Rmu_sc0010307.1_g000001

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010307.1
OG0000039
Physical Location & Seq
Reverse (-)
911 .. 5318
4408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010307.1_g000001.1.cds

Sequence Viewer

Length: 2349 bp
atggccgtggtgtcggactttgttctagagaaagcattcgaagcagtgtatgttggcgttgaagacctgatcgtcaagaatttcatttttaagtctctcttcaacgacgccaaatccaggctcgatgatttggcaccactgatcaaggagatggcgcaatacaaccagaaaatgggtcgcccagagaaggaactggaagctttaaagggagtcatggagaaaggccaagagctcgtcaacaagtgctcaacgattacgcgatggagccccttcaaaaagtacaagtacgccaggaaacttctccaatggcaggaatctctcaaaagcccgttggagacgctgaaagtgcaagaatcaatgcaggtaatgaagatcgatgtcgcagttgatgatattcatcgaatgatgctgaaacaacaacccgcagaaagttcaagtagtacacgactcgaacttccaccacttccacggcttatagttggactggacggtcctttgaatgatttgaagaaaaagcttcttgcggatgattgggtgtcgaggcttgtgctcactgctcctggaggctgtgggaaaaccactctcgccacaatgttttgtcaagatgaagaggtcaaaggtaaattcaaggacaatattttcttcattactgtttcacaaaaaggcaatttggaacttgttgtgaaacgactttgtgaatccgtgagttctccggttcctactttccaaaacgaagtacatatgcttcaatggatgcgaacatttttcaagggaagaccaaatcctttgctgttggtcctcgatgatatttggtctggatcatcagaatccattcttcatagctttcaatttgaattatccaattacaagattttagtaacctcaagatctgaatttccaaattttggttcatcatatcatttaaaattattggatgatgacaaagctatggaacttttttatcactcaacatcattgggggatgagcgctctcctgaacgagaagaactctcaagaaagatagtaaagcgttgcaacggatttccacttgctattacagtggttggaagttcactttcttggcaacctatagaggtctggagaaaaagagtttctgaatggtctaaagattcttctattctagatgttgagacggaattatttctttgtctccaaagcagcttagatgctttggataaaagacttgcaattgtcaaagattgttacttggacctgggatcttttcctgaagacaaagaaatccgagttcatgacctcattgatatgtgggcagagaatctggctaatctggttgacagaaggaacagtcgtgtgaagatggagggggacgattactacggtctacggtatgttacccaacatgatttgcttcgagagctagctatttacaacgctaagctagacccggtagagcaaagacaaagaatgaacatagaaataaggggaaacaaaatccccaagtggtggagggaacaaaaaagtcaccctatcaaggctcgcttgttatctattattacaactactgacttcgatatggaatggcccaacttgcaactaccagaagcagaagtttttgtcttgcattttcggagcccaagtagttacaggttgcccgcgtttgtacagaaaatggataaattgaaggtactggtaatagacggcgataggcaattaacaaattttgaactactcggtttgttaccaaatctaaagagaatcagtttcattggtctccgaattggtttcttgacccacaagcccatacaactgaaaagtctaaagaagatatctttcaactcatgtgacacgaggggtatcggcgaaggtgttttcagaatgtcggatgcatttccgaatttggaggaattaaacattcagttctgttttaaggttaaagctaaagaatttcttgcggagtgctgcaatctgattcatttaaagaagattagtatcgtcagccgttttgggttacgtcacttgcccgaagaaatcggaaatttggtcaacttagaagtactgaggctgtcttgtaaatatctttcaaagcttcccagttccatcagcaacctcaaaaagttaaacttccttgacatatgtggatgcgcccgcattgcgttgcctaaaaacattggtgaattgagcagtttaagaaaggtggacatgaggggttgcgacgaagtgaaagagctgcctccatcagtttcggatcttcatcagttagaggaagtgatatgcaaccgtgaacgcaaaggcaggttatggaaaccctttcgacccaccctcacaaacctgagcgtggtggtgattcctcgaacccgaccaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

782

Amino Acids

89.96

Weight (kDa)

8.85

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 71, 489
Acc36I ACCTGC 2 cut(s) 352, 2265
AccB1I GGYRCC 1 cut(s) 133
AccB7I CCANNNNNTGG 3 cut(s) 172, 905, 1485
AccI GTMKAC 1 cut(s) 1363
AccII CGCG 2 cut(s) 259, 1637
AciI CCGC 5 cut(s) 423, 524, 1635, 1934, 2128
AclWI GGATC 3 cut(s) 826, 1246, 2235
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 8 cut(s) 79, 623, 893, 901, 1699, 1876, 1925, 2017
AcuI CTGAAG 1 cut(s) 1269
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 7 cut(s) 281, 287, 442, 738, 1644, 1668, 2037
AfeI AGCGCT 1 cut(s) 989
AfiI CCNNNNNNNGG 8 cut(s) 117, 172, 187, 310, 905, 1485, 1513, 2317
AjnI CCWGG 4 cut(s) 116, 290, 559, 1233
AjuI GAANNNNNNNTTGG 2 cut(s) 892, 924
Alw21I GWGCWC 3 cut(s) 234, 248, 552
Alw26I GTCTC 5 cut(s) 99, 329, 1145, 1175, 1757
AlwI GGATC 3 cut(s) 826, 1246, 2235
Aor51HI AGCGCT 1 cut(s) 989
AoxI GGCC 3 cut(s) 3, 223, 1562
ApeKI GCWGC 3 cut(s) 1179, 1941, 2209
ApoI RAATTY 8 cut(s) 79, 623, 893, 901, 1699, 1876, 1925, 2017
Asp700I GAANNNNTTC 3 cut(s) 35, 831, 1161
AspLEI GCGC 3 cut(s) 157, 990, 2126
AspS9I GGNCC 4 cut(s) 491, 796, 1231, 1563
AsuC2I CCSGG 1 cut(s) 1427
AsuHPI GGTGA 3 cut(s) 1496, 2165, 2335
AsuII TTCGAA 1 cut(s) 39
AsuNHI GCTAGC 1 cut(s) 1399
AvaII GGWCC 3 cut(s) 491, 796, 1231
BanI GGYRCC 1 cut(s) 133
BanII GRGCYC 3 cut(s) 234, 269, 1616
BarI GAAGNNNNNNTAC 2 cut(s) 729, 761
BauI CACGAG 1 cut(s) 1828
BbsI GAAGAC 3 cut(s) 69, 781, 1257
Bbv12I GWGCWC 3 cut(s) 234, 248, 552
BbvI GCAGC 3 cut(s) 1191, 1928, 2196
BccI CCATC 5 cut(s) 145, 255, 1333, 2087, 2224
BceAI ACGGC 3 cut(s) 485, 1696, 1965
BcgI CGANNNNNNTGC 2 cut(s) 529, 563
BciT130I CCWGG 4 cut(s) 118, 292, 561, 1235
BclI TGATCA 1 cut(s) 141
BcnI CCSGG 1 cut(s) 1427
BcoDI GTCTC 5 cut(s) 99, 329, 1145, 1175, 1757
BfaI CTAG 4 cut(s) 26, 1142, 1400, 1421
BfmI CTRYAG 1 cut(s) 1089
BfoI RGCGCY 1 cut(s) 991
BfuAI ACCTGC 2 cut(s) 352, 2265
BglII AGATCT 1 cut(s) 887
BisI GCNGC 3 cut(s) 1180, 1942, 2210
BlpI GCTNAGC 1 cut(s) 1416
BlsI GCNGC 3 cut(s) 1181, 1943, 2211
BmcAI AGTACT 1 cut(s) 2037
Bme1390I CCNGG 5 cut(s) 118, 292, 561, 1235, 1427
Bme18I GGWCC 3 cut(s) 491, 796, 1231
BmgT120I GGNCC 4 cut(s) 491, 796, 1231, 1563
BmiI GGNNCC 4 cut(s) 135, 266, 717, 1613
BmrFI CCNGG 5 cut(s) 118, 292, 561, 1235, 1427
BmrI ACTGGG 1 cut(s) 2067
BmsI GCATC 5 cut(s) 396, 744, 1177, 1855, 2111
BmtI GCTAGC 1 cut(s) 1403
BmuI ACTGGG 1 cut(s) 2067
BpiI GAAGAC 3 cut(s) 69, 781, 1257
BplI GAGNNNNNCTC 2 cut(s) 993, 1025
BpmI CTGGAG 2 cut(s) 582, 1120
Bpu10I CCTNAGC 1 cut(s) 2312
Bpu1102I GCTNAGC 1 cut(s) 1416
Bpu14I TTCGAA 1 cut(s) 39
BpuEI CTTGAG 2 cut(s) 868, 997
BpuMI CCSGG 1 cut(s) 1427
Bsa29I ATCGAT 1 cut(s) 375
BsaBI GATNNNNATC 3 cut(s) 396, 1970, 2232
BsaHI GRCGYC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 1757
BsaJI CCNNGG 3 cut(s) 6, 467, 1234
BsaWI WCCGGW 1 cut(s) 712
BsaXI ACNNNNNCTCC 2 cut(s) 1603, 1633
Bsc4I CCNNNNNNNGG 8 cut(s) 117, 172, 187, 310, 905, 1485, 1513, 2317
Bse1I ACTGG 4 cut(s) 198, 489, 1674, 2073
Bse3DI GCAATG 1 cut(s) 2130
Bse8I GATNNNNATC 3 cut(s) 396, 1970, 2232
BseBI CCWGG 4 cut(s) 118, 292, 561, 1235
BseCI ATCGAT 1 cut(s) 375
BseDI CCNNGG 3 cut(s) 6, 467, 1234
BseGI GGATG 6 cut(s) 532, 759, 940, 988, 1870, 2126
BseJI GATNNNNATC 3 cut(s) 396, 1970, 2232
BseLI CCNNNNNNNGG 8 cut(s) 117, 172, 187, 310, 905, 1485, 1513, 2317
BseMI GCAATG 1 cut(s) 2130
BseMII CTCAG 2 cut(s) 2030, 2303
BseNI ACTGG 4 cut(s) 198, 489, 1674, 2073
BseXI GCAGC 3 cut(s) 1191, 1928, 2196
Bsh1236I CGCG 2 cut(s) 259, 1637
BshFI GGCC 3 cut(s) 5, 225, 1564
BshNI GGYRCC 1 cut(s) 133
BshVI ATCGAT 1 cut(s) 375
BsiHKAI GWGCWC 3 cut(s) 234, 248, 552
BsiSI CCGG 2 cut(s) 713, 1427
BslFI GGGAC 1 cut(s) 1361
BslI CCNNNNNNNGG 8 cut(s) 117, 172, 187, 310, 905, 1485, 1513, 2317
BsmAI GTCTC 5 cut(s) 99, 329, 1145, 1175, 1757
BsmBI CGTCTC 2 cut(s) 329, 1145
BsmFI GGGAC 1 cut(s) 1361
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 3 cut(s) 5, 225, 1564
Bso31I GGTCTC 1 cut(s) 1757
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 5 cut(s) 234, 248, 269, 552, 1616
Bsp1407I TGTACA 1 cut(s) 1642
Bsp143I GATC 7 cut(s) 69, 141, 372, 818, 887, 1238, 2227
Bsp1720I GCTNAGC 1 cut(s) 1416
BspACI CCGC 5 cut(s) 423, 524, 1635, 1934, 2128
BspANI GGCC 3 cut(s) 5, 225, 1564
BspCNI CTCAG 2 cut(s) 2031, 2304
BspDI ATCGAT 1 cut(s) 375
BspFNI CGCG 2 cut(s) 259, 1637
BspHI TCATGA 1 cut(s) 1270
BspLI GGNNCC 4 cut(s) 135, 266, 717, 1613
BspMI ACCTGC 2 cut(s) 352, 2265
BspOI GCTAGC 1 cut(s) 1403
BspPI GGATC 3 cut(s) 826, 1246, 2235
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 133
BspTNI GGTCTC 1 cut(s) 1757
BsrDI GCAATG 1 cut(s) 2130
BsrGI TGTACA 1 cut(s) 1642
BsrI ACTGG 4 cut(s) 198, 489, 1674, 2073
BssECI CCNNGG 3 cut(s) 6, 467, 1234
BssMI GATC 7 cut(s) 69, 141, 372, 818, 887, 1238, 2227
BssNI GRCGYC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 1828
Bst2BI CACGAG 1 cut(s) 1828
Bst2UI CCWGG 4 cut(s) 118, 292, 561, 1235
Bst4CI ACNGT 7 cut(s) 491, 652, 1060, 1328, 1361, 1368, 2261
Bst6I CTCTTC 2 cut(s) 104, 603
BstACI GRCGYC 1 cut(s) 108
BstAUI TGTACA 1 cut(s) 1642
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 4 cut(s) 1401, 1519, 1635, 2128
BstDEI CTNAG 5 cut(s) 1183, 1416, 2029, 2039, 2312
BstDSI CCRYGG 2 cut(s) 6, 467
BstF5I GGATG 6 cut(s) 532, 759, 940, 988, 1870, 2126
BstFNI CGCG 2 cut(s) 259, 1637
BstH2I RGCGCY 1 cut(s) 991
BstHHI GCGC 3 cut(s) 157, 990, 2126
BstKTI GATC 7 cut(s) 72, 144, 375, 821, 890, 1241, 2230
BstMAI GTCTC 5 cut(s) 99, 329, 1145, 1175, 1757
BstMBI GATC 7 cut(s) 69, 141, 372, 818, 887, 1238, 2227
BstMWI GCNNNNNNNGC 5 cut(s) 41, 346, 1396, 1570, 2132
BstNI CCWGG 4 cut(s) 118, 292, 561, 1235
BstSCI CCNGG 5 cut(s) 116, 290, 559, 1233, 1425
BstSFI CTRYAG 1 cut(s) 1089
BstUI CGCG 2 cut(s) 259, 1637
BstV1I GCAGC 3 cut(s) 1191, 1928, 2196
BstV2I GAAGAC 3 cut(s) 69, 781, 1257
BstX2I RGATCY 3 cut(s) 887, 1238, 2227
BstYI RGATCY 3 cut(s) 887, 1238, 2227
Bsu15I ATCGAT 1 cut(s) 375
BsuRI GGCC 3 cut(s) 5, 225, 1564
BsuTUI ATCGAT 1 cut(s) 375
BtgI CCRYGG 2 cut(s) 6, 467
BtgZI GCGATG 1 cut(s) 274
BtsCI GGATG 6 cut(s) 532, 759, 940, 988, 1870, 2126
BtsI GCAGTG 2 cut(s) 51, 552
BtsIMutI CAGTG 4 cut(s) 51, 137, 552, 1065
BveI ACCTGC 2 cut(s) 352, 2265
Cac8I GCNNGC 4 cut(s) 1401, 1519, 1635, 2128
CciI TCATGA 1 cut(s) 1270
CfoI GCGC 3 cut(s) 157, 990, 2126
Cfr13I GGNCC 4 cut(s) 491, 796, 1231, 1563
ClaI ATCGAT 1 cut(s) 375
CseI GACGC 2 cut(s) 116, 346
Csp6I GTAC 7 cut(s) 280, 286, 441, 737, 1643, 1667, 2036
CviAII CATG 5 cut(s) 214, 1271, 1382, 1821, 2182
CviQI GTAC 7 cut(s) 280, 286, 441, 737, 1643, 1667, 2036
DdeI CTNAG 5 cut(s) 1183, 1416, 2029, 2039, 2312
DpnI GATC 7 cut(s) 71, 143, 374, 820, 889, 1240, 2229
DpnII GATC 7 cut(s) 69, 141, 372, 818, 887, 1238, 2227
DraI TTTAAA 3 cut(s) 204, 924, 1959
DrdI GACNNNNNNGTC 2 cut(s) 71, 489
DseDI GACNNNNNNGTC 2 cut(s) 71, 489
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 104, 603
EarI CTCTTC 2 cut(s) 104, 603
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 3 cut(s) 234, 269, 1616
Eco31I GGTCTC 1 cut(s) 1757
Eco32I GATATC 1 cut(s) 1809
Eco47I GGWCC 3 cut(s) 491, 796, 1231
Eco47III AGCGCT 1 cut(s) 989
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 1269
EcoICRI GAGCTC 1 cut(s) 232
EcoRII CCWGG 4 cut(s) 116, 290, 559, 1233
EcoRV GATATC 1 cut(s) 1809
EcoT22I ATGCAT 1 cut(s) 1870
EcoT38I GRGCYC 3 cut(s) 234, 269, 1616
Esp3I CGTCTC 2 cut(s) 329, 1145
FaeI CATG 5 cut(s) 217, 1274, 1385, 1824, 2185
FalI AAGNNNNNCTT 8 cut(s) 83, 115, 1505, 1537, 1914, 1946, 2087, 2119
FaqI GGGAC 1 cut(s) 1361
FatI CATG 5 cut(s) 213, 1270, 1381, 1820, 2181
FauI CCCGC 3 cut(s) 430, 1642, 2135
FauNDI CATATG 2 cut(s) 741, 2114
FbaI TGATCA 1 cut(s) 141
FblI GTMKAC 1 cut(s) 1363
Fnu4HI GCNGC 3 cut(s) 1180, 1942, 2210
FokI GGATG 6 cut(s) 539, 766, 947, 995, 1877, 2133
FriOI GRGCYC 3 cut(s) 234, 269, 1616
Fsp4HI GCNGC 3 cut(s) 1180, 1942, 2210
FspBI CTAG 4 cut(s) 26, 1142, 1400, 1421
GlaI GCGC 3 cut(s) 156, 989, 2125
GluI GCNGC 3 cut(s) 1180, 1942, 2210
GsuI CTGGAG 2 cut(s) 582, 1120
HaeII RGCGCY 1 cut(s) 991
HaeIII GGCC 3 cut(s) 5, 225, 1564
HapII CCGG 2 cut(s) 713, 1427
HgaI GACGC 2 cut(s) 116, 346
HhaI GCGC 3 cut(s) 157, 990, 2126
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 5 cut(s) 217, 1274, 1385, 1824, 2185
Hin6I GCGC 3 cut(s) 155, 988, 2124
HinP1I GCGC 3 cut(s) 155, 988, 2124
HincII GTYRAC 3 cut(s) 238, 1315, 2026
HindII GTYRAC 3 cut(s) 238, 1315, 2026
HindIII AAGCTT 3 cut(s) 198, 515, 2066
HpaII CCGG 2 cut(s) 713, 1427
HphI GGTGA 3 cut(s) 1496, 2165, 2335
Hpy166II GTNNAC 8 cut(s) 238, 443, 1073, 1315, 1364, 2026, 2179, 2264
Hpy8I GTNNAC 8 cut(s) 238, 443, 1073, 1315, 1364, 2026, 2179, 2264
Hpy99I CGWCG 2 cut(s) 110, 2198
HpyAV CCTTC 5 cut(s) 181, 280, 1314, 1657, 1838
HpyCH4III ACNGT 7 cut(s) 491, 652, 1060, 1328, 1361, 1368, 2261
HpyCH4IV ACGT 1 cut(s) 1993
HpyCH4V TGCA 9 cut(s) 349, 361, 1035, 1208, 1573, 1603, 1868, 1944, 2256
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 346, 1396, 1570, 2132
HpyF3I CTNAG 5 cut(s) 1183, 1416, 2029, 2039, 2312
HpySE526I ACGT 1 cut(s) 1993
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 5 cut(s) 217, 1274, 1385, 1824, 2185
HspAI GCGC 3 cut(s) 155, 988, 2124
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 7 cut(s) 69, 141, 372, 818, 887, 1238, 2227
LmnI GCTCC 3 cut(s) 264, 562, 1611
Lsp1109I GCAGC 3 cut(s) 1191, 1928, 2196
LweI GCATC 5 cut(s) 396, 744, 1177, 1855, 2111
MaeI CTAG 4 cut(s) 26, 1142, 1400, 1421
MaeII ACGT 1 cut(s) 1993
MaeIII GTNAC 9 cut(s) 877, 1223, 1372, 1502, 1622, 1719, 1823, 1989, 1994
MalI GATC 7 cut(s) 71, 143, 374, 820, 889, 1240, 2229
MboI GATC 7 cut(s) 69, 141, 372, 818, 887, 1238, 2227
MfeI CAATTG 1 cut(s) 1209
MflI RGATCY 3 cut(s) 887, 1238, 2227
MhlI GDGCHC 5 cut(s) 234, 248, 269, 552, 1616
MlyI GAGTC 2 cut(s) 219, 441
MmeI TCCRAC 4 cut(s) 312, 460, 1045, 1842
Mph1103I ATGCAT 1 cut(s) 1870
MroXI GAANNNNTTC 3 cut(s) 35, 831, 1161
MslI CAYNNNNRTG 1 cut(s) 1283
MspI CCGG 2 cut(s) 713, 1427
MspR9I CCNGG 5 cut(s) 118, 292, 561, 1235, 1427
MunI CAATTG 1 cut(s) 1209
Mva1269I GAATGC 1 cut(s) 35
MvaI CCWGG 4 cut(s) 118, 292, 561, 1235
MvnI CGCG 2 cut(s) 259, 1637
MwoI GCNNNNNNNGC 5 cut(s) 41, 346, 1396, 1570, 2132
NciI CCSGG 1 cut(s) 1427
NdeI CATATG 2 cut(s) 741, 2114
NdeII GATC 7 cut(s) 69, 141, 372, 818, 887, 1238, 2227
NheI GCTAGC 1 cut(s) 1399
NlaIII CATG 5 cut(s) 217, 1274, 1385, 1824, 2185
NlaIV GGNNCC 4 cut(s) 135, 266, 717, 1613
NmuCI GTSAC 3 cut(s) 1502, 1823, 1994
NsiI ATGCAT 1 cut(s) 1870
NspV TTCGAA 1 cut(s) 39
PagI TCATGA 1 cut(s) 1270
PctI GAATGC 1 cut(s) 35
PdmI GAANNNNTTC 3 cut(s) 35, 831, 1161
PfeI GAWTC 9 cut(s) 314, 353, 698, 827, 1130, 1297, 1737, 1951, 2326
PflMI CCANNNNNTGG 3 cut(s) 172, 905, 1485
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 3 cut(s) 1181, 1943, 2211
PleI GAGTC 2 cut(s) 218, 441
PpsI GAGTC 2 cut(s) 218, 441
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 4 cut(s) 116, 290, 559, 1233
PspGI CCWGG 4 cut(s) 116, 290, 559, 1233
PspN4I GGNNCC 4 cut(s) 135, 266, 717, 1613
PspPI GGNCC 4 cut(s) 491, 796, 1231, 1563
PsuI RGATCY 3 cut(s) 887, 1238, 2227
RsaI GTAC 7 cut(s) 281, 287, 442, 738, 1644, 1668, 2037
RsaNI GTAC 7 cut(s) 280, 286, 441, 737, 1643, 1667, 2036
RseI CAYNNNNRTG 1 cut(s) 1283
SacI GAGCTC 1 cut(s) 234
SatI GCNGC 3 cut(s) 1180, 1942, 2210
Sau3AI GATC 7 cut(s) 69, 141, 372, 818, 887, 1238, 2227
Sau96I GGNCC 4 cut(s) 491, 796, 1231, 1563
ScaI AGTACT 1 cut(s) 2037
SchI GAGTC 2 cut(s) 219, 441
ScrFI CCNGG 5 cut(s) 118, 292, 561, 1235, 1427
SduI GDGCHC 5 cut(s) 234, 248, 269, 552, 1616
SfaNI GCATC 5 cut(s) 396, 744, 1177, 1855, 2111
SfcI CTRYAG 1 cut(s) 1089
SfuI TTCGAA 1 cut(s) 39
SinI GGWCC 3 cut(s) 491, 796, 1231
SmiMI CAYNNNNRTG 1 cut(s) 1283
SmlI CTYRAG 2 cut(s) 883, 1012
SmoI CTYRAG 2 cut(s) 883, 1012
SsiI CCGC 5 cut(s) 423, 524, 1635, 1934, 2128
SspI AATATT 1 cut(s) 637
SspMI CTAG 4 cut(s) 26, 1142, 1400, 1421
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 5 cut(s) 116, 290, 559, 1233, 1425
TaaI ACNGT 7 cut(s) 491, 652, 1060, 1328, 1361, 1368, 2261
TaiI ACGT 1 cut(s) 1996
TatI WGTACW 5 cut(s) 279, 440, 736, 1642, 2035
TfiI GAWTC 9 cut(s) 314, 353, 698, 827, 1130, 1297, 1737, 1951, 2326
TscAI CASTG 4 cut(s) 51, 144, 559, 1065
TseFI GTSAC 3 cut(s) 1502, 1823, 1994
TseI GCWGC 3 cut(s) 1179, 1941, 2209
Tsp45I GTSAC 3 cut(s) 1502, 1823, 1994
TspGWI ACGGA 3 cut(s) 691, 1053, 1169
TspRI CASTG 4 cut(s) 51, 144, 559, 1065
Van91I CCANNNNNTGG 3 cut(s) 172, 905, 1485
VpaK11BI GGWCC 3 cut(s) 491, 796, 1231
XapI RAATTY 8 cut(s) 79, 623, 893, 901, 1699, 1876, 1925, 2017
XbaI TCTAGA 2 cut(s) 25, 1141
XmiI GTMKAC 1 cut(s) 1363
XmnI GAANNNNTTC 3 cut(s) 35, 831, 1161
XspI CTAG 4 cut(s) 26, 1142, 1400, 1421
ZrmI AGTACT 1 cut(s) 2037
Zsp2I ATGCAT 1 cut(s) 1870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.