Rh1CG075000

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000039
Physical Location & Seq
Forward (+)
15642009 .. 15646159
4151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG075000.1

Sequence Viewer

Length: 1803 bp
ATGTGGACAGGTACATTCAAGGACAATATCTTCTTTGTCCATGTTTCGAAAGAGCTCAGCTGTGGAGATATTGTAAGAAGGATTGTAAGAAAACTAAATAAGTACAAGAAAACTGAGTTACCTGACAACATAGATGACAAAGTAATTGCAGTTGAGTGGCTGCAACAATTTCTGAATAAAGCAGGACAAAATCCTATACTGTTAGTCTTGGATGATGTTTGGCCTGGATCGGAATTCCTTCTTAAGAAGTTCAATGAATGCAAAATGTCGAATTGCAAGATTTTGGTGACATCAATTTACAATTTTCCAGGATTTTCTAGCCGATATTATTTTGAACCATTGGATGAATACAATGCAATCATTCTTCTTCAACATTCAGCATCCAGATATAAGCCCGCTTGTTTTACAGATGATTTTGCTAGAAAGGTAGTTGAGCGCTGCAGGGGGTTTCCACTCGCCATTGAGGAGGTCGGAAGATCACTAGGTGATCGAGCAACAGAATCCTGGGATAAAAGTCTAAGCAATTGGTACGAAAATTCGTCTATTATTGACTCAGAGACTGATTTCTTTGGCTTTCTCCAAAGCAGCAAAGATACCTTGAATGAACAGATGGATACAGTAAAGGAATGTTTCATGGACCTTGGTTCATTTCCTGAAAATCAAAGAATACCTGTTGCTGCCCTCATTGAAATTTGGGCGGTGTTATATAAGCTAGAGGACGCTCCATCCATTTCAAACCTCTACGAGCTCACTAACCAGAGTTTGGCTAATCATATCTTCACAATGAAGGAGAAGATAGATGTGAATGGCTACTACAGTGAACACTTTGTTACCCAGCACTACCTGCTTAGACAGCTGGCCATATATGAAACGGGACAGGACCCAGTAGAACATAGAAAAAGGATGATTATAGATATCTGTGGAAACAATCTTCCCAAGTGGCTGAAGGAACATAAAGATCAACCAGTCAAGGCTCGCCTACTATCTATATCAACTGATAACAACTTCACAGAGAACTGGCACAACATGCAACTACCAGAGGTTGAAGTTCTAATTTTGAATTTTCATACAAAGGCCTATGCTTTACCTGGATTCGTGAAGACAATGGATAAATTGAAGGTTCTGATAGTCACAAATTATGGTTCCGAACCTGCTGAATTAAGACAGTTTCATTTACTGGATAAGTTGTCAGATCTGAAGACAATCAGATTACAGAACATTTCAATAGCTTCCATCAGTAAGAACAGCCTTGCATTGAAGAGTCTACAGAAGATATCTTTATCCCGGTGCAGTATAGCTAAAGCTTTCAGTGCCCGTCGCATACAGATTTCAGATGCATTTCCAAATTTAGTGGAAATGAATATTGATTGTTGCAATGATTTGGAGAAATCGCTTGATAAGTTCTGTAGTCTTACTAGCCTAAAGAAACTCAGTATTACCAACTGTGATCTATCTATGTTATCGGAAGAGATTGGAGAGTTGGAAGATTTAGAATTGCTGAGGCTAAGGTCTTGTAGAGACTTGCACAAGTTGCCAGACTCAATTAGGAAACTCAAAATGCTAGACATGCTTGACATATCTGATTGCTTGAGCCTAAGGACGTTGCCTGAAGACATTGGTGAAATGAAAAGTTTGAGAAAGCTCGACGTGAGACAGTGCAACGGACTGGAAAAGCTTCCTCAGTCAATTTTGAATCTTAAGCAGTTAGAGGAAGTGCTATGTGATGAAGTGACAGAAAATTTATGGGAGCCCTTCTTAGCCAAACTCAGCATAAAGGTGACCAAAGAAGATATTTCAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

600

Amino Acids

69.17

Weight (kDa)

5.74

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 4 - 98 1.6e-06 NB-ARC domain
LRR_14 PF23598 447 - 529 1.2e-08 Leucine-rich repeat region
LRR_14 PF23598 532 - 578 3.6e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 852, 1159
AccB7I CCANNNNNTGG 1 cut(s) 763
AccI GTMKAC 1 cut(s) 1264
AciI CCGC 2 cut(s) 396, 698
AclWI GGATC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 858
AcsI RAATTY 6 cut(s) 233, 535, 690, 1060, 1345, 1738
AcuI CTGAAG 3 cut(s) 965, 1217, 1629
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 3 cut(s) 13, 104, 530
AfeI AGCGCT 1 cut(s) 437
AfiI CCNNNNNNNGG 1 cut(s) 763
AflII CTTAAG 2 cut(s) 242, 1697
AjiI CACGTC 1 cut(s) 1648
AjnI CCWGG 4 cut(s) 223, 307, 503, 1087
Alw21I GWGCWC 2 cut(s) 57, 750
Alw26I GTCTC 3 cut(s) 551, 1512, 1645
AlwI GGATC 1 cut(s) 235
AlwNI CAGNNNCTG 1 cut(s) 560
Aor51HI AGCGCT 1 cut(s) 437
AoxI GGCC 3 cut(s) 221, 858, 1074
ApeKI GCWGC 4 cut(s) 160, 438, 585, 677
ApoI RAATTY 6 cut(s) 233, 535, 690, 1060, 1345, 1738
Asp700I GAANNNNTTC 2 cut(s) 237, 1674
AspLEI GCGC 1 cut(s) 438
AspS9I GGNCC 2 cut(s) 637, 880
AsuC2I CCSGG 1 cut(s) 1285
AsuHPI GGTGA 4 cut(s) 298, 497, 1631, 1789
AsuII TTCGAA 1 cut(s) 47
AvaII GGWCC 2 cut(s) 637, 880
AxyI CCTNAGG 1 cut(s) 1595
BaeGI GKGCMC 1 cut(s) 1315
BalI TGGCCA 1 cut(s) 860
BanII GRGCYC 3 cut(s) 57, 750, 1752
BbsI GAAGAC 3 cut(s) 1106, 1205, 1617
Bbv12I GWGCWC 2 cut(s) 57, 750
BbvCI CCTCAGC 1 cut(s) 1499
BbvI GCAGC 4 cut(s) 147, 425, 597, 664
BccI CCATC 3 cut(s) 604, 733, 1241
BciT130I CCWGG 4 cut(s) 225, 309, 505, 1089
BciVI GTATCC 1 cut(s) 607
BcnI CCSGG 1 cut(s) 1285
BcoDI GTCTC 3 cut(s) 551, 1512, 1645
BfaI CTAG 6 cut(s) 318, 420, 482, 713, 1416, 1562
BfmI CTRYAG 4 cut(s) 439, 814, 1265, 1405
BfoI RGCGCY 1 cut(s) 439
BfrI CTTAAG 2 cut(s) 242, 1697
BfuAI ACCTGC 2 cut(s) 852, 1159
BfuI GTATCC 1 cut(s) 607
BglII AGATCT 1 cut(s) 1192
BisI GCNGC 4 cut(s) 161, 439, 586, 678
BlpI GCTNAGC 1 cut(s) 56
BlsI GCNGC 4 cut(s) 162, 440, 587, 679
Bme1390I CCNGG 5 cut(s) 225, 309, 505, 1089, 1285
Bme18I GGWCC 2 cut(s) 637, 880
BmgBI CACGTC 1 cut(s) 1648
BmgT120I GGNCC 2 cut(s) 637, 880
BmiI GGNNCC 3 cut(s) 882, 1144, 1749
BmrFI CCNGG 5 cut(s) 225, 309, 505, 1089, 1285
BmrI ACTGGG 1 cut(s) 878
BmsI GCATC 2 cut(s) 389, 1324
BmuI ACTGGG 1 cut(s) 878
BpiI GAAGAC 3 cut(s) 1106, 1205, 1617
Bpu10I CCTNAGC 2 cut(s) 1499, 1505
Bpu1102I GCTNAGC 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 47
BpuEI CTTGAG 1 cut(s) 1609
BpuMI CCSGG 1 cut(s) 1285
BsaJI CCNNGG 2 cut(s) 504, 640
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 763
Bse1I ACTGG 5 cut(s) 884, 965, 1022, 1182, 1671
Bse21I CCTNAGG 1 cut(s) 1595
Bse3DI GCAATG 1 cut(s) 1381
BseBI CCWGG 4 cut(s) 225, 309, 505, 1089
BseDI CCNNGG 2 cut(s) 504, 640
BseGI GGATG 5 cut(s) 217, 349, 380, 725, 909
BseLI CCNNNNNNNGG 1 cut(s) 763
BseMI GCAATG 1 cut(s) 1381
BseMII CTCAG 7 cut(s) 70, 105, 567, 1444, 1490, 1694, 1780
BseNI ACTGG 5 cut(s) 884, 965, 1022, 1182, 1671
BseRI GAGGAG 1 cut(s) 479
BseSI GKGCMC 1 cut(s) 1315
BseXI GCAGC 4 cut(s) 147, 425, 597, 664
BseYI CCCAGC 1 cut(s) 834
BsgI GTGCAG 1 cut(s) 1309
BshFI GGCC 3 cut(s) 223, 860, 1076
BsiHKAI GWGCWC 2 cut(s) 57, 750
BsiSI CCGG 1 cut(s) 1285
BslFI GGGAC 1 cut(s) 888
BslI CCNNNNNNNGG 1 cut(s) 763
BsmAI GTCTC 3 cut(s) 551, 1512, 1645
BsmFI GGGAC 1 cut(s) 888
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 3 cut(s) 223, 860, 1076
Bsp119I TTCGAA 1 cut(s) 47
Bsp1286I GDGCHC 4 cut(s) 57, 750, 1315, 1752
Bsp143I GATC 6 cut(s) 227, 476, 487, 958, 1192, 1447
Bsp1720I GCTNAGC 1 cut(s) 56
BspACI CCGC 2 cut(s) 396, 698
BspANI GGCC 3 cut(s) 223, 860, 1076
BspCNI CTCAG 7 cut(s) 69, 106, 566, 1443, 1491, 1693, 1779
BspLI GGNNCC 3 cut(s) 882, 1144, 1749
BspMAI CTGCAG 1 cut(s) 443
BspMI ACCTGC 2 cut(s) 852, 1159
BspPI GGATC 1 cut(s) 235
BspT104I TTCGAA 1 cut(s) 47
BspTI CTTAAG 2 cut(s) 242, 1697
BsrDI GCAATG 1 cut(s) 1381
BsrI ACTGG 5 cut(s) 884, 965, 1022, 1182, 1671
BssECI CCNNGG 2 cut(s) 504, 640
BssMI GATC 6 cut(s) 227, 476, 487, 958, 1192, 1447
BssT1I CCWWGG 1 cut(s) 640
Bst2UI CCWGG 4 cut(s) 225, 309, 505, 1089
Bst4CI ACNGT 6 cut(s) 201, 619, 818, 1167, 1445, 1656
Bst6I CTCTTC 2 cut(s) 1253, 1461
BstAFI CTTAAG 2 cut(s) 242, 1697
BstAPI GCANNNNNTGC 3 cut(s) 844, 1027, 1531
BstBI TTCGAA 1 cut(s) 47
BstC8I GCNNGC 3 cut(s) 396, 858, 976
BstEII GGTNACC 1 cut(s) 1777
BstF5I GGATG 5 cut(s) 217, 349, 380, 725, 909
BstH2I RGCGCY 1 cut(s) 439
BstHHI GCGC 1 cut(s) 438
BstKTI GATC 6 cut(s) 230, 479, 490, 961, 1195, 1450
BstMAI GTCTC 3 cut(s) 551, 1512, 1645
BstMBI GATC 6 cut(s) 227, 476, 487, 958, 1192, 1447
BstMWI GCNNNNNNNGC 6 cut(s) 844, 853, 1027, 1310, 1531, 1567
BstNI CCWGG 4 cut(s) 225, 309, 505, 1089
BstNSI RCATGY 2 cut(s) 1030, 1570
BstPI GGTNACC 1 cut(s) 1777
BstSCI CCNGG 5 cut(s) 223, 307, 503, 1087, 1283
BstSFI CTRYAG 4 cut(s) 439, 814, 1265, 1405
BstSLI GKGCMC 1 cut(s) 1315
BstV1I GCAGC 4 cut(s) 147, 425, 597, 664
BstV2I GAAGAC 3 cut(s) 1106, 1205, 1617
BstX2I RGATCY 1 cut(s) 1192
BstYI RGATCY 1 cut(s) 1192
Bsu36I CCTNAGG 1 cut(s) 1595
BsuI GTATCC 1 cut(s) 607
BsuRI GGCC 3 cut(s) 223, 860, 1076
BtrI CACGTC 1 cut(s) 1648
BtsCI GGATG 5 cut(s) 217, 349, 380, 725, 909
BtsIMutI CAGTG 3 cut(s) 823, 1315, 1661
BveI ACCTGC 2 cut(s) 852, 1159
Cac8I GCNNGC 3 cut(s) 396, 858, 976
CaiI CAGNNNCTG 1 cut(s) 560
CfoI GCGC 1 cut(s) 438
Cfr13I GGNCC 2 cut(s) 637, 880
CseI GACGC 1 cut(s) 728
Csp6I GTAC 3 cut(s) 12, 103, 529
CspCI CAANNNNNGTGG 2 cut(s) 1332, 1367
CviAII CATG 4 cut(s) 41, 634, 1027, 1567
CviQI GTAC 3 cut(s) 12, 103, 529
DpnI GATC 6 cut(s) 229, 478, 489, 960, 1194, 1449
DpnII GATC 6 cut(s) 227, 476, 487, 958, 1192, 1447
DraIII CACNNNGTG 1 cut(s) 485
EaeI YGGCCR 1 cut(s) 858
Eam1104I CTCTTC 2 cut(s) 1253, 1461
EarI CTCTTC 2 cut(s) 1253, 1461
Ecl136II GAGCTC 2 cut(s) 55, 748
Eco130I CCWWGG 1 cut(s) 640
Eco147I AGGCCT 1 cut(s) 1076
Eco24I GRGCYC 3 cut(s) 57, 750, 1752
Eco32I GATATC 2 cut(s) 916, 1275
Eco47I GGWCC 2 cut(s) 637, 880
Eco47III AGCGCT 1 cut(s) 437
Eco53kI GAGCTC 2 cut(s) 55, 748
Eco57I CTGAAG 3 cut(s) 965, 1217, 1629
Eco81I CCTNAGG 1 cut(s) 1595
Eco91I GGTNACC 1 cut(s) 1777
EcoICRI GAGCTC 2 cut(s) 55, 748
EcoO109I RGGNCCY 1 cut(s) 880
EcoO65I GGTNACC 1 cut(s) 1777
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 4 cut(s) 223, 307, 503, 1087
EcoRV GATATC 2 cut(s) 916, 1275
EcoT14I CCWWGG 1 cut(s) 640
EcoT22I ATGCAT 1 cut(s) 1339
EcoT38I GRGCYC 3 cut(s) 57, 750, 1752
ErhI CCWWGG 1 cut(s) 640
FaeI CATG 4 cut(s) 44, 637, 1030, 1570
FaqI GGGAC 1 cut(s) 888
FatI CATG 4 cut(s) 40, 633, 1026, 1566
FauI CCCGC 1 cut(s) 403
FblI GTMKAC 1 cut(s) 1264
Fnu4HI GCNGC 4 cut(s) 161, 439, 586, 678
FokI GGATG 5 cut(s) 224, 356, 367, 712, 916
FriOI GRGCYC 3 cut(s) 57, 750, 1752
Fsp4HI GCNGC 4 cut(s) 161, 439, 586, 678
FspBI CTAG 6 cut(s) 318, 420, 482, 713, 1416, 1562
GlaI GCGC 1 cut(s) 437
GluI GCNGC 4 cut(s) 161, 439, 586, 678
GsaI CCCAGC 1 cut(s) 838
HaeII RGCGCY 1 cut(s) 439
HaeIII GGCC 3 cut(s) 223, 860, 1076
HapII CCGG 1 cut(s) 1285
HgaI GACGC 1 cut(s) 728
HhaI GCGC 1 cut(s) 438
Hin1II CATG 4 cut(s) 44, 637, 1030, 1570
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HindIII AAGCTT 2 cut(s) 1302, 1673
HinfI GANTC 6 cut(s) 500, 551, 1092, 1261, 1538, 1693
HpaII CCGG 1 cut(s) 1285
HphI GGTGA 4 cut(s) 298, 497, 1631, 1789
Hpy166II GTNNAC 3 cut(s) 6, 821, 1265
Hpy188III TCNNGA 3 cut(s) 384, 653, 1096
Hpy8I GTNNAC 3 cut(s) 6, 821, 1265
Hpy99I CGWCG 2 cut(s) 1320, 1649
HpyAV CCTTC 6 cut(s) 72, 248, 781, 940, 1111, 1762
HpyCH4III ACNGT 6 cut(s) 201, 619, 818, 1167, 1445, 1656
HpyCH4IV ACGT 2 cut(s) 1601, 1647
HpyF10VI GCNNNNNNNGC 6 cut(s) 844, 853, 1027, 1310, 1531, 1567
HpySE526I ACGT 2 cut(s) 1601, 1647
Hsp92II CATG 4 cut(s) 44, 637, 1030, 1570
HspAI GCGC 1 cut(s) 436
Kzo9I GATC 6 cut(s) 227, 476, 487, 958, 1192, 1447
LmnI GCTCC 2 cut(s) 727, 1747
Lsp1109I GCAGC 4 cut(s) 147, 425, 597, 664
LweI GCATC 2 cut(s) 389, 1324
MaeI CTAG 6 cut(s) 318, 420, 482, 713, 1416, 1562
MaeII ACGT 2 cut(s) 1601, 1647
MaeIII GTNAC 6 cut(s) 117, 286, 829, 1129, 1729, 1777
MalI GATC 6 cut(s) 229, 478, 489, 960, 1194, 1449
MboI GATC 6 cut(s) 227, 476, 487, 958, 1192, 1447
MfeI CAATTG 1 cut(s) 523
MflI RGATCY 1 cut(s) 1192
MhlI GDGCHC 4 cut(s) 57, 750, 1315, 1752
MlsI TGGCCA 1 cut(s) 860
MluNI TGGCCA 1 cut(s) 860
MlyI GAGTC 3 cut(s) 545, 1270, 1532
MmeI TCCRAC 2 cut(s) 451, 1461
MnlI CCTC 9 cut(s) 457, 460, 692, 709, 749, 1033, 1494, 1689, 1702
Mox20I TGGCCA 1 cut(s) 860
Mph1103I ATGCAT 1 cut(s) 1339
MroXI GAANNNNTTC 2 cut(s) 237, 1674
MscI TGGCCA 1 cut(s) 860
MseI TTAA 3 cut(s) 243, 1160, 1698
MslI CAYNNNNRTG 1 cut(s) 1775
Msp20I TGGCCA 1 cut(s) 860
MspA1I CMGCKG 2 cut(s) 60, 856
MspCI CTTAAG 2 cut(s) 242, 1697
MspI CCGG 1 cut(s) 1285
MspR9I CCNGG 5 cut(s) 225, 309, 505, 1089, 1285
MunI CAATTG 1 cut(s) 523
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 4 cut(s) 225, 309, 505, 1089
MwoI GCNNNNNNNGC 6 cut(s) 844, 853, 1027, 1310, 1531, 1567
NciI CCSGG 1 cut(s) 1285
NdeII GATC 6 cut(s) 227, 476, 487, 958, 1192, 1447
NlaIII CATG 4 cut(s) 44, 637, 1030, 1570
NlaIV GGNNCC 3 cut(s) 882, 1144, 1749
NmuCI GTSAC 4 cut(s) 286, 1129, 1729, 1777
NsiI ATGCAT 1 cut(s) 1339
NspI RCATGY 2 cut(s) 1030, 1570
NspV TTCGAA 1 cut(s) 47
PceI AGGCCT 1 cut(s) 1076
PctI GAATGC 1 cut(s) 263
PdmI GAANNNNTTC 2 cut(s) 237, 1674
PfeI GAWTC 3 cut(s) 500, 1092, 1693
PflMI CCANNNNNTGG 1 cut(s) 763
PfoI TCCNGGA 1 cut(s) 307
PkrI GCNGC 4 cut(s) 162, 440, 587, 679
PleI GAGTC 3 cut(s) 545, 1269, 1532
PpsI GAGTC 3 cut(s) 545, 1269, 1532
PpuMI RGGWCCY 1 cut(s) 880
Psp124BI GAGCTC 2 cut(s) 57, 750
Psp5II RGGWCCY 1 cut(s) 880
Psp6I CCWGG 4 cut(s) 223, 307, 503, 1087
PspEI GGTNACC 1 cut(s) 1777
PspFI CCCAGC 1 cut(s) 834
PspGI CCWGG 4 cut(s) 223, 307, 503, 1087
PspN4I GGNNCC 3 cut(s) 882, 1144, 1749
PspPI GGNCC 2 cut(s) 637, 880
PspPPI RGGWCCY 1 cut(s) 880
PstI CTGCAG 1 cut(s) 443
PstNI CAGNNNCTG 1 cut(s) 560
PsuI RGATCY 1 cut(s) 1192
PvuII CAGCTG 2 cut(s) 60, 856
RsaI GTAC 3 cut(s) 13, 104, 530
RsaNI GTAC 3 cut(s) 12, 103, 529
RseI CAYNNNNRTG 1 cut(s) 1775
SacI GAGCTC 2 cut(s) 57, 750
SaqAI TTAA 3 cut(s) 243, 1160, 1698
SatI GCNGC 4 cut(s) 161, 439, 586, 678
Sau3AI GATC 6 cut(s) 227, 476, 487, 958, 1192, 1447
Sau96I GGNCC 2 cut(s) 637, 880
SchI GAGTC 3 cut(s) 545, 1270, 1532
ScrFI CCNGG 5 cut(s) 225, 309, 505, 1089, 1285
SduI GDGCHC 4 cut(s) 57, 750, 1315, 1752
SfaNI GCATC 2 cut(s) 389, 1324
SfcI CTRYAG 4 cut(s) 439, 814, 1265, 1405
SfuI TTCGAA 1 cut(s) 47
SinI GGWCC 2 cut(s) 637, 880
SmiMI CAYNNNNRTG 1 cut(s) 1775
SmlI CTYRAG 3 cut(s) 242, 1588, 1697
SmoI CTYRAG 3 cut(s) 242, 1588, 1697
SseBI AGGCCT 1 cut(s) 1076
SsiI CCGC 2 cut(s) 396, 698
SspI AATATT 1 cut(s) 1363
SspMI CTAG 6 cut(s) 318, 420, 482, 713, 1416, 1562
SstI GAGCTC 2 cut(s) 57, 750
StuI AGGCCT 1 cut(s) 1076
StyD4I CCNGG 5 cut(s) 223, 307, 503, 1087, 1283
StyI CCWWGG 1 cut(s) 640
TaaI ACNGT 6 cut(s) 201, 619, 818, 1167, 1445, 1656
TaiI ACGT 2 cut(s) 1604, 1650
TaqI TCGA 4 cut(s) 47, 269, 490, 1644
TatI WGTACW 1 cut(s) 102
TfiI GAWTC 3 cut(s) 500, 1092, 1693
Tru1I TTAA 3 cut(s) 243, 1160, 1698
Tru9I TTAA 3 cut(s) 243, 1160, 1698
TscAI CASTG 3 cut(s) 823, 1315, 1661
TseFI GTSAC 4 cut(s) 286, 1129, 1729, 1777
TseI GCWGC 4 cut(s) 160, 438, 585, 677
Tsp45I GTSAC 4 cut(s) 286, 1129, 1729, 1777
TspGWI ACGGA 1 cut(s) 1677
TspRI CASTG 3 cut(s) 823, 1315, 1661
Van91I CCANNNNNTGG 1 cut(s) 763
Vha464I CTTAAG 2 cut(s) 242, 1697
VpaK11BI GGWCC 2 cut(s) 637, 880
XapI RAATTY 6 cut(s) 233, 535, 690, 1060, 1345, 1738
XceI RCATGY 2 cut(s) 1030, 1570
XmiI GTMKAC 1 cut(s) 1264
XmnI GAANNNNTTC 2 cut(s) 237, 1674
XspI CTAG 6 cut(s) 318, 420, 482, 713, 1416, 1562
Zsp2I ATGCAT 1 cut(s) 1339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.