disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RPW8 | PF05659 | 6 - 138 | 1.2e-18 | Arabidopsis broad-spectrum mildew resistance protein RPW8 |
| NB-ARC | PF00931 | 174 - 248 | 4e-06 | NB-ARC domain |
| LRR_14 | PF23598 | 658 - 719 | 4.8e-06 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 691 - 761 | 4.5e-07 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1729 |
| Acc16I | TGCGCA | 1 cut(s) | 2354 |
| Acc36I | ACCTGC | 1 cut(s) | 1729 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 878, 1330 |
| AccI | GTMKAC | 1 cut(s) | 1873 |
| AciI | CCGC | 2 cut(s) | 353, 1138 |
| AclWI | GGATC | 8 cut(s) | 195, 674, 841, 893, 960, 1380, 1432, 2277 |
| AcoI | YGGCCR | 1 cut(s) | 1332 |
| AcsI | RAATTY | 5 cut(s) | 274, 311, 937, 1627, 2375 |
| AcuI | CTGAAG | 5 cut(s) | 1239, 1787, 2015, 2149, 2205 |
| AdeI | CACNNNGTG | 1 cut(s) | 461 |
| AfaI | GTAC | 3 cut(s) | 967, 1001, 1991 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 878, 1223, 1330 |
| AflII | CTTAAG | 2 cut(s) | 1532, 1985 |
| AflIII | ACRYGT | 1 cut(s) | 1887 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 253 |
| AjnI | CCWGG | 4 cut(s) | 589, 768, 948, 2038 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 865, 897 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 524, 556 |
| Alw21I | GWGCWC | 4 cut(s) | 123, 408, 1248, 2237 |
| Alw26I | GTCTC | 4 cut(s) | 327, 1139, 2221, 2303 |
| Alw44I | GTGCAC | 1 cut(s) | 2233 |
| AlwI | GGATC | 8 cut(s) | 195, 674, 841, 893, 960, 1380, 1432, 2277 |
| Ama87I | CYCGRG | 1 cut(s) | 1450 |
| AoxI | GGCC | 3 cut(s) | 615, 782, 1332 |
| ApaLI | GTGCAC | 1 cut(s) | 2233 |
| ApeKI | GCWGC | 6 cut(s) | 23, 427, 709, 724, 1377, 1402 |
| ApoI | RAATTY | 5 cut(s) | 274, 311, 937, 1627, 2375 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 613, 645, 1329, 1361 |
| AspLEI | GCGC | 2 cut(s) | 1788, 2355 |
| AspS9I | GGNCC | 4 cut(s) | 616, 766, 1447, 1588 |
| AsuC2I | CCSGG | 2 cut(s) | 1451, 1452 |
| AsuHPI | GGTGA | 4 cut(s) | 182, 479, 1710, 2002 |
| AsuII | TTCGAA | 1 cut(s) | 686 |
| AvaI | CYCGRG | 1 cut(s) | 1450 |
| AvaII | GGWCC | 3 cut(s) | 766, 1447, 1588 |
| AxyI | CCTNAGG | 1 cut(s) | 2075 |
| BaeGI | GKGCMC | 1 cut(s) | 2237 |
| BalI | TGGCCA | 1 cut(s) | 1334 |
| BanII | GRGCYC | 2 cut(s) | 123, 802 |
| BbsI | GAAGAC | 2 cut(s) | 1227, 2193 |
| Bbv12I | GWGCWC | 4 cut(s) | 123, 408, 1248, 2237 |
| BbvCI | CCTCAGC | 1 cut(s) | 1611 |
| BbvI | GCAGC | 6 cut(s) | 10, 414, 696, 736, 1364, 1414 |
| BccI | CCATC | 4 cut(s) | 362, 505, 1559, 1901 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 666, 700 |
| BciT130I | CCWGG | 4 cut(s) | 591, 770, 950, 2040 |
| BclI | TGATCA | 3 cut(s) | 153, 634, 2340 |
| BcnI | CCSGG | 2 cut(s) | 1451, 1452 |
| BcoDI | GTCTC | 4 cut(s) | 327, 1139, 2221, 2303 |
| BfaI | CTAG | 5 cut(s) | 44, 474, 851, 1881, 1922 |
| BfmI | CTRYAG | 6 cut(s) | 24, 399, 480, 722, 1381, 1722 |
| BfrI | CTTAAG | 2 cut(s) | 1532, 1985 |
| BfuAI | ACCTGC | 1 cut(s) | 1729 |
| BglII | AGATCT | 2 cut(s) | 863, 1010 |
| BisI | GCNGC | 6 cut(s) | 24, 428, 710, 725, 1378, 1403 |
| BlpI | GCTNAGC | 2 cut(s) | 2057, 2201 |
| BlsI | GCNGC | 6 cut(s) | 25, 429, 711, 726, 1379, 1404 |
| BmcAI | AGTACT | 1 cut(s) | 1001 |
| Bme1390I | CCNGG | 6 cut(s) | 591, 770, 950, 1451, 1452, 2040 |
| Bme18I | GGWCC | 3 cut(s) | 766, 1447, 1588 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 253 |
| BmeT110I | CYCGRG | 1 cut(s) | 1450 |
| BmgT120I | GGNCC | 4 cut(s) | 616, 766, 1447, 1588 |
| BmiI | GGNNCC | 4 cut(s) | 799, 1449, 1589, 2328 |
| BmrFI | CCNGG | 6 cut(s) | 591, 770, 950, 1451, 1452, 2040 |
| BmsI | GCATC | 4 cut(s) | 745, 1276, 1441, 1606 |
| BoxI | GACNNNNGTC | 2 cut(s) | 851, 2193 |
| BpiI | GAAGAC | 2 cut(s) | 1227, 2193 |
| BpmI | CTGGAG | 3 cut(s) | 612, 1859, 2061 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1611 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2057, 2201 |
| Bpu14I | TTCGAA | 1 cut(s) | 686 |
| BpuEI | CTTGAG | 4 cut(s) | 266, 917, 1169, 2294 |
| BpuMI | CCSGG | 2 cut(s) | 1451, 1452 |
| BsaI | GGTCTC | 1 cut(s) | 327 |
| BsaJI | CCNNGG | 3 cut(s) | 948, 1450, 1677 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1349, 1379 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 878, 1223, 1330 |
| Bse1I | ACTGG | 1 cut(s) | 189 |
| Bse21I | CCTNAGG | 1 cut(s) | 2075 |
| Bse3DI | GCAATG | 4 cut(s) | 927, 1427, 1910, 1954 |
| BseBI | CCWGG | 4 cut(s) | 591, 770, 950, 2040 |
| BseDI | CCNNGG | 3 cut(s) | 948, 1450, 1677 |
| BseGI | GGATG | 4 cut(s) | 373, 778, 944, 1893 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 878, 1223, 1330 |
| BseMI | GCAATG | 4 cut(s) | 927, 1427, 1910, 1954 |
| BseMII | CTCAG | 5 cut(s) | 340, 838, 1602, 2048, 2192 |
| BseNI | ACTGG | 1 cut(s) | 189 |
| BseRI | GAGGAG | 2 cut(s) | 1172, 1470 |
| BseSI | GKGCMC | 1 cut(s) | 2237 |
| BseXI | GCAGC | 6 cut(s) | 10, 414, 696, 736, 1364, 1414 |
| BsgI | GTGCAG | 1 cut(s) | 54 |
| BshFI | GGCC | 3 cut(s) | 617, 784, 1334 |
| BsiHKAI | GWGCWC | 4 cut(s) | 123, 408, 1248, 2237 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1450 |
| BsiSI | CCGG | 1 cut(s) | 1451 |
| BslFI | GGGAC | 1 cut(s) | 1601 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 878, 1223, 1330 |
| BsmAI | GTCTC | 4 cut(s) | 327, 1139, 2221, 2303 |
| BsmBI | CGTCTC | 1 cut(s) | 1139 |
| BsmFI | GGGAC | 1 cut(s) | 1601 |
| BsnI | GGCC | 3 cut(s) | 617, 784, 1334 |
| Bso31I | GGTCTC | 1 cut(s) | 327 |
| BsoBI | CYCGRG | 1 cut(s) | 1450 |
| Bsp119I | TTCGAA | 1 cut(s) | 686 |
| Bsp1286I | GDGCHC | 5 cut(s) | 123, 408, 802, 1248, 2237 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2057, 2201 |
| BspACI | CCGC | 2 cut(s) | 353, 1138 |
| BspANI | GGCC | 3 cut(s) | 617, 784, 1334 |
| BspCNI | CTCAG | 5 cut(s) | 339, 837, 1603, 2049, 2193 |
| BspHI | TCATGA | 1 cut(s) | 631 |
| BspLI | GGNNCC | 4 cut(s) | 799, 1449, 1589, 2328 |
| BspMAI | CTGCAG | 3 cut(s) | 28, 726, 1726 |
| BspMI | ACCTGC | 1 cut(s) | 1729 |
| BspPI | GGATC | 8 cut(s) | 195, 674, 841, 893, 960, 1380, 1432, 2277 |
| BspQI | GCTCTTC | 1 cut(s) | 111 |
| BspT104I | TTCGAA | 1 cut(s) | 686 |
| BspTI | CTTAAG | 2 cut(s) | 1532, 1985 |
| BspTNI | GGTCTC | 1 cut(s) | 327 |
| BsrDI | GCAATG | 4 cut(s) | 927, 1427, 1910, 1954 |
| BsrI | ACTGG | 1 cut(s) | 189 |
| BssECI | CCNNGG | 3 cut(s) | 948, 1450, 1677 |
| BssT1I | CCWWGG | 1 cut(s) | 1677 |
| Bst2UI | CCWGG | 4 cut(s) | 591, 770, 950, 2040 |
| Bst4CI | ACNGT | 9 cut(s) | 262, 682, 762, 1004, 1030, 1385, 2018, 2085, 2232 |
| Bst6I | CTCTTC | 7 cut(s) | 111, 804, 933, 1763, 1991, 2301, 2310 |
| BstAFI | CTTAAG | 2 cut(s) | 1532, 1985 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 32, 1411 |
| BstBI | TTCGAA | 1 cut(s) | 686 |
| BstC8I | GCNNGC | 3 cut(s) | 21, 1425, 1968 |
| BstF5I | GGATG | 4 cut(s) | 373, 778, 944, 1893 |
| BstHHI | GCGC | 2 cut(s) | 1788, 2355 |
| BstMAI | GTCTC | 4 cut(s) | 327, 1139, 2221, 2303 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 32, 1273, 1411, 1420, 1429 |
| BstNI | CCWGG | 4 cut(s) | 591, 770, 950, 2040 |
| BstNSI | RCATGY | 2 cut(s) | 1597, 1891 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 851, 2193 |
| BstSCI | CCNGG | 6 cut(s) | 589, 768, 948, 1449, 1450, 2038 |
| BstSFI | CTRYAG | 6 cut(s) | 24, 399, 480, 722, 1381, 1722 |
| BstSLI | GKGCMC | 1 cut(s) | 2237 |
| BstV1I | GCAGC | 6 cut(s) | 10, 414, 696, 736, 1364, 1414 |
| BstV2I | GAAGAC | 2 cut(s) | 1227, 2193 |
| BstX2I | RGATCY | 6 cut(s) | 666, 863, 898, 1010, 1437, 2269 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1030 |
| BstYI | RGATCY | 6 cut(s) | 666, 863, 898, 1010, 1437, 2269 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2075 |
| BsuRI | GGCC | 3 cut(s) | 617, 784, 1334 |
| BtsCI | GGATG | 4 cut(s) | 373, 778, 944, 1893 |
| BtsI | GCAGTG | 1 cut(s) | 582 |
| BtsIMutI | CAGTG | 5 cut(s) | 149, 582, 758, 1390, 2237 |
| BveI | ACCTGC | 1 cut(s) | 1729 |
| Cac8I | GCNNGC | 3 cut(s) | 21, 1425, 1968 |
| CciI | TCATGA | 1 cut(s) | 631 |
| CfoI | GCGC | 2 cut(s) | 1788, 2355 |
| Cfr13I | GGNCC | 4 cut(s) | 616, 766, 1447, 1588 |
| Cfr9I | CCCGGG | 1 cut(s) | 1450 |
| CseI | GACGC | 1 cut(s) | 1121 |
| Csp6I | GTAC | 3 cut(s) | 966, 1000, 1990 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1905, 1940 |
| CviQI | GTAC | 3 cut(s) | 966, 1000, 1990 |
| DraI | TTTAAA | 1 cut(s) | 103 |
| DraIII | CACNNNGTG | 1 cut(s) | 461 |
| DriI | GACNNNNNGTC | 1 cut(s) | 253 |
| EaeI | YGGCCR | 1 cut(s) | 1332 |
| Eam1104I | CTCTTC | 7 cut(s) | 111, 804, 933, 1763, 1991, 2301, 2310 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 253 |
| EarI | CTCTTC | 7 cut(s) | 111, 804, 933, 1763, 1991, 2301, 2310 |
| EciI | GGCGGA | 1 cut(s) | 1127 |
| Ecl136II | GAGCTC | 1 cut(s) | 121 |
| Eco130I | CCWWGG | 1 cut(s) | 1677 |
| Eco24I | GRGCYC | 2 cut(s) | 123, 802 |
| Eco31I | GGTCTC | 1 cut(s) | 327 |
| Eco47I | GGWCC | 3 cut(s) | 766, 1447, 1588 |
| Eco53kI | GAGCTC | 1 cut(s) | 121 |
| Eco57I | CTGAAG | 5 cut(s) | 1239, 1787, 2015, 2149, 2205 |
| Eco81I | CCTNAGG | 1 cut(s) | 2075 |
| Eco88I | CYCGRG | 1 cut(s) | 1450 |
| EcoICRI | GAGCTC | 1 cut(s) | 121 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1447 |
| EcoRI | GAATTC | 2 cut(s) | 937, 2375 |
| EcoRII | CCWGG | 4 cut(s) | 589, 768, 948, 2038 |
| EcoT14I | CCWWGG | 1 cut(s) | 1677 |
| EcoT22I | ATGCAT | 1 cut(s) | 1599 |
| EcoT38I | GRGCYC | 2 cut(s) | 123, 802 |
| ErhI | CCWWGG | 1 cut(s) | 1677 |
| Esp3I | CGTCTC | 1 cut(s) | 1139 |
| FaqI | GGGAC | 1 cut(s) | 1601 |
| FauNDI | CATATG | 1 cut(s) | 1484 |
| FbaI | TGATCA | 3 cut(s) | 153, 634, 2340 |
| FblI | GTMKAC | 1 cut(s) | 1873 |
| Fnu4HI | GCNGC | 6 cut(s) | 24, 428, 710, 725, 1378, 1403 |
| FokI | GGATG | 4 cut(s) | 380, 785, 931, 1880 |
| FriOI | GRGCYC | 2 cut(s) | 123, 802 |
| Fsp4HI | GCNGC | 6 cut(s) | 24, 428, 710, 725, 1378, 1403 |
| FspBI | CTAG | 5 cut(s) | 44, 474, 851, 1881, 1922 |
| FspI | TGCGCA | 1 cut(s) | 2354 |
| GlaI | GCGC | 2 cut(s) | 1787, 2354 |
| GluI | GCNGC | 6 cut(s) | 24, 428, 710, 725, 1378, 1403 |
| GsuI | CTGGAG | 3 cut(s) | 612, 1859, 2061 |
| HaeIII | GGCC | 3 cut(s) | 617, 784, 1334 |
| HapII | CCGG | 1 cut(s) | 1451 |
| HgaI | GACGC | 1 cut(s) | 1121 |
| HhaI | GCGC | 2 cut(s) | 1788, 2355 |
| Hin6I | GCGC | 2 cut(s) | 1786, 2353 |
| HinP1I | GCGC | 2 cut(s) | 1786, 2353 |
| HincII | GTYRAC | 2 cut(s) | 414, 1874 |
| HindII | GTYRAC | 2 cut(s) | 414, 1874 |
| HindIII | AAGCTT | 4 cut(s) | 302, 545, 1529, 1807 |
| HinfI | GANTC | 8 cut(s) | 343, 788, 847, 925, 1230, 1621, 1773, 2114 |
| HpaII | CCGG | 1 cut(s) | 1451 |
| HphI | GGTGA | 4 cut(s) | 182, 479, 1710, 2002 |
| Hpy166II | GTNNAC | 5 cut(s) | 258, 414, 884, 1874, 2235 |
| Hpy8I | GTNNAC | 5 cut(s) | 258, 414, 884, 1874, 2235 |
| HpyAV | CCTTC | 9 cut(s) | 59, 119, 223, 812, 824, 1113, 1516, 1681, 1887 |
| HpyCH4III | ACNGT | 9 cut(s) | 262, 682, 762, 1004, 1030, 1385, 2018, 2085, 2232 |
| HpyCH4IV | ACGT | 2 cut(s) | 131, 2386 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 32, 1273, 1411, 1420, 1429 |
| HpySE526I | ACGT | 2 cut(s) | 131, 2386 |
| HspAI | GCGC | 2 cut(s) | 1786, 2353 |
| Ksp22I | TGATCA | 3 cut(s) | 153, 634, 2340 |
| LguI | GCTCTTC | 1 cut(s) | 111 |
| LmnI | GCTCC | 4 cut(s) | 167, 424, 592, 797 |
| Lsp1109I | GCAGC | 6 cut(s) | 10, 414, 696, 736, 1364, 1414 |
| LweI | GCATC | 4 cut(s) | 745, 1276, 1441, 1606 |
| MaeI | CTAG | 5 cut(s) | 44, 474, 851, 1881, 1922 |
| MaeII | ACGT | 2 cut(s) | 131, 2386 |
| MaeIII | GTNAC | 5 cut(s) | 127, 173, 580, 853, 1396 |
| MfeI | CAATTG | 1 cut(s) | 507 |
| MflI | RGATCY | 6 cut(s) | 666, 863, 898, 1010, 1437, 2269 |
| MhlI | GDGCHC | 5 cut(s) | 123, 408, 802, 1248, 2237 |
| MlsI | TGGCCA | 1 cut(s) | 1334 |
| MluNI | TGGCCA | 1 cut(s) | 1334 |
| MlyI | GAGTC | 5 cut(s) | 782, 841, 919, 1782, 2108 |
| MmeI | TCCRAC | 2 cut(s) | 251, 1015 |
| Mox20I | TGGCCA | 1 cut(s) | 1334 |
| Mph1103I | ATGCAT | 1 cut(s) | 1599 |
| MscI | TGGCCA | 1 cut(s) | 1334 |
| MslI | CAYNNNNRTG | 6 cut(s) | 195, 1028, 1253, 1284, 1582, 2360 |
| Msp20I | TGGCCA | 1 cut(s) | 1334 |
| MspA1I | CMGCKG | 1 cut(s) | 2200 |
| MspCI | CTTAAG | 2 cut(s) | 1532, 1985 |
| MspI | CCGG | 1 cut(s) | 1451 |
| MspR9I | CCNGG | 6 cut(s) | 591, 770, 950, 1451, 1452, 2040 |
| MssI | GTTTAAAC | 1 cut(s) | 103 |
| MunI | CAATTG | 1 cut(s) | 507 |
| MvaI | CCWGG | 4 cut(s) | 591, 770, 950, 2040 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 32, 1273, 1411, 1420, 1429 |
| NciI | CCSGG | 2 cut(s) | 1451, 1452 |
| NdeI | CATATG | 1 cut(s) | 1484 |
| NlaIV | GGNNCC | 4 cut(s) | 799, 1449, 1589, 2328 |
| NmuCI | GTSAC | 3 cut(s) | 127, 580, 853 |
| NsbI | TGCGCA | 1 cut(s) | 2354 |
| NsiI | ATGCAT | 1 cut(s) | 1599 |
| NspI | RCATGY | 2 cut(s) | 1597, 1891 |
| NspV | TTCGAA | 1 cut(s) | 686 |
| PagI | TCATGA | 1 cut(s) | 631 |
| PaqCI | CACCTGC | 1 cut(s) | 1729 |
| PciI | ACATGT | 1 cut(s) | 1887 |
| PciSI | GCTCTTC | 1 cut(s) | 111 |
| PfeI | GAWTC | 3 cut(s) | 343, 1230, 1621 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 878, 1330 |
| PfoI | TCCNGGA | 2 cut(s) | 589, 768 |
| PkrI | GCNGC | 6 cut(s) | 25, 429, 711, 726, 1379, 1404 |
| PleI | GAGTC | 5 cut(s) | 782, 841, 919, 1781, 2108 |
| PmeI | GTTTAAAC | 1 cut(s) | 103 |
| PpsI | GAGTC | 5 cut(s) | 782, 841, 919, 1781, 2108 |
| PpuMI | RGGWCCY | 1 cut(s) | 1447 |
| PscI | ACATGT | 1 cut(s) | 1887 |
| PshAI | GACNNNNGTC | 2 cut(s) | 851, 2193 |
| Psp124BI | GAGCTC | 1 cut(s) | 123 |
| Psp5II | RGGWCCY | 1 cut(s) | 1447 |
| Psp6I | CCWGG | 4 cut(s) | 589, 768, 948, 2038 |
| PspGI | CCWGG | 4 cut(s) | 589, 768, 948, 2038 |
| PspN4I | GGNNCC | 4 cut(s) | 799, 1449, 1589, 2328 |
| PspPI | GGNCC | 4 cut(s) | 616, 766, 1447, 1588 |
| PspPPI | RGGWCCY | 1 cut(s) | 1447 |
| PstI | CTGCAG | 3 cut(s) | 28, 726, 1726 |
| PsuI | RGATCY | 6 cut(s) | 666, 863, 898, 1010, 1437, 2269 |
| PvuII | CAGCTG | 1 cut(s) | 2200 |
| RsaI | GTAC | 3 cut(s) | 967, 1001, 1991 |
| RsaNI | GTAC | 3 cut(s) | 966, 1000, 1990 |
| RseI | CAYNNNNRTG | 6 cut(s) | 195, 1028, 1253, 1284, 1582, 2360 |
| SacI | GAGCTC | 1 cut(s) | 123 |
| SalI | GTCGAC | 1 cut(s) | 1872 |
| SapI | GCTCTTC | 1 cut(s) | 111 |
| SatI | GCNGC | 6 cut(s) | 24, 428, 710, 725, 1378, 1403 |
| Sau96I | GGNCC | 4 cut(s) | 616, 766, 1447, 1588 |
| ScaI | AGTACT | 1 cut(s) | 1001 |
| SchI | GAGTC | 5 cut(s) | 782, 841, 919, 1782, 2108 |
| ScrFI | CCNGG | 6 cut(s) | 591, 770, 950, 1451, 1452, 2040 |
| SduI | GDGCHC | 5 cut(s) | 123, 408, 802, 1248, 2237 |
| SfaNI | GCATC | 4 cut(s) | 745, 1276, 1441, 1606 |
| SfcI | CTRYAG | 6 cut(s) | 24, 399, 480, 722, 1381, 1722 |
| SfuI | TTCGAA | 1 cut(s) | 686 |
| SinI | GGWCC | 3 cut(s) | 766, 1447, 1588 |
| SmaI | CCCGGG | 1 cut(s) | 1452 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 195, 1028, 1253, 1284, 1582, 2360 |
| SmlI | CTYRAG | 6 cut(s) | 281, 932, 1184, 1532, 1985, 2273 |
| SmoI | CTYRAG | 6 cut(s) | 281, 932, 1184, 1532, 1985, 2273 |
| SsiI | CCGC | 2 cut(s) | 353, 1138 |
| SspMI | CTAG | 5 cut(s) | 44, 474, 851, 1881, 1922 |
| SstI | GAGCTC | 1 cut(s) | 123 |
| StyD4I | CCNGG | 6 cut(s) | 589, 768, 948, 1449, 1450, 2038 |
| StyI | CCWWGG | 1 cut(s) | 1677 |
| TaaI | ACNGT | 9 cut(s) | 262, 682, 762, 1004, 1030, 1385, 2018, 2085, 2232 |
| TaiI | ACGT | 2 cut(s) | 134, 2389 |
| TaqI | TCGA | 8 cut(s) | 114, 562, 686, 860, 1094, 1873, 2117, 2148 |
| TaqII | GACCGA | 1 cut(s) | 568 |
| TatI | WGTACW | 1 cut(s) | 999 |
| TfiI | GAWTC | 3 cut(s) | 343, 1230, 1621 |
| TscAI | CASTG | 5 cut(s) | 156, 589, 765, 1390, 2237 |
| TseFI | GTSAC | 3 cut(s) | 127, 580, 853 |
| TseI | GCWGC | 6 cut(s) | 23, 427, 709, 724, 1377, 1402 |
| Tsp45I | GTSAC | 3 cut(s) | 127, 580, 853 |
| TspDTI | ATGAA | 9 cut(s) | 78, 213, 990, 1186, 1200, 1296, 1846, 2319, 2384 |
| TspGWI | ACGGA | 2 cut(s) | 1239, 1430 |
| TspMI | CCCGGG | 1 cut(s) | 1450 |
| TspRI | CASTG | 5 cut(s) | 156, 589, 765, 1390, 2237 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 878, 1330 |
| Vha464I | CTTAAG | 2 cut(s) | 1532, 1985 |
| VneI | GTGCAC | 1 cut(s) | 2233 |
| VpaK11BI | GGWCC | 3 cut(s) | 766, 1447, 1588 |
| XapI | RAATTY | 5 cut(s) | 274, 311, 937, 1627, 2375 |
| XceI | RCATGY | 2 cut(s) | 1597, 1891 |
| XmaI | CCCGGG | 1 cut(s) | 1450 |
| XmiI | GTMKAC | 1 cut(s) | 1873 |
| XspI | CTAG | 5 cut(s) | 44, 474, 851, 1881, 1922 |
| ZrmI | AGTACT | 1 cut(s) | 1001 |
| Zsp2I | ATGCAT | 1 cut(s) | 1599 |