Rh3AG235900

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000039
Physical Location & Seq
Reverse (-)
24384612 .. 24387959
3348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG235900.1

Sequence Viewer

Length: 2442 bp
ATGGCAGTGGCATTGATAGGAGGAGCGGGTTTGTCAGTAACATTTTGGACGCTGTGTGATTCTGTTAAGCAAGTGAAGGAGCAGTTCAAACCCCAACTCGGGGATATCAAATCCACTCTGGACTCTTTGGAACCACTGATCAAAGAGATGGCAGAGTGTGAGAAGGAATTGGGTGGTCAAGGGGAGGAACTAGAGAATCTTAGAGTGGAAATGGGGGAAGGAGTGGAGCTTATTCGCAAGTGCTCGAAAGCGAGCAGGCTCAAGCAGTATAAGTATGGCAGCCGGCTTGTTAAATTGAGCAAGTCACTTCAAAGATTGTTGGGGATACTCAAAGTGCAGGGAATAAGGGATGTGAAGAAGGCATTGGTTTCAGTGAGGAACATTGAGAATGTCGTGCAGAGAATTGAAGGGAATTGTGTGATACAGAACAATCAGTCTGAAAAAATTCAAGGGTGGTGTGCTGTGCCTGAGCCTCCAACAATTACGGTTGGATTGGATGTGCCTTTGTGGGAATTGAAGAAGAAACTCTTTACTGACGGAGTTTCGATGGTGATAATTACTGCTCCTGGAGGATGTGGAAAAACTACACTGGCAACAAAGTTGTGCCAAGATGCAGAGGTCAAAGATAAATTCAAGAGCAACGTCTTCTTTGTTACTGTTTCCAAGAAGCCCAACTTATACCTAATTGTACAAGAGCTGTATCATGGAACGGGTGGCCAGGTCCCCGATTTCCAAAATGAAGCAACTGCAGTTAGCTGGCTGCAGCAATTTCTGAAGCAAACAGGACAAAATCCTATGTTGTTGGTCCTAGATGATGTCTGGGCAGGATCGGAATTCATTCTTGAGAAGTTTGATGAATTAAAGATGTCAGATTGCAAGATATTGGTAACATCATGGTCTGCTTTTCCAAGATTTGGTTCTCCATATTATCTAGAATGTTTGAACGATGAAGATGCAATGGCACTTTTTCACCATGCAGCATCCTTAGGAGATAGGAGCTCTTATATTTCAGAAGATCTTTCACGAAAGATAGTAGAACGTTGTATGAGATTTCCACTTGCAATTACAGTTGTTGGAAGATCACTATGCGGGCAGCCAATAGAGATTTGGCAAAAAAGAGTATTGGAATGGTCTAGAGGTTCTTCTGTTCTTGAGTCTGAACATGATTTGCTTGATTACCTCCAGAGTAGCTTAGATGCTTTGGATGGAGAGAAGTCTCTTATCAGGGAATGCTTCCTAGACCTTGGTTTATTTCCCGAAGATCAAAGAATCTCTGCTACTGTCCTCATCGATATGTGGGCAGAGTTATATGGCATAGAAGACATTTCGTCCATTGTGAATCTCTATGAACTCGCCTCTCGGAGTTTGGCTAATCTGGTAGACACAAGGAACGACAATAAGGATGGCGATGGCTATTACACTGAACACTTTGTTACACAGCTTGACATGCTTAGGGAGTTGGCTATCCAACAGATTAGTCGGGAACCACTACAACAGAGAATGAGACTTAAGATTGACATAAGTGGAGACAACTTTCCTATGTGGTGGAAAGAACAAAAGTATCAATACCTCATCACTCGCGTTGTATCTATCTCGACAGACGAAGAGTTTTCATCTAAATGGCAAAACTTGCAACTACCAGAAGCAGAGGTTTTGATTTTGAACTTTCAGACCAAGTATTATGCCTTACCTGAGTTTGTGGAGAAAATGAATAAACTGAAGACTCTAGCACTCACAAGTTCGGGTACCAGTCCTGCTGAGTTGAATAACTTTCAACTAGTTGATTCAAAACCAAATTTAAAGAGAATCAGATTAGAACGAATTTCATTTCCTTCGATAAGCAGGTATCCTATACAGTTGAAAAGTTTGAAAAAGATTTCTCTATTCATGTGTAGCATCGGCCAAGGTTTTGGTAACGGTTACATACATATATCAGAGGCGTTTCCAAATCTTGTTGAAATGAATATTGATTACTGCAATGATTTGGTGGAGCTGCCTGCCGATCTCTGTGACCTTATTCAATTGAAGAAACTCAGTGTCACCAATTCTCATAAGCTCTCCGTCTTACCTGAAGACATTGGAAATCTAGTAAATTTAGAGCTGCTGAGGCTTAGGTGTTGTACAGACTTGTCAGAGTTACCCGGCTCGATTAGGAACCTCAAGAACTTAAACTTGCTTGACATATCGAATTGCTTTAGCCTTAAGGAATTGCCTGAAGACATTGGAGAAATGTGCAGTTTAGAGAAGCTCAACATGAGACAGTGCTCGAGATTGAATGAGTTGCCTCCATCAGTTGTGGATCTTGAAAAGTTAATGGAAGTGACATGTGATGAAGAGACAGAAATCTTATGGGAGCCCTTCTTACCGTATCTCAGGAACATACACATAAAGGTTGTGAAAGAAGATATGAACCTGAATTGGCTCCACGAGTCTCATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

813

Amino Acids

92.46

Weight (kDa)

5.19

Isoelectric Point (pI)

41.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 5 - 128 2.6e-17 Arabidopsis broad-spectrum mildew resistance protein RPW8
NB-ARC PF00931 171 - 325 5.8e-15 NB-ARC domain
AAA_22 PF13401 182 - 281 4.8e-07 AAA domain
LRR_14 PF23598 648 - 731 1.4e-08 Leucine-rich repeat region
LRR_14 PF23598 733 - 782 6e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1833
Acc65I GGTACC 1 cut(s) 1745
AccB1I GGYRCC 1 cut(s) 1745
AccB7I CCANNNNNTGG 1 cut(s) 914
AccBSI CCGCTC 1 cut(s) 26
AccI GTMKAC 1 cut(s) 1380
AccII CGCG 1 cut(s) 1581
AciI CCGC 2 cut(s) 26, 1089
AclI AACGTT 1 cut(s) 1039
AclWI GGATC 2 cut(s) 835, 2307
AcoI YGGCCR 2 cut(s) 715, 1900
AcsI RAATTY 6 cut(s) 444, 629, 833, 1795, 1821, 2092
AcuI CTGAAG 4 cut(s) 794, 1739, 2091, 2235
AfaI GTAC 3 cut(s) 690, 1747, 2122
AfiI CCNNNNNNNGG 4 cut(s) 98, 99, 100, 914
AflII CTTAAG 2 cut(s) 1508, 2201
AflIII ACRYGT 1 cut(s) 2324
AhdI GACNNNNNGTC 1 cut(s) 1327
AhlI ACTAGT 1 cut(s) 1777
AjnI CCWGG 2 cut(s) 565, 717
AjuI GAANNNNNNNTTGG 4 cut(s) 347, 379, 901, 933
Alw21I GWGCWC 3 cut(s) 245, 1001, 2267
Alw26I GTCTC 6 cut(s) 1221, 1498, 1521, 2251, 2330, 2436
AlwI GGATC 2 cut(s) 835, 2307
Ama87I CYCGRG 2 cut(s) 98, 2266
AoxI GGCC 2 cut(s) 715, 1900
ApeKI GCWGC 7 cut(s) 279, 760, 763, 977, 1093, 1993, 2101
ApoI RAATTY 6 cut(s) 444, 629, 833, 1795, 1821, 2092
Asp700I GAANNNNTTC 2 cut(s) 444, 837
Asp718I GGTACC 1 cut(s) 1745
AspS9I GGNCC 2 cut(s) 721, 805
AsuC2I CCSGG 1 cut(s) 2142
AsuHPI GGTGA 3 cut(s) 562, 962, 2032
AvaI CYCGRG 2 cut(s) 98, 2266
AvaII GGWCC 2 cut(s) 721, 805
AxyI CCTNAGG 1 cut(s) 985
BaeI ACNNNNGTAYC 2 cut(s) 1544, 1577
BalI TGGCCA 1 cut(s) 717
BanI GGYRCC 1 cut(s) 1745
BanII GRGCYC 2 cut(s) 1001, 2358
BauI CACGAG 1 cut(s) 2426
BbsI GAAGAC 5 cut(s) 637, 1326, 1727, 2079, 2223
Bbv12I GWGCWC 3 cut(s) 245, 1001, 2267
BbvCI CCTCAGC 1 cut(s) 2105
BbvI GCAGC 7 cut(s) 291, 747, 775, 989, 1105, 1980, 2088
BccI CCATC 6 cut(s) 142, 541, 1199, 1397, 1403, 2296
BcgI CGANNNNNNTGC 2 cut(s) 935, 969
BciT130I CCWGG 2 cut(s) 567, 719
BciVI GTATCC 2 cut(s) 318, 1857
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 1 cut(s) 2142
BcoDI GTCTC 6 cut(s) 1221, 1498, 1521, 2251, 2330, 2436
BcuI ACTAGT 1 cut(s) 1777
BfaI CTAG 8 cut(s) 191, 809, 932, 1134, 1238, 1727, 1778, 2087
BfmI CTRYAG 2 cut(s) 747, 761
BfrI CTTAAG 2 cut(s) 1508, 2201
BfuAI ACCTGC 1 cut(s) 1833
BfuI GTATCC 2 cut(s) 318, 1857
BglII AGATCT 1 cut(s) 1015
BisI GCNGC 7 cut(s) 280, 761, 764, 978, 1094, 1994, 2102
BlsI GCNGC 7 cut(s) 281, 762, 765, 979, 1095, 1995, 2103
Bme1390I CCNGG 3 cut(s) 567, 719, 2142
Bme18I GGWCC 2 cut(s) 721, 805
BmeRI GACNNNNNGTC 1 cut(s) 1327
BmeT110I CYCGRG 2 cut(s) 98, 2266
BmgT120I GGNCC 2 cut(s) 721, 805
BmiI GGNNCC 7 cut(s) 132, 723, 1485, 1747, 2156, 2355, 2423
BmrFI CCNGG 3 cut(s) 567, 719, 2142
BmsI GCATC 5 cut(s) 601, 943, 989, 1186, 1905
BpiI GAAGAC 5 cut(s) 637, 1326, 1727, 2079, 2223
BpmI CTGGAG 2 cut(s) 588, 1166
Bpu10I CCTNAGC 4 cut(s) 468, 1451, 2105, 2111
BpuEI CTTGAG 4 cut(s) 245, 863, 1172, 2144
BpuMI CCSGG 1 cut(s) 2142
Bsa29I ATCGAT 1 cut(s) 1290
BsaJI CCNNGG 2 cut(s) 1243, 1903
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 99, 100, 914
Bse118I RCCGGY 1 cut(s) 282
Bse1I ACTGG 2 cut(s) 594, 1749
Bse21I CCTNAGG 1 cut(s) 985
Bse3DI GCAATG 2 cut(s) 963, 1984
BseBI CCWGG 2 cut(s) 567, 719
BseCI ATCGAT 1 cut(s) 1290
BseDI CCNNGG 2 cut(s) 1243, 1903
BseGI GGATG 6 cut(s) 355, 502, 578, 980, 1210, 1408
BseLI CCNNNNNNNGG 4 cut(s) 98, 99, 100, 914
BseMI GCAATG 2 cut(s) 963, 1984
BseMII CTCAG 6 cut(s) 459, 1683, 1749, 2047, 2096, 2386
BseNI ACTGG 2 cut(s) 594, 1749
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 7 cut(s) 291, 747, 775, 989, 1105, 1980, 2088
BsgI GTGCAG 3 cut(s) 356, 416, 2254
Bsh1236I CGCG 1 cut(s) 1581
BshFI GGCC 2 cut(s) 717, 1902
BshNI GGYRCC 1 cut(s) 1745
BshVI ATCGAT 1 cut(s) 1290
BsiHKAI GWGCWC 3 cut(s) 245, 1001, 2267
BsiHKCI CYCGRG 2 cut(s) 98, 2266
BsiSI CCGG 2 cut(s) 283, 2142
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 4 cut(s) 98, 99, 100, 914
BsmAI GTCTC 6 cut(s) 1221, 1498, 1521, 2251, 2330, 2436
BsmFI GGGAC 1 cut(s) 707
BsmI GAATGC 1 cut(s) 1235
BsnI GGCC 2 cut(s) 717, 1902
BsoBI CYCGRG 2 cut(s) 98, 2266
Bsp1286I GDGCHC 4 cut(s) 245, 1001, 2267, 2358
Bsp1407I TGTACA 2 cut(s) 688, 2120
Bsp143I GATC 7 cut(s) 138, 827, 1015, 1079, 1261, 2002, 2299
BspACI CCGC 2 cut(s) 26, 1089
BspANI GGCC 2 cut(s) 717, 1902
BspCNI CTCAG 6 cut(s) 460, 1684, 1750, 2046, 2097, 2385
BspDI ATCGAT 1 cut(s) 1290
BspFNI CGCG 1 cut(s) 1581
BspLI GGNNCC 7 cut(s) 132, 723, 1485, 1747, 2156, 2355, 2423
BspMAI CTGCAG 2 cut(s) 751, 765
BspMI ACCTGC 1 cut(s) 1833
BspPI GGATC 2 cut(s) 835, 2307
BspT107I GGYRCC 1 cut(s) 1745
BspTI CTTAAG 2 cut(s) 1508, 2201
BsrBI CCGCTC 1 cut(s) 26
BsrDI GCAATG 2 cut(s) 963, 1984
BsrFI RCCGGY 1 cut(s) 282
BsrGI TGTACA 2 cut(s) 688, 2120
BsrI ACTGG 2 cut(s) 594, 1749
BssAI RCCGGY 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 1243, 1903
BssMI GATC 7 cut(s) 138, 827, 1015, 1079, 1261, 2002, 2299
BssSI CACGAG 1 cut(s) 2426
BssT1I CCWWGG 2 cut(s) 1243, 1903
Bst2BI CACGAG 1 cut(s) 2426
Bst2UI CCWGG 2 cut(s) 567, 719
Bst4CI ACNGT 8 cut(s) 487, 658, 1069, 1282, 1857, 1919, 2262, 2367
Bst6I CTCTTC 2 cut(s) 1599, 2328
BstAFI CTTAAG 2 cut(s) 1508, 2201
BstAPI GCANNNNNTGC 1 cut(s) 1630
BstAUI TGTACA 2 cut(s) 688, 2120
BstC8I GCNNGC 6 cut(s) 253, 257, 284, 758, 1091, 1998
BstF5I GGATG 6 cut(s) 355, 502, 578, 980, 1210, 1408
BstFNI CGCG 1 cut(s) 1581
BstKTI GATC 7 cut(s) 141, 830, 1018, 1082, 1264, 2005, 2302
BstMAI GTCTC 6 cut(s) 1221, 1498, 1521, 2251, 2330, 2436
BstMBI GATC 7 cut(s) 138, 827, 1015, 1079, 1261, 2002, 2299
BstMWI GCNNNNNNNGC 3 cut(s) 1447, 1630, 2107
BstNI CCWGG 2 cut(s) 567, 719
BstNSI RCATGY 2 cut(s) 1450, 2328
BstSCI CCNGG 3 cut(s) 565, 717, 2140
BstSFI CTRYAG 2 cut(s) 747, 761
BstUI CGCG 1 cut(s) 1581
BstV1I GCAGC 7 cut(s) 291, 747, 775, 989, 1105, 1980, 2088
BstV2I GAAGAC 5 cut(s) 637, 1326, 1727, 2079, 2223
BstX2I RGATCY 2 cut(s) 1015, 2299
BstXI CCANNNNNNTGG 1 cut(s) 1910
BstYI RGATCY 2 cut(s) 1015, 2299
Bsu15I ATCGAT 1 cut(s) 1290
Bsu36I CCTNAGG 1 cut(s) 985
BsuI GTATCC 2 cut(s) 318, 1857
BsuRI GGCC 2 cut(s) 717, 1902
BsuTUI ATCGAT 1 cut(s) 1290
BtgZI GCGATG 1 cut(s) 1422
BtsCI GGATG 6 cut(s) 355, 502, 578, 980, 1210, 1408
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 7 cut(s) 12, 134, 378, 587, 1419, 2041, 2267
BveI ACCTGC 1 cut(s) 1833
Cac8I GCNNGC 6 cut(s) 253, 257, 284, 758, 1091, 1998
Cfr10I RCCGGY 1 cut(s) 282
Cfr13I GGNCC 2 cut(s) 721, 805
ClaI ATCGAT 1 cut(s) 1290
CseI GACGC 1 cut(s) 58
Csp6I GTAC 3 cut(s) 689, 1746, 2121
CviAII CATG 8 cut(s) 704, 894, 974, 1163, 1447, 1888, 2254, 2325
CviQI GTAC 3 cut(s) 689, 1746, 2121
DpnI GATC 7 cut(s) 140, 829, 1017, 1081, 1263, 2004, 2301
DpnII GATC 7 cut(s) 138, 827, 1015, 1079, 1261, 2002, 2299
DraI TTTAAA 1 cut(s) 1800
DriI GACNNNNNGTC 1 cut(s) 1327
EaeI YGGCCR 2 cut(s) 715, 1900
Eam1104I CTCTTC 2 cut(s) 1599, 2328
Eam1105I GACNNNNNGTC 1 cut(s) 1327
EarI CTCTTC 2 cut(s) 1599, 2328
Ecl136II GAGCTC 1 cut(s) 999
Eco130I CCWWGG 2 cut(s) 1243, 1903
Eco24I GRGCYC 2 cut(s) 1001, 2358
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 721, 805
Eco53kI GAGCTC 1 cut(s) 999
Eco57I CTGAAG 4 cut(s) 794, 1739, 2091, 2235
Eco81I CCTNAGG 1 cut(s) 985
Eco88I CYCGRG 2 cut(s) 98, 2266
EcoICRI GAGCTC 1 cut(s) 999
EcoO109I RGGNCCY 1 cut(s) 721
EcoRI GAATTC 1 cut(s) 833
EcoRII CCWGG 2 cut(s) 565, 717
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 2 cut(s) 1243, 1903
EcoT38I GRGCYC 2 cut(s) 1001, 2358
ErhI CCWWGG 2 cut(s) 1243, 1903
FaeI CATG 8 cut(s) 707, 897, 977, 1166, 1450, 1891, 2257, 2328
FalI AAGNNNNNCTT 4 cut(s) 512, 544, 659, 691
FaqI GGGAC 1 cut(s) 707
FatI CATG 8 cut(s) 703, 893, 973, 1162, 1446, 1887, 2253, 2324
FauI CCCGC 2 cut(s) 19, 1082
FbaI TGATCA 1 cut(s) 138
FblI GTMKAC 1 cut(s) 1380
Fnu4HI GCNGC 7 cut(s) 280, 761, 764, 978, 1094, 1994, 2102
FokI GGATG 6 cut(s) 362, 509, 585, 967, 1217, 1415
FriOI GRGCYC 2 cut(s) 1001, 2358
Fsp4HI GCNGC 7 cut(s) 280, 761, 764, 978, 1094, 1994, 2102
FspBI CTAG 8 cut(s) 191, 809, 932, 1134, 1238, 1727, 1778, 2087
GluI GCNGC 7 cut(s) 280, 761, 764, 978, 1094, 1994, 2102
GsuI CTGGAG 2 cut(s) 588, 1166
HaeIII GGCC 2 cut(s) 717, 1902
HapII CCGG 2 cut(s) 283, 2142
HgaI GACGC 1 cut(s) 58
Hin1II CATG 8 cut(s) 707, 897, 977, 1166, 1450, 1891, 2257, 2328
HpaII CCGG 2 cut(s) 283, 2142
HphI GGTGA 3 cut(s) 562, 962, 2032
Hpy166II GTNNAC 1 cut(s) 1381
Hpy8I GTNNAC 1 cut(s) 1381
HpyAV CCTTC 7 cut(s) 70, 157, 212, 352, 401, 1842, 2368
HpyCH4III ACNGT 8 cut(s) 487, 658, 1069, 1282, 1857, 1919, 2262, 2367
HpyCH4IV ACGT 2 cut(s) 642, 1039
HpyF10VI GCNNNNNNNGC 3 cut(s) 1447, 1630, 2107
HpySE526I ACGT 2 cut(s) 642, 1039
Hsp92II CATG 8 cut(s) 707, 897, 977, 1166, 1450, 1891, 2257, 2328
KpnI GGTACC 1 cut(s) 1749
KroI GCCGGC 1 cut(s) 282
KroNI GCCGGC 1 cut(s) 284
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 7 cut(s) 138, 827, 1015, 1079, 1261, 2002, 2299
LmnI GCTCC 8 cut(s) 23, 79, 226, 568, 996, 1990, 2353, 2427
Lsp1109I GCAGC 7 cut(s) 291, 747, 775, 989, 1105, 1980, 2088
LweI GCATC 5 cut(s) 601, 943, 989, 1186, 1905
MaeI CTAG 8 cut(s) 191, 809, 932, 1134, 1238, 1727, 1778, 2087
MaeII ACGT 2 cut(s) 642, 1039
MalI GATC 7 cut(s) 140, 829, 1017, 1081, 1263, 2004, 2301
MbiI CCGCTC 1 cut(s) 26
MboI GATC 7 cut(s) 138, 827, 1015, 1079, 1261, 2002, 2299
MfeI CAATTG 1 cut(s) 2021
MflI RGATCY 2 cut(s) 1015, 2299
MhlI GDGCHC 4 cut(s) 245, 1001, 2267, 2358
MlsI TGGCCA 1 cut(s) 717
MluNI TGGCCA 1 cut(s) 717
MlyI GAGTC 4 cut(s) 116, 1163, 1717, 2438
MmeI TCCRAC 4 cut(s) 469, 500, 1054, 1492
Mox20I TGGCCA 1 cut(s) 717
MroNI GCCGGC 1 cut(s) 282
MroXI GAANNNNTTC 2 cut(s) 444, 837
MscI TGGCCA 1 cut(s) 717
MseI TTAA 8 cut(s) 66, 291, 860, 1509, 1799, 2168, 2202, 2312
MslI CAYNNNNRTG 2 cut(s) 1292, 1618
Msp20I TGGCCA 1 cut(s) 717
MspCI CTTAAG 2 cut(s) 1508, 2201
MspI CCGG 2 cut(s) 283, 2142
MspR9I CCNGG 3 cut(s) 567, 719, 2142
MunI CAATTG 1 cut(s) 2021
Mva1269I GAATGC 1 cut(s) 1235
MvaI CCWGG 2 cut(s) 567, 719
MvnI CGCG 1 cut(s) 1581
MwoI GCNNNNNNNGC 3 cut(s) 1447, 1630, 2107
NaeI GCCGGC 1 cut(s) 284
NciI CCSGG 1 cut(s) 2142
NdeII GATC 7 cut(s) 138, 827, 1015, 1079, 1261, 2002, 2299
NgoMIV GCCGGC 1 cut(s) 282
NlaIII CATG 8 cut(s) 707, 897, 977, 1166, 1450, 1891, 2257, 2328
NlaIV GGNNCC 7 cut(s) 132, 723, 1485, 1747, 2156, 2355, 2423
NmuCI GTSAC 4 cut(s) 303, 2009, 2038, 2320
NspI RCATGY 2 cut(s) 1450, 2328
PaeR7I CTCGAG 1 cut(s) 2266
PciI ACATGT 1 cut(s) 2324
PctI GAATGC 1 cut(s) 1235
PdiI GCCGGC 1 cut(s) 284
PdmI GAANNNNTTC 2 cut(s) 444, 837
PfeI GAWTC 6 cut(s) 59, 196, 1269, 1339, 1784, 1806
PflMI CCANNNNNTGG 1 cut(s) 914
PfoI TCCNGGA 1 cut(s) 565
PkrI GCNGC 7 cut(s) 281, 762, 765, 979, 1095, 1995, 2103
PleI GAGTC 4 cut(s) 116, 1162, 1717, 2437
PpsI GAGTC 4 cut(s) 116, 1162, 1717, 2437
PpuMI RGGWCCY 1 cut(s) 721
PscI ACATGT 1 cut(s) 2324
Psp124BI GAGCTC 1 cut(s) 1001
Psp1406I AACGTT 1 cut(s) 1039
Psp5II RGGWCCY 1 cut(s) 721
Psp6I CCWGG 2 cut(s) 565, 717
PspGI CCWGG 2 cut(s) 565, 717
PspN4I GGNNCC 7 cut(s) 132, 723, 1485, 1747, 2156, 2355, 2423
PspPI GGNCC 2 cut(s) 721, 805
PspPPI RGGWCCY 1 cut(s) 721
PstI CTGCAG 2 cut(s) 751, 765
PsuI RGATCY 2 cut(s) 1015, 2299
RsaI GTAC 3 cut(s) 690, 1747, 2122
RsaNI GTAC 3 cut(s) 689, 1746, 2121
RseI CAYNNNNRTG 2 cut(s) 1292, 1618
SacI GAGCTC 1 cut(s) 1001
SaqAI TTAA 8 cut(s) 66, 291, 860, 1509, 1799, 2168, 2202, 2312
SatI GCNGC 7 cut(s) 280, 761, 764, 978, 1094, 1994, 2102
Sau3AI GATC 7 cut(s) 138, 827, 1015, 1079, 1261, 2002, 2299
Sau96I GGNCC 2 cut(s) 721, 805
SchI GAGTC 4 cut(s) 116, 1163, 1717, 2438
ScrFI CCNGG 3 cut(s) 567, 719, 2142
SduI GDGCHC 4 cut(s) 245, 1001, 2267, 2358
SfaNI GCATC 5 cut(s) 601, 943, 989, 1186, 1905
SfcI CTRYAG 2 cut(s) 747, 761
Sfr274I CTCGAG 1 cut(s) 2266
SinI GGWCC 2 cut(s) 721, 805
SlaI CTCGAG 1 cut(s) 2266
SmiMI CAYNNNNRTG 2 cut(s) 1292, 1618
SmlI CTYRAG 7 cut(s) 260, 842, 1151, 1508, 2159, 2201, 2266
SmoI CTYRAG 7 cut(s) 260, 842, 1151, 1508, 2159, 2201, 2266
SpeI ACTAGT 1 cut(s) 1777
SsiI CCGC 2 cut(s) 26, 1089
SspI AATATT 1 cut(s) 1966
SspMI CTAG 8 cut(s) 191, 809, 932, 1134, 1238, 1727, 1778, 2087
SstI GAGCTC 1 cut(s) 1001
StyD4I CCNGG 3 cut(s) 565, 717, 2140
StyI CCWWGG 2 cut(s) 1243, 1903
TaaI ACNGT 8 cut(s) 487, 658, 1069, 1282, 1857, 1919, 2262, 2367
TaiI ACGT 2 cut(s) 645, 1042
TaqI TCGA 8 cut(s) 245, 545, 1290, 1595, 1835, 2147, 2186, 2267
TatI WGTACW 2 cut(s) 688, 2120
TfiI GAWTC 6 cut(s) 59, 196, 1269, 1339, 1784, 1806
Tru1I TTAA 8 cut(s) 66, 291, 860, 1509, 1799, 2168, 2202, 2312
Tru9I TTAA 8 cut(s) 66, 291, 860, 1509, 1799, 2168, 2202, 2312
TscAI CASTG 7 cut(s) 12, 141, 378, 594, 1426, 2041, 2267
TseFI GTSAC 4 cut(s) 303, 2009, 2038, 2320
TseI GCWGC 7 cut(s) 279, 760, 763, 977, 1093, 1993, 2101
Tsp45I GTSAC 4 cut(s) 303, 2009, 2038, 2320
TspGWI ACGGA 2 cut(s) 552, 2050
TspRI CASTG 7 cut(s) 12, 141, 378, 594, 1426, 2041, 2267
Van91I CCANNNNNTGG 1 cut(s) 914
Vha464I CTTAAG 2 cut(s) 1508, 2201
VpaK11BI GGWCC 2 cut(s) 721, 805
XapI RAATTY 6 cut(s) 444, 629, 833, 1795, 1821, 2092
XbaI TCTAGA 2 cut(s) 931, 1133
XceI RCATGY 2 cut(s) 1450, 2328
XcmI CCANNNNNNNNNTGG 1 cut(s) 1104
XhoI CTCGAG 1 cut(s) 2266
XmiI GTMKAC 1 cut(s) 1380
XmnI GAANNNNTTC 2 cut(s) 444, 837
XspI CTAG 8 cut(s) 191, 809, 932, 1134, 1238, 1727, 1778, 2087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.