) 196
BmuI ACTGGG 1 cut(s) 196
BpiI GAAGAC 2 cut(s) 697, 708
BpmI CTGGAG 2 cut(s) 2106, 2949
Bpu10I CCTNAGC 4 cut(s) 1190, 1741, 2045, 2485
BpuEI CTTGAG 2 cut(s) 2977, 3147
Bsa29I ATCGAT 2 cut(s) 1095, 2345
BsaAI YACGTR 1 cut(s) 122
BsaI GGTCTC 2 cut(s) 1987, 2995
BsaJI CCNNGG 9 cut(s) 60, 328, 340, 341, 486, 1003, 1450, 1618, 1992
BsaWI WCCGGW 3 cut(s) 128, 271, 3244
Bsc4I CCNNNNNNNGG 5 cut(s) 220, 278, 829, 2174, 2972
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 5 cut(s) 94, 164, 191, 262, 2176
Bse21I CCTNAGG 1 cut(s) 218
Bse3DI GCAATG 4 cut(s) 469, 2391, 3101, 3178
BseAI TCCGGA 1 cut(s) 271
BseBI CCWGG 3 cut(s) 342, 1559, 2060
BseCI ATCGAT 2 cut(s) 1095, 2345
BseDI CCNNGG 9 cut(s) 60, 328, 340, 341, 486, 1003, 1450, 1618, 1992
BseGI GGATG 8 cut(s) 164, 309, 1053, 1407, 1499, 1853, 3010, 3203
BseLI CCNNNNNNNGG 5 cut(s) 220, 278, 829, 2174, 2972
BseMI GCAATG 4 cut(s) 469, 2391, 3101, 3178
BseMII CTCAG 8 cut(s) 152, 234, 541, 1402, 1565, 1893, 2499, 2942
BseNI ACTGG 5 cut(s) 94, 164, 191, 262, 2176
BseSI GKGCMC 3 cut(s) 1253, 2224, 2236
BseXI GCAGC 6 cut(s) 52, 80, 1913, 1968, 2368, 2664
BseYI CCCAGC 2 cut(s) 299, 2840
BsgI GTGCAG 2 cut(s) 492, 3255
Bsh1236I CGCG 1 cut(s) 2873
BshFI GGCC 6 cut(s) 678, 1050, 1143, 1251, 2337, 3314
BshNI GGYRCC 3 cut(s) 260, 548, 1031
BshTI ACCGGT 1 cut(s) 128
BshVI ATCGAT 2 cut(s) 1095, 2345
BsiHKAI GWGCWC 3 cut(s) 2224, 2236, 2328
BsiSI CCGG 3 cut(s) 129, 272, 3245
BslFI GGGAC 2 cut(s) 991, 3172
BslI CCNNNNNNNGG 5 cut(s) 220, 278, 829, 2174, 2972
BsmAI GTCTC 7 cut(s) 1010, 1130, 1987, 2106, 2126, 2215, 2995
BsmBI CGTCTC 1 cut(s) 2126
BsmFI GGGAC 2 cut(s) 991, 3172
BsmI GAATGC 2 cut(s) 1562, 2600
BsnI GGCC 6 cut(s) 678, 1050, 1143, 1251, 2337, 3314
Bso31I GGTCTC 2 cut(s) 1987, 2995
Bsp120I GGGCCC 1 cut(s) 1249
Bsp1286I GDGCHC 4 cut(s) 1253, 2224, 2236, 2328
Bsp13I TCCGGA 1 cut(s) 271
Bsp1407I TGTACA 1 cut(s) 3009
Bsp143I GATC 8 cut(s) 147, 523, 939, 1167, 1200, 1580, 1757, 2062
Bsp19I CCATGG 2 cut(s) 60, 328
BspACI CCGC 8 cut(s) 204, 361, 698, 1194, 1539, 1578, 2540, 2673
BspANI GGCC 6 cut(s) 678, 1050, 1143, 1251, 2337, 3314
BspCNI CTCAG 8 cut(s) 151, 235, 540, 1401, 1566, 1892, 2498, 2941
BspDI ATCGAT 2 cut(s) 1095, 2345
BspEI TCCGGA 1 cut(s) 271
BspFNI CGCG 1 cut(s) 2873
BspLI GGNNCC 7 cut(s) 262, 427, 550, 834, 1033, 1251, 2964
BspMAI CTGCAG 3 cut(s) 70, 2751, 3322
BspPI GGATC 4 cut(s) 1162, 1195, 1588, 2070
BspQI GCTCTTC 1 cut(s) 108
BspT107I GGYRCC 3 cut(s) 260, 548, 1031
BspTI CTTAAG 1 cut(s) 1501
BspTNI GGTCTC 2 cut(s) 1987, 2995
BsrBI CCGCTC 1 cut(s) 1578
BsrDI GCAATG 4 cut(s) 469, 2391, 3101, 3178
BsrFI RCCGGY 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 3009
BsrI ACTGG 5 cut(s) 94, 164, 191, 262, 2176
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 9 cut(s) 60, 328, 340, 341, 486, 1003, 1450, 1618, 1992
BssMI GATC 8 cut(s) 147, 523, 939, 1167, 1200, 1580, 1757, 2062
BssNAI GTATAC 1 cut(s) 911
BssSI CACGAG 1 cut(s) 989
BssT1I CCWWGG 6 cut(s) 60, 328, 1003, 1450, 1618, 1992
Bst1107I GTATAC 1 cut(s) 911
Bst2BI CACGAG 1 cut(s) 989
Bst2UI CCWGG 3 cut(s) 342, 1559, 2060
Bst4CI ACNGT 5 cut(s) 490, 749, 2078, 2503, 3347
Bst6I CTCTTC 4 cut(s) 108, 2200, 2992, 3243
BstAFI CTTAAG 1 cut(s) 1501
BstAPI GCANNNNNTGC 1 cut(s) 1031
BstAUI TGTACA 1 cut(s) 3009
BstBAI YACGTR 1 cut(s) 122
BstDSI CCRYGG 3 cut(s) 60, 328, 486
BstEII GGTNACC 3 cut(s) 131, 998, 1745
BstF5I GGATG 8 cut(s) 164, 309, 1053, 1407, 1499, 1853, 3010, 3203
BstFNI CGCG 1 cut(s) 2873
BstHHI GCGC 3 cut(s) 73, 309, 2875
BstKTI GATC 8 cut(s) 150, 526, 942, 1170, 1203, 1583, 1760, 2065
BstMAI GTCTC 7 cut(s) 1010, 1130, 1987, 2106, 2126, 2215, 2995
BstMBI GATC 8 cut(s) 147, 523, 939, 1167, 1200, 1580, 1757, 2062
BstMWI GCNNNNNNNGC 7 cut(s) 107, 116, 210, 1031, 1536, 2879, 3233
BstNI CCWGG 3 cut(s) 342, 1559, 2060
BstNSI RCATGY 3 cut(s) 715, 2692, 2879
BstPI GGTNACC 3 cut(s) 131, 998, 1745
BstSCI CCNGG 3 cut(s) 340, 1557, 2058
BstSFI CTRYAG 3 cut(s) 66, 2747, 3318
BstSLI GKGCMC 3 cut(s) 1253, 2224, 2236
BstUI CGCG 1 cut(s) 2873
BstV1I GCAGC 6 cut(s) 52, 80, 1913, 1968, 2368, 2664
BstV2I GAAGAC 2 cut(s) 697, 708
BstX2I RGATCY 4 cut(s) 147, 1167, 1200, 2062
BstYI RGATCY 4 cut(s) 147, 1167, 1200, 2062
BstZ17I GTATAC 1 cut(s) 911
Bsu15I ATCGAT 2 cut(s) 1095, 2345
Bsu36I CCTNAGG 1 cut(s) 218
BsuRI GGCC 6 cut(s) 678, 1050, 1143, 1251, 2337, 3314
BsuTUI ATCGAT 2 cut(s) 1095, 2345
BtgI CCRYGG 3 cut(s) 60, 328, 486
BtrI CACGTC 1 cut(s) 2120
BtsCI GGATG 8 cut(s) 164, 309, 1053, 1407, 1499, 1853, 3010, 3203
BtsI GCAGTG 2 cut(s) 863, 3315
BtsIMutI CAGTG 4 cut(s) 255, 863, 907, 3315
CaiI CAGNNNCTG 1 cut(s) 19
CfoI GCGC 3 cut(s) 73, 309, 2875
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 6 cut(s) 426, 833, 1249, 1250, 1871, 2177
ClaI ATCGAT 2 cut(s) 1095, 2345
Csp6I GTAC 8 cut(s) 518, 549, 1555, 1725, 2678, 2791, 3010, 3026
CspAI ACCGGT 1 cut(s) 128
CspCI CAANNNNNGTGG 4 cut(s) 760, 795, 883, 918
CviQI GTAC 8 cut(s) 518, 549, 1555, 1725, 2678, 2791, 3010, 3026
DpnI GATC 8 cut(s) 149, 525, 941, 1169, 1202, 1582, 1759, 2064
DpnII GATC 8 cut(s) 147, 523, 939, 1167, 1200, 1580, 1757, 2062
DraI TTTAAA 1 cut(s) 1428
DraIII CACNNNGTG 2 cut(s) 1031, 2228
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
Eam1104I CTCTTC 4 cut(s) 108, 2200, 2992, 3243
EarI CTCTTC 4 cut(s) 108, 2200, 2992, 3243
Eco130I CCWWGG 6 cut(s) 60, 328, 1003, 1450, 1618, 1992
Eco147I AGGCCT 2 cut(s) 1143, 2337
Eco24I GRGCYC 1 cut(s) 1253
Eco31I GGTCTC 2 cut(s) 1987, 2995
Eco47I GGWCC 4 cut(s) 426, 833, 1871, 2177
Eco57I CTGAAG 3 cut(s) 67, 605, 1519
Eco81I CCTNAGG 1 cut(s) 218
Eco91I GGTNACC 3 cut(s) 131, 998, 1745
EcoO109I RGGNCCY 1 cut(s) 426
EcoO65I GGTNACC 3 cut(s) 131, 998, 1745
EcoRII CCWGG 3 cut(s) 340, 1557, 2058
EcoT14I CCWWGG 6 cut(s) 60, 328, 1003, 1450, 1618, 1992
EcoT38I GRGCYC 1 cut(s) 1253
ErhI CCWWGG 6 cut(s) 60, 328, 1003, 1450, 1618, 1992
Esp3I CGTCTC 1 cut(s) 2126
FaqI GGGAC 2 cut(s) 991, 3172
FauI CCCGC 1 cut(s) 691
FblI GTMKAC 1 cut(s) 910
Fnu4HI GCNGC 9 cut(s) 66, 69, 362, 1540, 1902, 1957, 2382, 2653, 2673
FokI GGATG 8 cut(s) 151, 316, 1040, 1414, 1506, 1840, 3017, 3190
FriOI GRGCYC 1 cut(s) 1253
Fsp4HI GCNGC 9 cut(s) 66, 69, 362, 1540, 1902, 1957, 2382, 2653, 2673
GlaI GCGC 3 cut(s) 72, 308, 2874
GluI GCNGC 9 cut(s) 66, 69, 362, 1540, 1902, 1957, 2382, 2653, 2673
GsaI CCCAGC 2 cut(s) 303, 2844
GsuI CTGGAG 2 cut(s) 2106, 2949
HaeIII GGCC 6 cut(s) 678, 1050, 1143, 1251, 2337, 3314
HapII CCGG 3 cut(s) 129, 272, 3245
HhaI GCGC 3 cut(s) 73, 309, 2875
Hin6I GCGC 3 cut(s) 71, 307, 2873
HinP1I GCGC 3 cut(s) 71, 307, 2873
HindIII AAGCTT 2 cut(s) 847, 2900
HpaII CCGG 3 cut(s) 129, 272, 3245
HphI GGTGA 5 cut(s) 143, 218, 992, 2812, 3234
Hpy99I CGWCG 1 cut(s) 179
HpyCH4III ACNGT 5 cut(s) 490, 749, 2078, 2503, 3347
HpyCH4IV ACGT 5 cut(s) 121, 177, 371, 2119, 2516
HpyF10VI GCNNNNNNNGC 7 cut(s) 107, 116, 210, 1031, 1536, 2879, 3233
HpySE526I ACGT 5 cut(s) 121, 177, 371, 2119, 2516
HspAI GCGC 3 cut(s) 71, 307, 2873
Kpn2I TCCGGA 1 cut(s) 271
KpnI GGTACC 1 cut(s) 552
Kzo9I GATC 8 cut(s) 147, 523, 939, 1167, 1200, 1580, 1757, 2062
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 2 cut(s) 274, 2968
Lsp1109I GCAGC 6 cut(s) 52, 80, 1913, 1968, 2368, 2664
MaeII ACGT 5 cut(s) 121, 177, 371, 2119, 2516
MaeIII GTNAC 6 cut(s) 131, 196, 998, 1508, 1745, 1842
MalI GATC 8 cut(s) 149, 525, 941, 1169, 1202, 1582, 1759, 2064
MbiI CCGCTC 1 cut(s) 1578
MboI GATC 8 cut(s) 147, 523, 939, 1167, 1200, 1580, 1757, 2062
MfeI CAATTG 1 cut(s) 2240
MflI RGATCY 4 cut(s) 147, 1167, 1200, 2062
MhlI GDGCHC 4 cut(s) 1253, 2224, 2236, 2328
MlyI GAGTC 5 cut(s) 360, 596, 2097, 2920, 3154
MmeI TCCRAC 6 cut(s) 192, 198, 1613, 2094, 2192, 2766
MroI TCCGGA 1 cut(s) 271
MroXI GAANNNNTTC 2 cut(s) 611, 2425
MslI CAYNNNNRTG 1 cut(s) 2805
MspA1I CMGCKG 2 cut(s) 1539, 1904
MspCI CTTAAG 1 cut(s) 1501
MspI CCGG 3 cut(s) 129, 272, 3245
MspR9I CCNGG 3 cut(s) 342, 1559, 2060
MunI CAATTG 1 cut(s) 2240
Mva1269I GAATGC 2 cut(s) 1562, 2600
MvaI CCWGG 3 cut(s) 342, 1559, 2060
MvnI CGCG 1 cut(s) 2873
MwoI GCNNNNNNNGC 7 cut(s) 107, 116, 210, 1031, 1536, 2879, 3233
NcoI CCATGG 2 cut(s) 60, 328
NdeII GATC 8 cut(s) 147, 523, 939, 1167, 1200, 1580, 1757, 2062
NlaIV GGNNCC 7 cut(s) 262, 427, 550, 834, 1033, 1251, 2964
NmuCI GTSAC 3 cut(s) 131, 196, 998
NspI RCATGY 3 cut(s) 715, 2692, 2879
PasI CCCWGGG 1 cut(s) 341
PceI AGGCCT 2 cut(s) 1143, 2337
PciI ACATGT 1 cut(s) 711
PciSI GCTCTTC 1 cut(s) 108
PctI GAATGC 2 cut(s) 1562, 2600
PdmI GAANNNNTTC 2 cut(s) 611, 2425
PflMI CCANNNNNTGG 2 cut(s) 2174, 2972
PfoI TCCNGGA 1 cut(s) 2058
PinAI ACCGGT 1 cut(s) 128
PkrI GCNGC 9 cut(s) 67, 70, 363, 1541, 1903, 1958, 2383, 2654, 2674
PleI GAGTC 5 cut(s) 360, 596, 2096, 2920, 3154
PpsI GAGTC 5 cut(s) 360, 596, 2096, 2920, 3154
Ppu21I YACGTR 1 cut(s) 122
PpuMI RGGWCCY 1 cut(s) 426
PscI ACATGT 1 cut(s) 711
PsiI TTATAA 1 cut(s) 3356
Psp1406I AACGTT 1 cut(s) 2516
Psp5II RGGWCCY 1 cut(s) 426
Psp6I CCWGG 3 cut(s) 340, 1557, 2058
PspEI GGTNACC 3 cut(s) 131, 998, 1745
PspFI CCCAGC 2 cut(s) 299, 2840
PspGI CCWGG 3 cut(s) 340, 1557, 2058
PspN4I GGNNCC 7 cut(s) 262, 427, 550, 834, 1033, 1251, 2964
PspOMI GGGCCC 1 cut(s) 1249
PspPI GGNCC 6 cut(s) 426, 833, 1249, 1250, 1871, 2177
PspPPI RGGWCCY 1 cut(s) 426
PstI CTGCAG 3 cut(s) 70, 2751, 3322
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 4 cut(s) 147, 1167, 1200, 2062
PvuII CAGCTG 1 cut(s) 1904
RsaI GTAC 8 cut(s) 519, 550, 1556, 1726, 2679, 2792, 3011, 3027
RsaNI GTAC 8 cut(s) 518, 549, 1555, 1725, 2678, 2791, 3010, 3026
RseI CAYNNNNRTG 1 cut(s) 2805
SapI GCTCTTC 1 cut(s) 108
SatI GCNGC 9 cut(s) 66, 69, 362, 1540, 1902, 1957, 2382, 2653, 2673
Sau3AI GATC 8 cut(s) 147, 523, 939, 1167, 1200, 1580, 1757, 2062
Sau96I GGNCC 6 cut(s) 426, 833, 1249, 1250, 1871, 2177
ScaI AGTACT 2 cut(s) 519, 2679
SchI GAGTC 5 cut(s) 360, 596, 2097, 2920, 3154
ScrFI CCNGG 3 cut(s) 342, 1559, 2060
SduI GDGCHC 4 cut(s) 1253, 2224, 2236, 2328
SfcI CTRYAG 3 cut(s) 66, 2747, 3318
SinI GGWCC 4 cut(s) 426, 833, 1871, 2177
SmiMI CAYNNNNRTG 1 cut(s) 2805
SmlI CTYRAG 3 cut(s) 1501, 2992, 3162
SmoI CTYRAG 3 cut(s) 1501, 2992, 3162
SseBI AGGCCT 2 cut(s) 1143, 2337
SsiI CCGC 8 cut(s) 204, 361, 698, 1194, 1539, 1578, 2540, 2673
SspI AATATT 2 cut(s) 922, 2614
StuI AGGCCT 2 cut(s) 1143, 2337
StyD4I CCNGG 3 cut(s) 340, 1557, 2058
StyI CCWWGG 6 cut(s) 60, 328, 1003, 1450, 1618, 1992
TaaI ACNGT 5 cut(s) 490, 749, 2078, 2503, 3347
TaiI ACGT 5 cut(s) 124, 180, 374, 2122, 2519
TaqI TCGA 5 cut(s) 605, 1095, 1946, 2345, 2623
TatI WGTACW 4 cut(s) 517, 2677, 3009, 3025
TauI GCSGC 3 cut(s) 364, 1542, 2675
TscAI CASTG 4 cut(s) 262, 863, 907, 3322
TseFI GTSAC 3 cut(s) 131, 196, 998
TseI GCWGC 6 cut(s) 65, 68, 1901, 1956, 2381, 2652
Tsp45I GTSAC 3 cut(s) 131, 196, 998
TspGWI ACGGA 3 cut(s) 402, 950, 1624
TspRI CASTG 4 cut(s) 262, 863, 907, 3322
Van91I CCANNNNNTGG 2 cut(s) 2174, 2972
Vha464I CTTAAG 1 cut(s) 1501
VneI GTGCAC 2 cut(s) 2220, 2232
VpaK11BI GGWCC 4 cut(s) 426, 833, 1871, 2177
XapI RAATTY 4 cut(s) 808, 1393, 2163, 3106
XbaI TCTAGA 1 cut(s) 2104
XceI RCATGY 3 cut(s) 715, 2692, 2879
XcmI CCANNNNNNNNNTGG 2 cut(s) 1305, 2956
XmiI GTMKAC 1 cut(s) 910
XmnI GAANNNNTTC 2 cut(s) 611, 2425
ZrmI AGTACT 2 cut(s) 519, 2679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.