Rroxscaffold_6G00401290

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000039
Physical Location & Seq
Forward (+)
23614864 .. 23618787
3924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401290.1

Sequence Viewer

Length: 2424 bp
ATGGCATTGATAGGAGGAGCGGGTTTGTCAGTAACATTTTGGACGCTTTGTGATTCTGTTAAGCAAGTGAAGGAGCAGTTCAAACCCCAACTCGGGGATATCAAATCCACTCTGGACTCTTTGGAACCACTGATCAAAGAGATGGCAGAGTGTGAGAAGGAATTGGGTGGTCAAGAGGAGGAACTAGAGAATCTTAGAGTGGAAATGGACGAAGGAGTGGAGCTTATTCGCAAGTGCTCGAAAGCGAGCAGGTTCAAGCAGTATAAGTATGGCAGCCGACTTGTTAAATTGAGCAAGTCAATTCAAAGATTGTTGGGGATTCTCAAAGTGCAGGGAATAAGGGATGTGAAGAAGGCATTGGTTTCAGTGAGGAACATTGAGAATGTTGTGCAGAGAATTGAAGGGAATTATGTGATACAGAACAATCAGCCTGAAAAAATTGAAGGGTGGTGTGCTGTGCCTGAGCCTCCAACAATTACGGTTGGATTGGATGTGCCTTTGTGGGAATTGAAGAAGAAGCTCTTTACTGACGGAGTTTCGATGGTGATACTTACTGCTCCTGGAGGATGTGGAAAAACTACACTGGCAACAAAGTTGTGCCAAGATGCAGAGGTCAAAGATAAATTCAAGAGCAATGTCTTCTTTGTTACTGTTTCAAAGAAGCCCAACTTATACCTAATTGTACAAGAGCTGTATCATGGAACGGGTGGCCAGGTCCCCGATTTCCAAAATGAAGCAACTGCAGTTAGCTGGCTGCAGCAATTTCTGAAGCAAACAGGACAAAATCCTATGTTGTTGGTCCTAGATGATGTCTGGGCAGGATCGGAATTCATTCTTGAGAAGTTTGATGAATTAAAGATGTCAGATTACAAGATATTGGTAACATCAAGGTCTGCTTTTCCAAGATTTGGTTCTCCATATTATCTAGAATGTTTGAACGATGAAGATGCAATGGCACTTTTTCGCCATGCAGCATCCTTAGGAGACAGGAGCTCTTATATTTCAGAAGATCTTCCAAGAAAGATAGTAGAACGTTGTATGGGATTTCCACTTGCAATTACAGCTGTTGGAAGATCACTTTGCGGGCAGCCAATAGAGATTTGGCAAAAAAGAGTATTGGAATGGTCTAGAGGTTCTTCTGTTCTTGAGTCTGAACATGATTTGCTTGATTACCTCCAGAGTAGCTTAGATGCTTTGGATGGAGAGAAGTCTCTTATCAGGGAATGCTTCATAGACCTTGGTTTATTTCCCGAAGATCAAAGAATCTCTGCTACTGTCCTCATCGATATGTGGGCAGAGTTATATGGCATAGAAGACATTTCGTCCATTGTGAATCTCTATGAACTTGCCTCTCGGAGTTTGGCTAATCTGGTAGTCACAAGGAACGACAACGAGGATGGCGATGGCTATTACACTGAGCACTTTGTTACACAGCTTGACATGCTTAGGGAGTTGGCTATCCAACAGATTAGTCGGGAACCACTACAACAGAGAATGAGACTTATGATTGACATTAGTGGAGACAACTTTCCAATGTGGTTGAAAGAACAAAAGTATCAATACCTCATCACTCGCGTTGTATCTATCTCGACAGACGAAGAGTTCTCATCTAAATGGCAAAACTTGCAACTACCAGAAGCAGAGGTTTTGATTTTGAACTTTCAGACCAAGTATTATGCCTTACCTGAGTTTGTGGAGAAAATGAATAAACTGAAGACTCTAGCACTCACAAGTTCGGGTATCAGTCCTGCTGAGTTGAATAACTTTCAACTAGTTGATTCGAAACCAAATTTAAAGAGAATCAGACTAGAACGAATTTCATTTCCTTCGATAAGCAGGTATCCTATACAGTTGAAAAGTTTGAAAAAGATTTCTCTATTCATGTGCAGCATCGGCCAAGGTTTTGGTAACGGTTACATACATATATCAGAGGCGTTTCCAAACCTTGTTGAAATGAATATGGATTACTGCAATGATTTGGTGGAGCTGCCTGCCGATCTCTGTGACCTTATTCAATTGAAGAAACTCAGTGTCACCAATTCTCATAAGCTCTCTGTCTTACCTGAAGACATTGGAAATCTAGTAAATTTAGAGCTGCTGAGGCTTAGGTGTTGTACAGACTTGTCAGAGTTACCCGGCTCGATTAGGAACCTCAAGAACTTAAACTTGCTTGACATATCAAATTGCTTTAGCCTTAAGGAATTGCCTGAAGACATTGGAGAAATGTGCAGTTTAGAGAAGCTCAACATGAGACAGTGCTCGAGATTGAATGAGTTGCCTTCATCAGTTGTGGATCTTGAAAAGTTAATGGAAGTGACATGTGATGAAGAGACAGAAATCTTATGGGAGCCCTTCTTACCGTATCTCAGGAACATACACATAAAGGTTGTGAAAGAAGATATGAACCTGAATTGGCTCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

807

Amino Acids

91.9

Weight (kDa)

5.06

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 3 - 126 3.6e-18 Arabidopsis broad-spectrum mildew resistance protein RPW8
NB-ARC PF00931 169 - 324 1.6e-15 NB-ARC domain
AAA_22 PF13401 180 - 275 5.7e-07 AAA domain
LRR_14 PF23598 646 - 729 1.2e-08 Leucine-rich repeat region
LRR_14 PF23598 718 - 780 6.6e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 240, 1827
AccB7I CCANNNNNTGG 1 cut(s) 908
AccBSI CCGCTC 1 cut(s) 20
AccII CGCG 1 cut(s) 1575
AciI CCGC 2 cut(s) 20, 1083
AclI AACGTT 1 cut(s) 1033
AclWI GGATC 2 cut(s) 829, 2301
AcoI YGGCCR 2 cut(s) 709, 1894
AcsI RAATTY 5 cut(s) 623, 827, 1789, 1815, 2086
AcuI CTGAAG 4 cut(s) 788, 1733, 2085, 2229
AfaI GTAC 2 cut(s) 684, 2116
AfiI CCNNNNNNNGG 4 cut(s) 92, 93, 94, 908
AflII CTTAAG 1 cut(s) 2195
AflIII ACRYGT 1 cut(s) 2318
AhdI GACNNNNNGTC 1 cut(s) 1321
AhlI ACTAGT 1 cut(s) 1771
AjnI CCWGG 2 cut(s) 559, 711
AjuI GAANNNNNNNTTGG 4 cut(s) 341, 373, 895, 927
Alw21I GWGCWC 4 cut(s) 239, 995, 1422, 2261
Alw26I GTCTC 6 cut(s) 978, 1215, 1492, 1515, 2245, 2324
AlwI GGATC 2 cut(s) 829, 2301
Ama87I CYCGRG 2 cut(s) 92, 2260
AoxI GGCC 2 cut(s) 709, 1894
ApeKI GCWGC 8 cut(s) 273, 754, 757, 971, 1087, 1887, 1987, 2095
ApoI RAATTY 5 cut(s) 623, 827, 1789, 1815, 2086
Asp700I GAANNNNTTC 2 cut(s) 831, 1011
AspS9I GGNCC 2 cut(s) 715, 799
AsuC2I CCSGG 1 cut(s) 2136
AsuHPI GGTGA 2 cut(s) 556, 2026
AsuII TTCGAA 1 cut(s) 1781
AvaI CYCGRG 2 cut(s) 92, 2260
AvaII GGWCC 2 cut(s) 715, 799
AxyI CCTNAGG 1 cut(s) 979
BaeI ACNNNNGTAYC 2 cut(s) 1538, 1571
BalI TGGCCA 1 cut(s) 711
BanII GRGCYC 2 cut(s) 995, 2352
BbsI GAAGAC 5 cut(s) 631, 1320, 1721, 2073, 2217
Bbv12I GWGCWC 4 cut(s) 239, 995, 1422, 2261
BbvCI CCTCAGC 1 cut(s) 2099
BbvI GCAGC 8 cut(s) 285, 741, 769, 983, 1099, 1899, 1974, 2082
BccI CCATC 5 cut(s) 136, 535, 1193, 1391, 1397
BcgI CGANNNNNNTGC 2 cut(s) 929, 963
BciT130I CCWGG 2 cut(s) 561, 713
BciVI GTATCC 1 cut(s) 1851
BclI TGATCA 1 cut(s) 132
BcnI CCSGG 1 cut(s) 2136
BcoDI GTCTC 6 cut(s) 978, 1215, 1492, 1515, 2245, 2324
BcuI ACTAGT 1 cut(s) 1771
BfaI CTAG 9 cut(s) 185, 803, 926, 1128, 1721, 1772, 1808, 2081, 2422
BfmI CTRYAG 2 cut(s) 741, 755
BfrI CTTAAG 1 cut(s) 2195
BfuAI ACCTGC 2 cut(s) 240, 1827
BfuI GTATCC 1 cut(s) 1851
BglII AGATCT 1 cut(s) 1009
BisI GCNGC 8 cut(s) 274, 755, 758, 972, 1088, 1888, 1988, 2096
BlsI GCNGC 8 cut(s) 275, 756, 759, 973, 1089, 1889, 1989, 2097
Bme1390I CCNGG 3 cut(s) 561, 713, 2136
Bme18I GGWCC 2 cut(s) 715, 799
BmeRI GACNNNNNGTC 1 cut(s) 1321
BmeT110I CYCGRG 2 cut(s) 92, 2260
BmgT120I GGNCC 2 cut(s) 715, 799
BmiI GGNNCC 6 cut(s) 126, 717, 1479, 2150, 2349, 2417
BmrFI CCNGG 3 cut(s) 561, 713, 2136
BmsI GCATC 5 cut(s) 595, 937, 983, 1180, 1899
BpiI GAAGAC 5 cut(s) 631, 1320, 1721, 2073, 2217
BpmI CTGGAG 2 cut(s) 582, 1160
Bpu10I CCTNAGC 4 cut(s) 462, 1445, 2099, 2105
Bpu14I TTCGAA 1 cut(s) 1781
BpuEI CTTGAG 3 cut(s) 857, 1166, 2138
BpuMI CCSGG 1 cut(s) 2136
Bsa29I ATCGAT 1 cut(s) 1284
BsaJI CCNNGG 2 cut(s) 1237, 1897
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 93, 94, 908
Bse1I ACTGG 1 cut(s) 588
Bse21I CCTNAGG 1 cut(s) 979
Bse3DI GCAATG 3 cut(s) 640, 957, 1978
BseBI CCWGG 2 cut(s) 561, 713
BseCI ATCGAT 1 cut(s) 1284
BseDI CCNNGG 2 cut(s) 1237, 1897
BseGI GGATG 6 cut(s) 349, 496, 572, 974, 1204, 1402
BseLI CCNNNNNNNGG 4 cut(s) 92, 93, 94, 908
BseMI GCAATG 3 cut(s) 640, 957, 1978
BseMII CTCAG 7 cut(s) 453, 1407, 1677, 1743, 2041, 2090, 2380
BseNI ACTGG 1 cut(s) 588
BseRI GAGGAG 2 cut(s) 30, 191
BseXI GCAGC 8 cut(s) 285, 741, 769, 983, 1099, 1899, 1974, 2082
BsgI GTGCAG 4 cut(s) 350, 410, 1906, 2248
Bsh1236I CGCG 1 cut(s) 1575
BshFI GGCC 2 cut(s) 711, 1896
BshVI ATCGAT 1 cut(s) 1284
BsiHKAI GWGCWC 4 cut(s) 239, 995, 1422, 2261
BsiHKCI CYCGRG 2 cut(s) 92, 2260
BsiSI CCGG 1 cut(s) 2136
BslFI GGGAC 1 cut(s) 701
BslI CCNNNNNNNGG 4 cut(s) 92, 93, 94, 908
BsmAI GTCTC 6 cut(s) 978, 1215, 1492, 1515, 2245, 2324
BsmFI GGGAC 1 cut(s) 701
BsmI GAATGC 1 cut(s) 1229
BsnI GGCC 2 cut(s) 711, 1896
BsoBI CYCGRG 2 cut(s) 92, 2260
Bsp119I TTCGAA 1 cut(s) 1781
Bsp1286I GDGCHC 5 cut(s) 239, 995, 1422, 2261, 2352
Bsp1407I TGTACA 2 cut(s) 682, 2114
Bsp143I GATC 7 cut(s) 132, 821, 1009, 1073, 1255, 1996, 2293
BspACI CCGC 2 cut(s) 20, 1083
BspANI GGCC 2 cut(s) 711, 1896
BspCNI CTCAG 7 cut(s) 454, 1408, 1678, 1744, 2040, 2091, 2379
BspDI ATCGAT 1 cut(s) 1284
BspFNI CGCG 1 cut(s) 1575
BspLI GGNNCC 6 cut(s) 126, 717, 1479, 2150, 2349, 2417
BspMAI CTGCAG 2 cut(s) 745, 759
BspMI ACCTGC 2 cut(s) 240, 1827
BspPI GGATC 2 cut(s) 829, 2301
BspT104I TTCGAA 1 cut(s) 1781
BspTI CTTAAG 1 cut(s) 2195
BsrBI CCGCTC 1 cut(s) 20
BsrDI GCAATG 3 cut(s) 640, 957, 1978
BsrGI TGTACA 2 cut(s) 682, 2114
BsrI ACTGG 1 cut(s) 588
BssECI CCNNGG 2 cut(s) 1237, 1897
BssMI GATC 7 cut(s) 132, 821, 1009, 1073, 1255, 1996, 2293
BssT1I CCWWGG 2 cut(s) 1237, 1897
Bst2UI CCWGG 2 cut(s) 561, 713
Bst4CI ACNGT 7 cut(s) 481, 652, 1276, 1851, 1913, 2256, 2361
Bst6I CTCTTC 2 cut(s) 1593, 2322
BstAFI CTTAAG 1 cut(s) 2195
BstAPI GCANNNNNTGC 1 cut(s) 1624
BstAUI TGTACA 2 cut(s) 682, 2114
BstBI TTCGAA 1 cut(s) 1781
BstC8I GCNNGC 4 cut(s) 247, 752, 1085, 1992
BstF5I GGATG 6 cut(s) 349, 496, 572, 974, 1204, 1402
BstFNI CGCG 1 cut(s) 1575
BstKTI GATC 7 cut(s) 135, 824, 1012, 1076, 1258, 1999, 2296
BstMAI GTCTC 6 cut(s) 978, 1215, 1492, 1515, 2245, 2324
BstMBI GATC 7 cut(s) 132, 821, 1009, 1073, 1255, 1996, 2293
BstMWI GCNNNNNNNGC 5 cut(s) 1061, 1441, 1624, 1893, 2101
BstNI CCWGG 2 cut(s) 561, 713
BstNSI RCATGY 2 cut(s) 1444, 2322
BstSCI CCNGG 3 cut(s) 559, 711, 2134
BstSFI CTRYAG 2 cut(s) 741, 755
BstUI CGCG 1 cut(s) 1575
BstV1I GCAGC 8 cut(s) 285, 741, 769, 983, 1099, 1899, 1974, 2082
BstV2I GAAGAC 5 cut(s) 631, 1320, 1721, 2073, 2217
BstX2I RGATCY 2 cut(s) 1009, 2293
BstXI CCANNNNNNTGG 1 cut(s) 1904
BstYI RGATCY 2 cut(s) 1009, 2293
Bsu15I ATCGAT 1 cut(s) 1284
Bsu36I CCTNAGG 1 cut(s) 979
BsuI GTATCC 1 cut(s) 1851
BsuRI GGCC 2 cut(s) 711, 1896
BsuTUI ATCGAT 1 cut(s) 1284
BtgZI GCGATG 1 cut(s) 1416
BtsCI GGATG 6 cut(s) 349, 496, 572, 974, 1204, 1402
BtsIMutI CAGTG 6 cut(s) 128, 372, 581, 1413, 2035, 2261
BveI ACCTGC 2 cut(s) 240, 1827
Cac8I GCNNGC 4 cut(s) 247, 752, 1085, 1992
Cfr13I GGNCC 2 cut(s) 715, 799
ClaI ATCGAT 1 cut(s) 1284
CseI GACGC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 683, 2115
CviAII CATG 7 cut(s) 698, 968, 1157, 1441, 1882, 2248, 2319
CviQI GTAC 2 cut(s) 683, 2115
DpnI GATC 7 cut(s) 134, 823, 1011, 1075, 1257, 1998, 2295
DpnII GATC 7 cut(s) 132, 821, 1009, 1073, 1255, 1996, 2293
DraI TTTAAA 1 cut(s) 1794
DriI GACNNNNNGTC 1 cut(s) 1321
EaeI YGGCCR 2 cut(s) 709, 1894
Eam1104I CTCTTC 2 cut(s) 1593, 2322
Eam1105I GACNNNNNGTC 1 cut(s) 1321
EarI CTCTTC 2 cut(s) 1593, 2322
Ecl136II GAGCTC 1 cut(s) 993
Eco130I CCWWGG 2 cut(s) 1237, 1897
Eco24I GRGCYC 2 cut(s) 995, 2352
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 2 cut(s) 715, 799
Eco53kI GAGCTC 1 cut(s) 993
Eco57I CTGAAG 4 cut(s) 788, 1733, 2085, 2229
Eco81I CCTNAGG 1 cut(s) 979
Eco88I CYCGRG 2 cut(s) 92, 2260
EcoICRI GAGCTC 1 cut(s) 993
EcoO109I RGGNCCY 1 cut(s) 715
EcoRI GAATTC 1 cut(s) 827
EcoRII CCWGG 2 cut(s) 559, 711
EcoRV GATATC 1 cut(s) 100
EcoT14I CCWWGG 2 cut(s) 1237, 1897
EcoT38I GRGCYC 2 cut(s) 995, 2352
ErhI CCWWGG 2 cut(s) 1237, 1897
FaeI CATG 7 cut(s) 701, 971, 1160, 1444, 1885, 2251, 2322
FalI AAGNNNNNCTT 6 cut(s) 506, 538, 653, 685, 880, 912
FaqI GGGAC 1 cut(s) 701
FatI CATG 7 cut(s) 697, 967, 1156, 1440, 1881, 2247, 2318
FauI CCCGC 2 cut(s) 13, 1076
FbaI TGATCA 1 cut(s) 132
Fnu4HI GCNGC 8 cut(s) 274, 755, 758, 972, 1088, 1888, 1988, 2096
FokI GGATG 6 cut(s) 356, 503, 579, 961, 1211, 1409
FriOI GRGCYC 2 cut(s) 995, 2352
Fsp4HI GCNGC 8 cut(s) 274, 755, 758, 972, 1088, 1888, 1988, 2096
FspBI CTAG 9 cut(s) 185, 803, 926, 1128, 1721, 1772, 1808, 2081, 2422
GluI GCNGC 8 cut(s) 274, 755, 758, 972, 1088, 1888, 1988, 2096
GsuI CTGGAG 2 cut(s) 582, 1160
HaeIII GGCC 2 cut(s) 711, 1896
HapII CCGG 1 cut(s) 2136
HgaI GACGC 1 cut(s) 52
Hin1II CATG 7 cut(s) 701, 971, 1160, 1444, 1885, 2251, 2322
HpaII CCGG 1 cut(s) 2136
HphI GGTGA 2 cut(s) 556, 2026
HpyAV CCTTC 9 cut(s) 64, 151, 206, 346, 395, 437, 1836, 2289, 2362
HpyCH4III ACNGT 7 cut(s) 481, 652, 1276, 1851, 1913, 2256, 2361
HpyCH4IV ACGT 1 cut(s) 1033
HpyF10VI GCNNNNNNNGC 5 cut(s) 1061, 1441, 1624, 1893, 2101
HpySE526I ACGT 1 cut(s) 1033
Hsp92II CATG 7 cut(s) 701, 971, 1160, 1444, 1885, 2251, 2322
Ksp22I TGATCA 1 cut(s) 132
Kzo9I GATC 7 cut(s) 132, 821, 1009, 1073, 1255, 1996, 2293
LmnI GCTCC 8 cut(s) 17, 73, 220, 562, 990, 1984, 2347, 2421
Lsp1109I GCAGC 8 cut(s) 285, 741, 769, 983, 1099, 1899, 1974, 2082
LweI GCATC 5 cut(s) 595, 937, 983, 1180, 1899
MaeI CTAG 9 cut(s) 185, 803, 926, 1128, 1721, 1772, 1808, 2081, 2422
MaeII ACGT 1 cut(s) 1033
MalI GATC 7 cut(s) 134, 823, 1011, 1075, 1257, 1998, 2295
MbiI CCGCTC 1 cut(s) 20
MboI GATC 7 cut(s) 132, 821, 1009, 1073, 1255, 1996, 2293
MfeI CAATTG 1 cut(s) 2015
MflI RGATCY 2 cut(s) 1009, 2293
MhlI GDGCHC 5 cut(s) 239, 995, 1422, 2261, 2352
MlsI TGGCCA 1 cut(s) 711
MluNI TGGCCA 1 cut(s) 711
MlyI GAGTC 3 cut(s) 110, 1157, 1711
MmeI TCCRAC 4 cut(s) 463, 494, 1048, 1486
Mox20I TGGCCA 1 cut(s) 711
MroXI GAANNNNTTC 2 cut(s) 831, 1011
MscI TGGCCA 1 cut(s) 711
MseI TTAA 7 cut(s) 60, 285, 854, 1793, 2162, 2196, 2306
MslI CAYNNNNRTG 2 cut(s) 1286, 1612
Msp20I TGGCCA 1 cut(s) 711
MspA1I CMGCKG 1 cut(s) 1064
MspCI CTTAAG 1 cut(s) 2195
MspI CCGG 1 cut(s) 2136
MspR9I CCNGG 3 cut(s) 561, 713, 2136
MunI CAATTG 1 cut(s) 2015
Mva1269I GAATGC 1 cut(s) 1229
MvaI CCWGG 2 cut(s) 561, 713
MvnI CGCG 1 cut(s) 1575
MwoI GCNNNNNNNGC 5 cut(s) 1061, 1441, 1624, 1893, 2101
NciI CCSGG 1 cut(s) 2136
NdeII GATC 7 cut(s) 132, 821, 1009, 1073, 1255, 1996, 2293
NlaIII CATG 7 cut(s) 701, 971, 1160, 1444, 1885, 2251, 2322
NlaIV GGNNCC 6 cut(s) 126, 717, 1479, 2150, 2349, 2417
NmuCI GTSAC 4 cut(s) 1375, 2003, 2032, 2314
NspI RCATGY 2 cut(s) 1444, 2322
NspV TTCGAA 1 cut(s) 1781
PaeR7I CTCGAG 1 cut(s) 2260
PciI ACATGT 1 cut(s) 2318
PcsI WCGNNNNNNNCGW 1 cut(s) 1398
PctI GAATGC 1 cut(s) 1229
PdmI GAANNNNTTC 2 cut(s) 831, 1011
PfeI GAWTC 7 cut(s) 53, 190, 319, 1263, 1333, 1778, 1800
PflMI CCANNNNNTGG 1 cut(s) 908
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 8 cut(s) 275, 756, 759, 973, 1089, 1889, 1989, 2097
PleI GAGTC 3 cut(s) 110, 1156, 1711
PpsI GAGTC 3 cut(s) 110, 1156, 1711
PpuMI RGGWCCY 1 cut(s) 715
PscI ACATGT 1 cut(s) 2318
Psp124BI GAGCTC 1 cut(s) 995
Psp1406I AACGTT 1 cut(s) 1033
Psp5II RGGWCCY 1 cut(s) 715
Psp6I CCWGG 2 cut(s) 559, 711
PspGI CCWGG 2 cut(s) 559, 711
PspN4I GGNNCC 6 cut(s) 126, 717, 1479, 2150, 2349, 2417
PspPI GGNCC 2 cut(s) 715, 799
PspPPI RGGWCCY 1 cut(s) 715
PstI CTGCAG 2 cut(s) 745, 759
PsuI RGATCY 2 cut(s) 1009, 2293
PvuII CAGCTG 1 cut(s) 1064
RsaI GTAC 2 cut(s) 684, 2116
RsaNI GTAC 2 cut(s) 683, 2115
RseI CAYNNNNRTG 2 cut(s) 1286, 1612
SacI GAGCTC 1 cut(s) 995
SaqAI TTAA 7 cut(s) 60, 285, 854, 1793, 2162, 2196, 2306
SatI GCNGC 8 cut(s) 274, 755, 758, 972, 1088, 1888, 1988, 2096
Sau3AI GATC 7 cut(s) 132, 821, 1009, 1073, 1255, 1996, 2293
Sau96I GGNCC 2 cut(s) 715, 799
SchI GAGTC 3 cut(s) 110, 1157, 1711
ScrFI CCNGG 3 cut(s) 561, 713, 2136
SduI GDGCHC 5 cut(s) 239, 995, 1422, 2261, 2352
SfaNI GCATC 5 cut(s) 595, 937, 983, 1180, 1899
SfcI CTRYAG 2 cut(s) 741, 755
Sfr274I CTCGAG 1 cut(s) 2260
SfuI TTCGAA 1 cut(s) 1781
SinI GGWCC 2 cut(s) 715, 799
SlaI CTCGAG 1 cut(s) 2260
SmiMI CAYNNNNRTG 2 cut(s) 1286, 1612
SmlI CTYRAG 5 cut(s) 836, 1145, 2153, 2195, 2260
SmoI CTYRAG 5 cut(s) 836, 1145, 2153, 2195, 2260
SpeI ACTAGT 1 cut(s) 1771
SsiI CCGC 2 cut(s) 20, 1083
SspMI CTAG 9 cut(s) 185, 803, 926, 1128, 1721, 1772, 1808, 2081, 2422
SstI GAGCTC 1 cut(s) 995
StyD4I CCNGG 3 cut(s) 559, 711, 2134
StyI CCWWGG 2 cut(s) 1237, 1897
TaaI ACNGT 7 cut(s) 481, 652, 1276, 1851, 1913, 2256, 2361
TaiI ACGT 1 cut(s) 1036
TaqI TCGA 8 cut(s) 239, 539, 1284, 1589, 1781, 1829, 2141, 2261
TatI WGTACW 2 cut(s) 682, 2114
TfiI GAWTC 7 cut(s) 53, 190, 319, 1263, 1333, 1778, 1800
Tru1I TTAA 7 cut(s) 60, 285, 854, 1793, 2162, 2196, 2306
Tru9I TTAA 7 cut(s) 60, 285, 854, 1793, 2162, 2196, 2306
TscAI CASTG 6 cut(s) 135, 372, 588, 1420, 2035, 2261
TseFI GTSAC 4 cut(s) 1375, 2003, 2032, 2314
TseI GCWGC 8 cut(s) 273, 754, 757, 971, 1087, 1887, 1987, 2095
Tsp45I GTSAC 4 cut(s) 1375, 2003, 2032, 2314
TspGWI ACGGA 1 cut(s) 546
TspRI CASTG 6 cut(s) 135, 372, 588, 1420, 2035, 2261
Van91I CCANNNNNTGG 1 cut(s) 908
Vha464I CTTAAG 1 cut(s) 2195
VpaK11BI GGWCC 2 cut(s) 715, 799
XapI RAATTY 5 cut(s) 623, 827, 1789, 1815, 2086
XbaI TCTAGA 2 cut(s) 925, 1127
XceI RCATGY 2 cut(s) 1444, 2322
XcmI CCANNNNNNNNNTGG 1 cut(s) 1098
XhoI CTCGAG 1 cut(s) 2260
XmnI GAANNNNTTC 2 cut(s) 831, 1011
XspI CTAG 9 cut(s) 185, 803, 926, 1128, 1721, 1772, 1808, 2081, 2422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.