RchiOBHm_Chr2g0104331

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000039
Physical Location & Seq
Forward (+)
15722431 .. 15725326
2896 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47860

Sequence Viewer

Length: 1779 bp
ATGGCCAATCCAGTGGATGTTTTCGCCGGGGCTGGTGGAGGATTACTATTCAATGTGCTCTATGATGGCCTCAAGGAGCTGACCACCAAGTATGTGCTGTTCAAACACGACCTCAAAAGCGTCAAATCCACACTCGAATCTCTGGAGCAAGTGGTTCAAGAGATAGCACGACTTAACGAGGATCTGGATCGCCTGGAGGAAGAACTAGCGAGCCTAAAAACCCAACTAGAGGAGGGCAAAGTGCTCGTTGCCAAGTGCGGCAAGGTTCGTGTGTGGAGCGTGTACAAGAAGTACAAATACTCCAAGAAACTTCTTGGATGGAATGACAGTCTTAAAGAACAGTTGGAGATGCTCAAAGTTCATGCAATAAGAGATGGGAAGGAGACCTTGACAACGGTGAAGAGAACAGAGAAGACTGTGAGTCAAATCAAATCGACCAGTTTCAGTATAAAGGAGGGAGTGGAGCAAATTGAGACCAACACTGCAAATCTACAGGTGGTGGTGAGCCGAGTGGAAGCGAGTGTTTCGAATATAGAGGCTGGGATAAAGCAGATGCAACAAATTGAAGCTTGGTGTGCGGTACCTGAACTTCCAACTCTTACAGTTGGATTGGATGGGCCTTTGAACGAACTGAAGATGAAGTTGTTCAACAATGGAGTGTCAATGGTTGTGCTGACCGCTCCCGGAGGATGTGGAAAAACCACTTTGGCAACAAAGTTCTGTCAAGATGAGCAAGTCCAAGAGAAATTCAAGAACAATATTTTTTTTGTCACTGTTTCCAAAACGCCAAACTTCCACCAAATTGTACAAGAGCTATACCGAAGCAAGGGTAACAAGGCACCTACTTTTAAAGATGACGAAAATGCACTCACGTGGCTGCAAAAATTTATGAGGGAAGAAGGACAAAACCCTTTACTGTTGGTCTTGGATGATGTTTGGTCTGGATCAGACTCTTTACTTGCAAAGTTTGAATTCGAAATGCAAGATTACAAAGTTTTAGTGACATCAAGATCTGAATTTCCAAGATATGGCTCTTATGCTTTACAGTCATTGGATTTTGACAATGCAATGGAACTCTTTCGTCATGCAGCATCCTTGGGAGAAAGAAGTTTGCATATTCGACCAGATATTTCAAGACAGGTGATTTCTAGTAGTAGAGAGGGCTGTAAGGGATTTCCACTTGCTATAACAGTGGCCGGAAAATCACTTTGCGGACAGCCTATAGAGATTTGGCAGGAAAGACTCATCAAATGGTCCAAACATTCTTCGATTCTTGATTCGGAGACTGAATTGCTTCTTCGCCTCCAAACCAGTTTAGATGTCTCGAATAAGGAAATGAGTATGGTCAAAGAATGTTTCTTAGACCTAGGTTCATTTCCTGAAGATCAAAGAATCCCTGTTGCTGCCCTCATTGATATCTGGACTGAGTCTTACGATTCACTGGATCAAGACATTTTGTGTGTTGCAAACCTCCACCAGATCACCAACCGAAGTCTAGCTAATCTTGTAGTCACAAGGAAGGACAAGCTGCAGGGGGATGGATACTACAGTGAACATTTTGTTACCCAGCATGATCTGCTTAGAGAGCTGGCTATCTATGAGACAAGACAAGAGGACCCCGGACATAGAGAAAGACTTATTATCAACATATCTAAAGACAATTTTCCCAAGTGGTGGAGCAAACAAAAGTATCAATGCATGAAGGCTCGCCTGTTATCTATCTCAACTGATGGAGAGTTTTCAACAAAATGGCACAACATGGAACTACCAGTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

592

Amino Acids

67.28

Weight (kDa)

6.0

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 6 - 138 1e-25 Arabidopsis broad-spectrum mildew resistance protein RPW8
NB-ARC PF00931 207 - 339 2.3e-17 NB-ARC domain
AAA_22 PF13401 221 - 312 9.6e-06 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 580
AccB1I GGYRCC 2 cut(s) 580, 838
AccB7I CCANNNNNTGG 2 cut(s) 1028, 1674
AccBSI CCGCTC 1 cut(s) 680
AciI CCGC 4 cut(s) 258, 578, 678, 1212
AclWI GGATC 4 cut(s) 189, 195, 952, 1452
AcoI YGGCCR 2 cut(s) 3, 1194
AcsI RAATTY 4 cut(s) 746, 884, 971, 1016
AcuI CTGAAG 2 cut(s) 653, 1401
AcvI CACGTG 1 cut(s) 873
AfaI GTAC 4 cut(s) 284, 293, 582, 807
AfiI CCNNNNNNNGG 4 cut(s) 229, 826, 1028, 1674
AhdI GACNNNNNGTC 1 cut(s) 420
AjnI CCWGG 1 cut(s) 192
AleI CACNNNNGTG 1 cut(s) 871
AluBI AGCT 7 cut(s) 79, 569, 814, 1499, 1528, 1588, 1775
AluI AGCT 7 cut(s) 79, 569, 814, 1499, 1528, 1588, 1775
Alw21I GWGCWC 2 cut(s) 60, 246
Alw26I GTCTC 5 cut(s) 377, 467, 1277, 1327, 1595
AlwI GGATC 4 cut(s) 189, 195, 952, 1452
AoxI GGCC 4 cut(s) 3, 67, 617, 1194
ApeKI GCWGC 4 cut(s) 877, 1088, 1403, 1528
ApoI RAATTY 4 cut(s) 746, 884, 971, 1016
Asp700I GAANNNNTTC 3 cut(s) 644, 1077, 1293
Asp718I GGTACC 1 cut(s) 580
AspA2I CCTAGG 1 cut(s) 1366
AspS9I GGNCC 3 cut(s) 617, 1254, 1615
AsuC2I CCSGG 3 cut(s) 28, 684, 1620
AsuHPI GGTGA 4 cut(s) 409, 514, 1153, 1474
AsuII TTCGAA 2 cut(s) 527, 975
AvaII GGWCC 2 cut(s) 1254, 1615
AvrII CCTAGG 1 cut(s) 1366
BaeI ACNNNNGTAYC 4 cut(s) 1534, 1567, 1673, 1706
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 580, 838
BarI GAAGNNNNNNTAC 4 cut(s) 281, 313, 573, 605
BbrPI CACGTG 1 cut(s) 873
BbsI GAAGAC 1 cut(s) 419
Bbv12I GWGCWC 2 cut(s) 60, 246
BbvI GCAGC 4 cut(s) 864, 1100, 1390, 1515
BccI CCATC 6 cut(s) 59, 312, 368, 608, 1532, 1724
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 1 cut(s) 194
BciVI GTATCC 1 cut(s) 1535
BcnI CCSGG 3 cut(s) 28, 684, 1620
BcoDI GTCTC 5 cut(s) 377, 467, 1277, 1327, 1595
BfaI CTAG 5 cut(s) 206, 227, 1149, 1367, 1496
BfmI CTRYAG 4 cut(s) 491, 1221, 1529, 1546
BfuI GTATCC 1 cut(s) 1535
BglII AGATCT 1 cut(s) 1010
BisI GCNGC 5 cut(s) 259, 878, 1089, 1404, 1529
BlnI CCTAGG 1 cut(s) 1366
BlsI GCNGC 5 cut(s) 260, 879, 1090, 1405, 1530
Bme1390I CCNGG 4 cut(s) 28, 194, 684, 1620
Bme18I GGWCC 2 cut(s) 1254, 1615
BmeRI GACNNNNNGTC 1 cut(s) 420
BmgT120I GGNCC 3 cut(s) 617, 1254, 1615
BmiI GGNNCC 3 cut(s) 582, 840, 1617
BmrFI CCNGG 4 cut(s) 28, 194, 684, 1620
BmsI GCATC 3 cut(s) 339, 543, 1100
BpiI GAAGAC 1 cut(s) 419
BpmI CTGGAG 2 cut(s) 164, 215
Bpu14I TTCGAA 2 cut(s) 527, 975
BpuEI CTTGAG 1 cut(s) 56
BpuMI CCSGG 3 cut(s) 28, 684, 1620
BsaAI YACGTR 1 cut(s) 873
BsaBI GATNNNNATC 1 cut(s) 186
BsaI GGTCTC 2 cut(s) 377, 467
BsaJI CCNNGG 4 cut(s) 27, 1095, 1366, 1618
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 826, 1028, 1674
Bse1I ACTGG 5 cut(s) 11, 438, 1311, 1446, 1769
Bse3DI GCAATG 1 cut(s) 1074
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 4 cut(s) 27, 1095, 1366, 1618
BseGI GGATG 7 cut(s) 22, 323, 619, 695, 934, 1091, 1543
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 4 cut(s) 229, 826, 1028, 1674
BseMI GCAATG 1 cut(s) 1074
BseMII CTCAG 1 cut(s) 1416
BseNI ACTGG 5 cut(s) 11, 438, 1311, 1446, 1769
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 4 cut(s) 864, 1100, 1390, 1515
BseYI CCCAGC 2 cut(s) 539, 1566
BshFI GGCC 4 cut(s) 5, 69, 619, 1196
BshNI GGYRCC 2 cut(s) 580, 838
BsiHKAI GWGCWC 2 cut(s) 60, 246
BsiSI CCGG 4 cut(s) 27, 684, 1197, 1620
BslI CCNNNNNNNGG 4 cut(s) 229, 826, 1028, 1674
BsmAI GTCTC 5 cut(s) 377, 467, 1277, 1327, 1595
BsnI GGCC 4 cut(s) 5, 69, 619, 1196
Bso31I GGTCTC 2 cut(s) 377, 467
Bsp119I TTCGAA 2 cut(s) 527, 975
Bsp1286I GDGCHC 2 cut(s) 60, 246
Bsp1407I TGTACA 2 cut(s) 282, 805
Bsp143I GATC 8 cut(s) 181, 187, 944, 1010, 1384, 1444, 1479, 1573
BspACI CCGC 4 cut(s) 258, 578, 678, 1212
BspANI GGCC 4 cut(s) 5, 69, 619, 1196
BspCNI CTCAG 1 cut(s) 1417
BspLI GGNNCC 3 cut(s) 582, 840, 1617
BspMAI CTGCAG 1 cut(s) 1533
BspPI GGATC 4 cut(s) 189, 195, 952, 1452
BspT104I TTCGAA 2 cut(s) 527, 975
BspT107I GGYRCC 2 cut(s) 580, 838
BspTNI GGTCTC 2 cut(s) 377, 467
BsrBI CCGCTC 1 cut(s) 680
BsrDI GCAATG 1 cut(s) 1074
BsrGI TGTACA 2 cut(s) 282, 805
BsrI ACTGG 5 cut(s) 11, 438, 1311, 1446, 1769
BssECI CCNNGG 4 cut(s) 27, 1095, 1366, 1618
BssMI GATC 8 cut(s) 181, 187, 944, 1010, 1384, 1444, 1479, 1573
BssT1I CCWWGG 2 cut(s) 1095, 1366
Bst2UI CCWGG 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 395
BstAPI GCANNNNNTGC 1 cut(s) 1576
BstAUI TGTACA 2 cut(s) 282, 805
BstBAI YACGTR 1 cut(s) 873
BstBI TTCGAA 2 cut(s) 527, 975
BstC8I GCNNGC 3 cut(s) 211, 1590, 1708
BstDEI CTNAG 4 cut(s) 1360, 1425, 1580, 1776
BstF5I GGATG 7 cut(s) 22, 323, 619, 695, 934, 1091, 1543
BstKTI GATC 8 cut(s) 184, 190, 947, 1013, 1387, 1447, 1482, 1576
BstMAI GTCTC 5 cut(s) 377, 467, 1277, 1327, 1595
BstMBI GATC 8 cut(s) 181, 187, 944, 1010, 1384, 1444, 1479, 1573
BstMWI GCNNNNNNNGC 3 cut(s) 575, 1576, 1585
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 4 cut(s) 26, 192, 682, 1618
BstSFI CTRYAG 4 cut(s) 491, 1221, 1529, 1546
BstV1I GCAGC 4 cut(s) 864, 1100, 1390, 1515
BstV2I GAAGAC 1 cut(s) 419
BstX2I RGATCY 2 cut(s) 181, 1010
BstXI CCANNNNNNTGG 1 cut(s) 13
BstYI RGATCY 2 cut(s) 181, 1010
BsuI GTATCC 1 cut(s) 1535
BsuRI GGCC 4 cut(s) 5, 69, 619, 1196
BtsCI GGATG 7 cut(s) 22, 323, 619, 695, 934, 1091, 1543
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 6 cut(s) 18, 480, 771, 1197, 1439, 1555
Cac8I GCNNGC 3 cut(s) 211, 1590, 1708
Cfr13I GGNCC 3 cut(s) 617, 1254, 1615
CseI GACGC 1 cut(s) 109
Csp6I GTAC 4 cut(s) 283, 292, 581, 806
CviAII CATG 5 cut(s) 362, 1085, 1571, 1699, 1759
CviQI GTAC 4 cut(s) 283, 292, 581, 806
DdeI CTNAG 4 cut(s) 1360, 1425, 1580, 1776
DpnI GATC 8 cut(s) 183, 189, 946, 1012, 1386, 1446, 1481, 1575
DpnII GATC 8 cut(s) 181, 187, 944, 1010, 1384, 1444, 1479, 1573
DraI TTTAAA 1 cut(s) 850
DriI GACNNNNNGTC 1 cut(s) 420
EaeI YGGCCR 2 cut(s) 3, 1194
Eam1104I CTCTTC 1 cut(s) 395
Eam1105I GACNNNNNGTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 395
Eco130I CCWWGG 2 cut(s) 1095, 1366
Eco31I GGTCTC 2 cut(s) 377, 467
Eco32I GATATC 1 cut(s) 1417
Eco47I GGWCC 2 cut(s) 1254, 1615
Eco57I CTGAAG 2 cut(s) 653, 1401
Eco72I CACGTG 1 cut(s) 873
EcoO109I RGGNCCY 1 cut(s) 1615
EcoRI GAATTC 1 cut(s) 971
EcoRII CCWGG 1 cut(s) 192
EcoRV GATATC 1 cut(s) 1417
EcoT14I CCWWGG 2 cut(s) 1095, 1366
EcoT22I ATGCAT 1 cut(s) 1700
ErhI CCWWGG 2 cut(s) 1095, 1366
FaeI CATG 5 cut(s) 365, 1088, 1574, 1702, 1762
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 5 cut(s) 361, 1084, 1570, 1698, 1758
Fnu4HI GCNGC 5 cut(s) 259, 878, 1089, 1404, 1529
FokI GGATG 7 cut(s) 29, 330, 626, 702, 941, 1078, 1550
Fsp4HI GCNGC 5 cut(s) 259, 878, 1089, 1404, 1529
FspBI CTAG 5 cut(s) 206, 227, 1149, 1367, 1496
GluI GCNGC 5 cut(s) 259, 878, 1089, 1404, 1529
GsaI CCCAGC 2 cut(s) 543, 1570
GsuI CTGGAG 2 cut(s) 164, 215
HaeIII GGCC 4 cut(s) 5, 69, 619, 1196
HapII CCGG 4 cut(s) 27, 684, 1197, 1620
HgaI GACGC 1 cut(s) 109
Hin1II CATG 5 cut(s) 365, 1088, 1574, 1702, 1762
HindIII AAGCTT 1 cut(s) 567
HinfI GANTC 9 cut(s) 137, 421, 950, 1242, 1270, 1277, 1392, 1427, 1436
HpaII CCGG 4 cut(s) 27, 684, 1197, 1620
HphI GGTGA 4 cut(s) 409, 514, 1153, 1474
Hpy166II GTNNAC 2 cut(s) 283, 1553
Hpy188I TCNGA 3 cut(s) 949, 1015, 1282
Hpy8I GTNNAC 2 cut(s) 283, 1553
HpyAV CCTTC 4 cut(s) 373, 893, 1513, 1696
HpyCH4IV ACGT 1 cut(s) 872
HpyF10VI GCNNNNNNNGC 3 cut(s) 575, 1576, 1585
HpyF3I CTNAG 4 cut(s) 1360, 1425, 1580, 1776
HpySE526I ACGT 1 cut(s) 872
Hsp92II CATG 5 cut(s) 365, 1088, 1574, 1702, 1762
KpnI GGTACC 1 cut(s) 584
Kzo9I GATC 8 cut(s) 181, 187, 944, 1010, 1384, 1444, 1479, 1573
LmnI GCTCC 6 cut(s) 76, 145, 276, 463, 685, 1677
Lsp1109I GCAGC 4 cut(s) 864, 1100, 1390, 1515
LweI GCATC 3 cut(s) 339, 543, 1100
MaeI CTAG 5 cut(s) 206, 227, 1149, 1367, 1496
MaeII ACGT 1 cut(s) 872
MaeIII GTNAC 5 cut(s) 769, 830, 1000, 1510, 1561
MalI GATC 8 cut(s) 183, 189, 946, 1012, 1386, 1446, 1481, 1575
MbiI CCGCTC 1 cut(s) 680
MboI GATC 8 cut(s) 181, 187, 944, 1010, 1384, 1444, 1479, 1573
MboII GAAGA 8 cut(s) 212, 412, 424, 646, 908, 1257, 1289, 1394
MflI RGATCY 2 cut(s) 181, 1010
MhlI GDGCHC 2 cut(s) 60, 246
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 9 cut(s) 468, 561, 746, 801, 884, 971, 1016, 1289, 1660
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 430, 944, 1236, 1436
MmeI TCCRAC 3 cut(s) 324, 586, 617
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 1700
MroXI GAANNNNTTC 3 cut(s) 644, 1077, 1293
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 174, 333, 849
MslI CAYNNNNRTG 1 cut(s) 871
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 27, 684, 1197, 1620
MspR9I CCNGG 4 cut(s) 28, 194, 684, 1620
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 3 cut(s) 575, 1576, 1585
NciI CCSGG 3 cut(s) 28, 684, 1620
NdeII GATC 8 cut(s) 181, 187, 944, 1010, 1384, 1444, 1479, 1573
NlaIII CATG 5 cut(s) 365, 1088, 1574, 1702, 1762
NlaIV GGNNCC 3 cut(s) 582, 840, 1617
NmeAIII GCCGAG 1 cut(s) 533
NmuCI GTSAC 3 cut(s) 769, 1000, 1510
NsiI ATGCAT 1 cut(s) 1700
NspV TTCGAA 2 cut(s) 527, 975
OliI CACNNNNGTG 1 cut(s) 871
PdmI GAANNNNTTC 3 cut(s) 644, 1077, 1293
PfeI GAWTC 5 cut(s) 137, 1270, 1277, 1392, 1436
PflFI GACNNNGTC 1 cut(s) 1426
PflMI CCANNNNNTGG 2 cut(s) 1028, 1674
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 5 cut(s) 260, 879, 1090, 1405, 1530
PleI GAGTC 4 cut(s) 429, 944, 1236, 1435
PmaCI CACGTG 1 cut(s) 873
PmlI CACGTG 1 cut(s) 873
PpsI GAGTC 4 cut(s) 429, 944, 1236, 1435
Ppu21I YACGTR 1 cut(s) 873
PpuMI RGGWCCY 1 cut(s) 1615
Psp5II RGGWCCY 1 cut(s) 1615
Psp6I CCWGG 1 cut(s) 192
PspCI CACGTG 1 cut(s) 873
PspFI CCCAGC 2 cut(s) 539, 1566
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 3 cut(s) 582, 840, 1617
PspPI GGNCC 3 cut(s) 617, 1254, 1615
PspPPI RGGWCCY 1 cut(s) 1615
PsrI GAACNNNNNNTAC 2 cut(s) 83, 115
PstI CTGCAG 1 cut(s) 1533
PsuI RGATCY 2 cut(s) 181, 1010
PsyI GACNNNGTC 1 cut(s) 1426
RsaI GTAC 4 cut(s) 284, 293, 582, 807
RsaNI GTAC 4 cut(s) 283, 292, 581, 806
RseI CAYNNNNRTG 1 cut(s) 871
SaqAI TTAA 3 cut(s) 174, 333, 849
SatI GCNGC 5 cut(s) 259, 878, 1089, 1404, 1529
Sau3AI GATC 8 cut(s) 181, 187, 944, 1010, 1384, 1444, 1479, 1573
Sau96I GGNCC 3 cut(s) 617, 1254, 1615
SchI GAGTC 4 cut(s) 430, 944, 1236, 1436
ScrFI CCNGG 4 cut(s) 28, 194, 684, 1620
SduI GDGCHC 2 cut(s) 60, 246
SfaNI GCATC 3 cut(s) 339, 543, 1100
SfcI CTRYAG 4 cut(s) 491, 1221, 1529, 1546
SfuI TTCGAA 2 cut(s) 527, 975
SinI GGWCC 2 cut(s) 1254, 1615
SmiMI CAYNNNNRTG 1 cut(s) 871
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 9 cut(s) 468, 561, 746, 801, 884, 971, 1016, 1289, 1660
SsiI CCGC 4 cut(s) 258, 578, 678, 1212
SspI AATATT 1 cut(s) 760
SspMI CTAG 5 cut(s) 206, 227, 1149, 1367, 1496
StyD4I CCNGG 4 cut(s) 26, 192, 682, 1618
StyI CCWWGG 2 cut(s) 1095, 1366
TaiI ACGT 1 cut(s) 875
TaqI TCGA 7 cut(s) 135, 434, 527, 975, 1120, 1268, 1325
TasI AATT 9 cut(s) 468, 561, 746, 801, 884, 971, 1016, 1289, 1660
TatI WGTACW 3 cut(s) 282, 291, 805
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 5 cut(s) 137, 1270, 1277, 1392, 1436
Tru1I TTAA 3 cut(s) 174, 333, 849
Tru9I TTAA 3 cut(s) 174, 333, 849
TscAI CASTG 6 cut(s) 18, 487, 778, 1197, 1446, 1555
TseFI GTSAC 3 cut(s) 769, 1000, 1510
TseI GCWGC 4 cut(s) 877, 1088, 1403, 1528
Tsp45I GTSAC 3 cut(s) 769, 1000, 1510
TspDTI ATGAA 4 cut(s) 350, 653, 1362, 1715
TspRI CASTG 6 cut(s) 18, 487, 778, 1197, 1446, 1555
Tth111I GACNNNGTC 1 cut(s) 1426
Van91I CCANNNNNTGG 2 cut(s) 1028, 1674
VpaK11BI GGWCC 2 cut(s) 1254, 1615
XapI RAATTY 4 cut(s) 746, 884, 971, 1016
XmaJI CCTAGG 1 cut(s) 1366
XmnI GAANNNNTTC 3 cut(s) 644, 1077, 1293
XspI CTAG 5 cut(s) 206, 227, 1149, 1367, 1496
Zsp2I ATGCAT 1 cut(s) 1700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.